|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1-653 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 1095.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 1 MADVPADLAAVWPRVLEQLLGEGRGQGVEVKDEHWIKRCQPLALVADTALLAVPNEFAKGVLEGRLAPIVSETLSRECGR 80
Cdd:PRK14086 1 MADVQADLAAVWPRVLEQLLGEGDGQSVPAKDEAWLKRCQPLALVADTALLAVPNEFAKEVLEGRLAPIISETLSRELGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 81 PIRIAITVDDSAGEPPASASPAPpRYEEPELPSGpgqgrdpyesrGREGYEGYGRHRADDHRQGhndrhqggpgdqlpPS 160
Cdd:PRK14086 81 PIRIAITVDPSAGEPAPPPPHAR-RTSEPELPRP-----------GRRPYEGYGGPRADDRPPG--------------LP 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 161 RGDQLPTARPAYPDY-QRPEPGAWPRPSqDDYGWQQQRLGFPERDPYASPSQDYRPQSMDRPSYDQDRPSYDHDRPSYDH 239
Cdd:PRK14086 135 RQDQLPTARPAYPAYqQRPEPGAWPRAA-DDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDH 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 240 DRPSYEQQRADydqqrsdydkrpdRRNIPDSSPGSGHVHRGGPVGSALP------ASSGAPGPLAAQPAPATGPGEPTAR 313
Cdd:PRK14086 214 PRPDWDRPRRD-------------RTDRPEPPPGAGHVHRGGPGPPERDdapvvpIRPSAPGPLAAQPAPAPGPGEPTAR 280
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 314 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFI 393
Cdd:PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 394 NSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 473
Cdd:PRK14086 361 NSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 440
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 474 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPggE 553
Cdd:PRK14086 441 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIP--E 518
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 554 DSAPEITAPAIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFgGRDHTTVMHADRKIRALM 633
Cdd:PRK14086 519 DSAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALM 597
|
650 660
....*....|....*....|
gi 1151933604 634 AERRSIYNQVTELTNRIKNG 653
Cdd:PRK14086 598 AERRSIYNQVTELTNRIKNG 617
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
283-650 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 564.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 283 VGSALPASSGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTH 362
Cdd:TIGR00362 73 VGEDEEELEPNSKKPEPAPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 363 LLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNA 442
Cdd:TIGR00362 153 LLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 443 NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGAL 522
Cdd:TIGR00362 233 NKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGAL 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 523 IRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDsapEITAPAIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCREL 602
Cdd:TIGR00362 313 NRLLAYASLTGKPITLELAKEALKDLLRAQKK---EITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKEL 389
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1151933604 603 TDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 650
Cdd:TIGR00362 390 TDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
314-619 |
1.53e-176 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 503.57 E-value: 1.53e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 314 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFI 393
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 394 NSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 473
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 474 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGE 553
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1151933604 554 dsaPEITAPAIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGGRDH 619
Cdd:COG0593 241 ---KEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
314-532 |
3.99e-132 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 387.07 E-value: 3.99e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 314 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFI 393
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 394 NSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 473
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1151933604 474 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLN 532
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
563-650 |
1.56e-39 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 139.96 E-value: 1.56e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 563 AIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQ 642
Cdd:cd06571 3 LIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKED 82
|
....*...
