transcriptional regulator [Clostridiales bacterium 45_37]
helix-turn-helix domain-containing protein( domain architecture ID 10611674)
helix-turn-helix (HTH) domain-containing protein with an XRE (Xenobiotic Response Element) family HTH domain, binds DNA and may function as a transcriptional regulator
List of domain hits
Name | Accession | Description | Interval | E-value | ||
HTH_31 | pfam13560 | Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. |
3-65 | 8.94e-08 | ||
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. : Pssm-ID: 433309 [Multi-domain] Cd Length: 64 Bit Score: 45.60 E-value: 8.94e-08
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Name | Accession | Description | Interval | E-value | ||
HTH_31 | pfam13560 | Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. |
3-65 | 8.94e-08 | ||
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. Pssm-ID: 433309 [Multi-domain] Cd Length: 64 Bit Score: 45.60 E-value: 8.94e-08
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HipB | COG1396 | Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
1-58 | 2.50e-07 | ||
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 44.99 E-value: 2.50e-07
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HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
4-61 | 4.33e-05 | ||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 38.30 E-value: 4.33e-05
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HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
6-58 | 6.51e-05 | ||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 37.88 E-value: 6.51e-05
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Name | Accession | Description | Interval | E-value | ||
HTH_31 | pfam13560 | Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. |
3-65 | 8.94e-08 | ||
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. Pssm-ID: 433309 [Multi-domain] Cd Length: 64 Bit Score: 45.60 E-value: 8.94e-08
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HipB | COG1396 | Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
1-58 | 2.50e-07 | ||
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 44.99 E-value: 2.50e-07
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RodZ | COG1426 | Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ... |
1-61 | 8.52e-06 | ||
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 441035 [Multi-domain] Cd Length: 71 Bit Score: 40.56 E-value: 8.52e-06
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HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
4-61 | 4.33e-05 | ||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 38.30 E-value: 4.33e-05
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HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
6-58 | 6.51e-05 | ||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 37.88 E-value: 6.51e-05
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HTH_19 | pfam12844 | Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ... |
4-68 | 6.93e-05 | ||
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains. Pssm-ID: 463728 [Multi-domain] Cd Length: 64 Bit Score: 38.04 E-value: 6.93e-05
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aMBF1 | COG1813 | Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ... |
2-58 | 9.49e-05 | ||
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis]; Pssm-ID: 441418 [Multi-domain] Cd Length: 70 Bit Score: 38.00 E-value: 9.49e-05
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XRE | COG1476 | DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; |
1-61 | 8.43e-04 | ||
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; Pssm-ID: 441085 [Multi-domain] Cd Length: 68 Bit Score: 35.21 E-value: 8.43e-04
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HTH_3 | pfam01381 | Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
7-61 | 9.62e-04 | ||
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family. Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 34.82 E-value: 9.62e-04
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Blast search parameters | ||||
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