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Conserved domains on  [gi|1085344499|gb|OGV17204|]
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MAG: hypothetical protein A2237_19155 [Stygiobacter sp. RIFOXYA2_FULL_38_8]

Protein Classification

BatD family protein( domain architecture ID 10612567)

BatD family protein similar to Bacteroides aerotolerance regulator BatD, which is involved in tolerance to oxygen

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 30-128 3.14e-26

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


:

Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 102.70  E-value: 3.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344499  30 ASIERTTVGQNDRFQVDFTFEGGDvnsvsNFRQPNFAGFRVLSGpNQSSSMQIINGRASGSISLSYILQPSNVGEFTMGS 109
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVDGKG-----NDKLLPPPGFEVLSG-SQSSSISIINGSGSSSTTYTYTLIPRKEGTFTIPP 74

                          90
                  ....*....|....*....
gi 1085344499 110 ASIDYAGKTYSTQPIKIKV 128
Cdd:pfam13584  75 ATISVGGKTYKSNPITIKV 93
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 310-413 2.46e-15

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


:

Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 71.50  E-value: 2.46e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344499 310 AEVDKQNVTTNESITLRMNLSGSGNIKLLnapqpqLPGGFEKYEPKTVENINR-GGVVSGQKIIDYLIVPRSSGTKEIPA 388
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVDGKGNDKLL------PPPGFEVLSGSQSSSISIiNGSGSSSTTYTYTLIPRKEGTFTIPP 74

                          90       100
                  ....*....|....*....|....*
gi 1085344499 389 VEFTYfnpsskKYVTLKSQTFKINV 413
Cdd:pfam13584  75 ATISV------GGKTYKSNPITIKV 93
 
Name Accession Description Interval E-value
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 30-128 3.14e-26

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 102.70  E-value: 3.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344499  30 ASIERTTVGQNDRFQVDFTFEGGDvnsvsNFRQPNFAGFRVLSGpNQSSSMQIINGRASGSISLSYILQPSNVGEFTMGS 109
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVDGKG-----NDKLLPPPGFEVLSG-SQSSSISIINGSGSSSTTYTYTLIPRKEGTFTIPP 74

                          90
                  ....*....|....*....
gi 1085344499 110 ASIDYAGKTYSTQPIKIKV 128
Cdd:pfam13584  75 ATISVGGKTYKSNPITIKV 93
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 310-413 2.46e-15

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 71.50  E-value: 2.46e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344499 310 AEVDKQNVTTNESITLRMNLSGSGNIKLLnapqpqLPGGFEKYEPKTVENINR-GGVVSGQKIIDYLIVPRSSGTKEIPA 388
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVDGKGNDKLL------PPPGFEVLSGSQSSSISIiNGSGSSSTTYTYTLIPRKEGTFTIPP 74

                          90       100
                  ....*....|....*....|....*
gi 1085344499 389 VEFTYfnpsskKYVTLKSQTFKINV 413
Cdd:pfam13584  75 ATISV------GGKTYKSNPITIKV 93
 
Name Accession Description Interval E-value
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 30-128 3.14e-26

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 102.70  E-value: 3.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344499  30 ASIERTTVGQNDRFQVDFTFEGGDvnsvsNFRQPNFAGFRVLSGpNQSSSMQIINGRASGSISLSYILQPSNVGEFTMGS 109
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVDGKG-----NDKLLPPPGFEVLSG-SQSSSISIINGSGSSSTTYTYTLIPRKEGTFTIPP 74

                          90
                  ....*....|....*....
gi 1085344499 110 ASIDYAGKTYSTQPIKIKV 128
Cdd:pfam13584  75 ATISVGGKTYKSNPITIKV 93
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 310-413 2.46e-15

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 71.50  E-value: 2.46e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1085344499 310 AEVDKQNVTTNESITLRMNLSGSGNIKLLnapqpqLPGGFEKYEPKTVENINR-GGVVSGQKIIDYLIVPRSSGTKEIPA 388
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVDGKGNDKLL------PPPGFEVLSGSQSSSISIiNGSGSSSTTYTYTLIPRKEGTFTIPP 74

                          90       100
                  ....*....|....*....|....*
gi 1085344499 389 VEFTYfnpsskKYVTLKSQTFKINV 413
Cdd:pfam13584  75 ATISV------GGKTYKSNPITIKV 93
DUF4954 pfam16314
Domain of unknown function (DUF4954); This family consists of uncharacterized proteins around ...
 72-108 4.54e-03

Domain of unknown function (DUF4954); This family consists of uncharacterized proteins around 660 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.


Pssm-ID: 435270 [Multi-domain]  Cd Length: 653  Bit Score: 39.97  E-value: 4.54e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1085344499  72 SGPNQSSSM-------QIINGRASGSISLSYILQPSNVGEFT--MG 108
Cdd:pfam16314 305 SGSNQSNHMyklgpihQGIVERGSKTTSDSYILWPARIGAFSlvMG 350
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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