gi 1151933604 643 VTELTNRI 650
Cdd:cd06571 83 VEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
564-628 |
6.86e-30 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 112.22 E-value: 6.86e-30
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1151933604 564 IMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRK 628
Cdd:smart00760 5 IIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
352-419 |
8.33e-06 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 47.47 E-value: 8.33e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1151933604 352 IYGESGLGKTHLLHAIGHYArsLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDI 419
Cdd:NF038214 95 LLGPPGTGKTHLAIALGYAA--CRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1-653 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 1095.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 1 MADVPADLAAVWPRVLEQLLGEGRGQGVEVKDEHWIKRCQPLALVADTALLAVPNEFAKGVLEGRLAPIVSETLSRECGR 80
Cdd:PRK14086 1 MADVQADLAAVWPRVLEQLLGEGDGQSVPAKDEAWLKRCQPLALVADTALLAVPNEFAKEVLEGRLAPIISETLSRELGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 81 PIRIAITVDDSAGEPPASASPAPpRYEEPELPSGpgqgrdpyesrGREGYEGYGRHRADDHRQGhndrhqggpgdqlpPS 160
Cdd:PRK14086 81 PIRIAITVDPSAGEPAPPPPHAR-RTSEPELPRP-----------GRRPYEGYGGPRADDRPPG--------------LP 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 161 RGDQLPTARPAYPDY-QRPEPGAWPRPSqDDYGWQQQRLGFPERDPYASPSQDYRPQSMDRPSYDQDRPSYDHDRPSYDH 239
Cdd:PRK14086 135 RQDQLPTARPAYPAYqQRPEPGAWPRAA-DDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDH 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 240 DRPSYEQQRADydqqrsdydkrpdRRNIPDSSPGSGHVHRGGPVGSALP------ASSGAPGPLAAQPAPATGPGEPTAR 313
Cdd:PRK14086 214 PRPDWDRPRRD-------------RTDRPEPPPGAGHVHRGGPGPPERDdapvvpIRPSAPGPLAAQPAPAPGPGEPTAR 280
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 314 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFI 393
Cdd:PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 394 NSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 473
Cdd:PRK14086 361 NSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 440
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 474 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPggE 553
Cdd:PRK14086 441 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIP--E 518
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 554 DSAPEITAPAIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFgGRDHTTVMHADRKIRALM 633
Cdd:PRK14086 519 DSAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALM 597
|
650 660
....*....|....*....|
gi 1151933604 634 AERRSIYNQVTELTNRIKNG 653
Cdd:PRK14086 598 AERRSIYNQVTELTNRIKNG 617
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
311-652 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 592.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 311 TARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTN 390
Cdd:PRK00149 63 ALQLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 391 EFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW 470
Cdd:PRK00149 143 DFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEW 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 471 GLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIP 550
Cdd:PRK00149 223 GLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLA 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 551 ggeDSAPEITAPAIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIR 630
Cdd:PRK00149 303 ---AQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIE 379
|
330 340
....*....|....*....|..
gi 1151933604 631 ALMAERRSIYNQVTELTNRIKN 652
Cdd:PRK00149 380 KLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
283-650 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 564.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 283 VGSALPASSGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTH 362
Cdd:TIGR00362 73 VGEDEEELEPNSKKPEPAPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 363 LLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNA 442
Cdd:TIGR00362 153 LLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 443 NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGAL 522
Cdd:TIGR00362 233 NKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGAL 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 523 IRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDsapEITAPAIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCREL 602
Cdd:TIGR00362 313 NRLLAYASLTGKPITLELAKEALKDLLRAQKK---EITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKEL 389
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1151933604 603 TDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 650
Cdd:TIGR00362 390 TDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
314-619 |
1.53e-176 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 503.57 E-value: 1.53e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 314 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFI 393
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 394 NSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 473
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 474 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGE 553
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1151933604 554 dsaPEITAPAIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGGRDH 619
Cdd:COG0593 241 ---KEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
314-532 |
3.99e-132 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 387.07 E-value: 3.99e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 314 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFI 393
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 394 NSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 473
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1151933604 474 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLN 532
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
314-650 |
3.03e-75 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 248.21 E-value: 3.03e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 314 LNPKYLFDTFVIGASN----RFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSlyPGTRVRYVSSEEFT 389
Cdd:PRK12422 104 LDPLMTFANFLVTPENdlphRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVRSELFT 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 390 NEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFE 469
Cdd:PRK12422 182 EHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFE 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 470 WGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGAL----IRVtAFASLNRQPVDLGLTEIVL 545
Cdd:PRK12422 262 WGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALtllaKRV-AYKKLSHQLLYVDDIKALL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 546 KDLIPGGEDSApeITAPAIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFgGRDHTTVMHA 625
Cdd:PRK12422 341 HDVLEAAESVR--LTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVISS 417
|
330 340
....*....|....*....|....*.
gi 1151933604 626 DRKIRALMAER-RSIYNQVTELTNRI 650
Cdd:PRK12422 418 IRAISQKLEEDdRDISMAIQEITKRL 443
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
563-650 |
1.56e-39 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 139.96 E-value: 1.56e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 563 AIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQ 642
Cdd:cd06571 3 LIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKED 82
|
....*...
gi 1151933604 643 VTELTNRI 650
Cdd:cd06571 83 VEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
564-629 |
1.43e-35 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 128.29 E-value: 1.43e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1151933604 564 IMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKI 629
Cdd:pfam08299 4 IIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
564-628 |
6.86e-30 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 112.22 E-value: 6.86e-30
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1151933604 564 IMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRK 628
Cdd:smart00760 5 IIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
350-522 |
1.26e-26 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 108.43 E-value: 1.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 350 LFIYGESGLGKTHLLHAIGHYARSLypGTRVRYVSSEEFTNEFINSIRDGkgdsfrkryREMDILLVDDIQFLADKESTQ 429
Cdd:TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQADPEVLEGL---------EQADLVCLDDVEAIAGQPEWQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 430 EEFFHTFNTLHNANKQIVLSSDRPPKQL-VTLEDrLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIA 508
Cdd:TIGR03420 110 EALFHLYNRVREAGGRLLIAGRAAPAQLpLRLPD-LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLL 188
|
170
....*....|....
gi 1151933604 509 SRISRNIRELEGAL 522
Cdd:TIGR03420 189 RHGSRDMGSLMALL 202
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
347-472 |
5.39e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 84.12 E-value: 5.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 347 YNPLFIYGESGLGKTHLLHAIGHYarSLYPGTRVRYVSSEEFTNEFINSIRDG----KGDSFRKRYREMDILLVDDIQFL 422
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGhflvRLLFELAEKAKPGVLFIDEIDSL 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1151933604 423 -ADKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLV--TLEDRLRNRFEWGL 472
Cdd:cd00009 97 sRGAQNALLRVLETLNDLRidRENVRVIGATNRPLLGDLdrALYDRLDIRIVIPL 151
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
350-540 |
1.92e-17 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 81.95 E-value: 1.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 350 LFIYGESGLGKTHLLHAIGHYArsLYPGTRVRYVSSEEFTNEFINSirdgkgdsfrkryREMDILLVDDIQFLADKEstQ 429
Cdd:PRK08903 45 FYLWGEAGSGRSHLLQALVADA--SYGGRNARYLDAASPLLAFDFD-------------PEAELYAVDDVERLDDAQ--Q 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 430 EEFFHTFNTLH-NANKQIVLSSDRPPKQLVTLEDrLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIA 508
Cdd:PRK08903 108 IALFNLFNRVRaHGQGALLVAGPAAPLALPLRED-LRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLL 186
|
170 180 190
....*....|....*....|....*....|...
gi 1151933604 509 SRISRNIRELEgALIRVTAFASLNRQ-PVDLGL 540
Cdd:PRK08903 187 THFRRDMPSLM-ALLDALDRYSLEQKrPVTLPL 218
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
350-518 |
6.95e-14 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 71.63 E-value: 6.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 350 LFIYGESGLGKTHLLHAIGHYARSLypGTRVRYVSSEEFTNeFINSIRDGkgdsfrkrYREMDILLVDDIQFLADKESTQ 429
Cdd:PRK08084 48 IYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW-FVPEVLEG--------MEQLSLVCIDNIECIAGDELWE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 430 EEFFHTFN-TLHNANKQIVLSSDRPPKQL-VTLEDrLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFI 507
Cdd:PRK08084 117 MAIFDLYNrILESGRTRLLITGDRPPRQLnLGLPD-LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFL 195
|
170
....*....|.
gi 1151933604 508 ASRISRNIREL 518
Cdd:PRK08084 196 LKRLDREMRTL 206
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
350-457 |
5.89e-12 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 65.96 E-value: 5.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 350 LFIYGESGLGKTHLLHAIGHYARSLypGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQ 429
Cdd:COG1484 102 LILLGPPGTGKTHLAIALGHEACRA--GYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGA 179
|
90 100
....*....|....*....|....*...
gi 1151933604 430 EEFFHTFNTLHNaNKQIVLSSDRPPKQL 457
Cdd:COG1484 180 ELLFELISDRYE-RRSTIITSNLPFSEW 206
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
348-474 |
5.33e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 61.24 E-value: 5.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 348 NPLFIYGESGLGKTHLLHAIGHYARslYPGTRVRYVSSEEFTNEFINSIR----------DGKGDSFRK-----RYREMD 412
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLLliivggkkasGSGELRLRLalalaRKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1151933604 413 ILLVDDIQFLADKESTQEEFFH-----TFNTLHNANKQIVLSS-DRPPKQLVTLEDRLRNRFEWGLIT 474
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLeelrlLLLLKSEKNLTVILTTnDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
350-460 |
8.41e-08 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 54.52 E-value: 8.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 350 LFIYGESGLGKTHLLHAIghyARSLYP-GTRVRYVSSEeftnEFINSIRDGKGDSF---RKRY---REMDILLVDDIQFL 422
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCI---AKELLDrGKSVIYRTAD----ELIEILREIRFNNDkelEEVYdllINCDLLIIDDLGTE 258
|
90 100 110
....*....|....*....|....*....|....*...
gi 1151933604 423 ADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTL 460
Cdd:PRK06835 259 KITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKT 296
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
563-629 |
3.03e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 49.78 E-value: 3.03e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1151933604 563 AIMAATADYFGLTVEDLCGTSRGR-ALVTARQIAMYLCRELTDLSLPKIGAQFgGRDHTTVMHADRKI 629
Cdd:PRK06030 27 AVIDLLALAFGVSGAEIASPLRGRrEVSRIRQIAMYVAHVSLGWPMNEVALAF-GRDRTTVGHACHTV 93
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
7-75 |
7.44e-06 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 48.59 E-value: 7.44e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1151933604 7 DLAAVWPRVLEQLlgegRGQGVEVKDEHWIKRCQPLALVADTALLAVPNEFAKGVLEGRLAPIVSETLS 75
Cdd:PRK00149 1 NLQSLWEKVLERL----KDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ 65
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
352-419 |
8.33e-06 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 47.47 E-value: 8.33e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1151933604 352 IYGESGLGKTHLLHAIGHYArsLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDI 419
Cdd:NF038214 95 LLGPPGTGKTHLAIALGYAA--CRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
348-453 |
1.40e-05 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 47.05 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 348 NPLFIyGESGLGKTHLLHAIGHYArsLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKES 427
Cdd:pfam01695 94 NVVLL-GPPGVGKTHLAIALGVEA--CRAGYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDEWGYLPLDQA 170
|
90 100
....*....|....*....|....*.
gi 1151933604 428 TQEEFFHTFNTLHNaNKQIVLSSDRP 453
Cdd:pfam01695 171 EANLLFQVISKRYE-HRSIILTSNLP 195
|
|
| PHA03321 |
PHA03321 |
tegument protein VP11/12; Provisional |
135-322 |
4.20e-05 |
|
tegument protein VP11/12; Provisional
Pssm-ID: 223041 [Multi-domain] Cd Length: 694 Bit Score: 46.87 E-value: 4.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 135 RHRADDHRQGHNDRHqgGPGDQLP-PSRGDQLPTARPAYPDYQRPEPGAWPR-PSQDDYGWQQQRLGFPER--------D 204
Cdd:PHA03321 462 AQRARDAGPEYVDPL--GALRRLPaGAAPPPEPAAAPSPATYYTRMGGGPPRlPPRNRATETLRPDWGPPAaappeqmeD 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 205 PYASPSQDYRPQSMDRPSYDQDRP---SYDHDRPSYDHDRPSYEQQRADYDQQRSDYDKRPDRR-----NIPDSSPGSGH 276
Cdd:PHA03321 540 PYLEPDDDRFDRRDGAAAAATSHPreaPAPDDDPIYEGVSDSEEPVYEEIPTPRVYQNPLPRPMegagePPDLDAPTSPW 619
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1151933604 277 VH--------RGGPVGSALPASSGAPGPLAAQPAPatgPGEPTARLNPKYLFDT 322
Cdd:PHA03321 620 VEeenpiygwGDSPLFSPPPAARFPPPDPALSPEP---PALPAHRPRPGALAPD 670
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
9-75 |
5.93e-04 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 38.42 E-value: 5.93e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1151933604 9 AAVWPRVLEQLLGE-GrgqgvEVKDEHWIKRCQPLALVADTAL-LAVPNEFAKGVLEGRLAPIVSETLS 75
Cdd:pfam11638 1 EELWERVLERLRKEvG-----EQTFNTWIKPLTLVDLDDGGSLtLSVPNRFVRDWVEEHYLDRILELWQ 64
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
350-419 |
8.49e-04 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 41.78 E-value: 8.49e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1151933604 350 LFIYGESGLGKTHLLHAIGHY-ARSLYPGTRVRYvssEEFTNEFINSIRDGkgdSFRK---RYREMDILLVDDI 419
Cdd:PRK08939 159 LYLYGDFGVGKSYLLAAIANElAKKGVSSTLLHF---PEFIRELKNSISDG---SVKEkidAVKEAPVLMLDDI 226
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
151-316 |
3.65e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.69 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 151 GGPGDQLPPSrgdqlptARPAYPDYQRPEPGAWPRPSQDDYGWQQQRLGFP-----------ERDPYASPSQDYRPQSMD 219
Cdd:PHA03247 2549 GDPPPPLPPA-------APPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPpqsarprapvdDRGDPRGPAPPSPLPPDT 2621
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 220 ---RPSYDQDRPSYDHDRPSYDHDRPSYEQQRADYDQQRSDYDKRPDRRNIPD--SSPGSGHVHRGGPVGSALPASSGAP 294
Cdd:PHA03247 2622 hapDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAqaSSPPQRPRRRAARPTVGSLTSLADP 2701
|
170 180
....*....|....*....|..
gi 1151933604 295 GPLAAQPAPATGPGEPTARLNP 316
Cdd:PHA03247 2702 PPPPPTPEPAPHALVSATPLPP 2723
|
|
| DUF5892 |
pfam19243 |
Family of unknown function (DUF5892); This is a family of uncharacterized proteins of unknown ... |
113-255 |
5.22e-03 |
|
Family of unknown function (DUF5892); This is a family of uncharacterized proteins of unknown function predominantly found in Iridoviridae.
Pssm-ID: 437075 Cd Length: 327 Bit Score: 39.43 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 113 SGPGQGRDPYESRGREGYEGYGRHRADDHRQGHNDRHQGGPGdqlppsrgdqlptarPAYPDYQRPepgawpRPSQDdyg 192
Cdd:pfam19243 218 SKKGKGIQPEDAKPQGVKHQHAIRRDDRHRHGMRGTRYGAPN---------------YGYRDQQQQ------RPAQG--- 273
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1151933604 193 wqQQRLGFPERDPYASPSQdyrpqsmdrpsYDQDRPSYDHDRPSYDHDRPSYEQQRADYDQQR 255
Cdd:pfam19243 274 --QQSRGQWQRHPREGEGQ-----------WTQRRPAQQQQRPAQQQQRPAQQQQRPAQQQQR 323
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
131-307 |
5.79e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 40.07 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 131 EGYGRH--RADDHRQGHNDRHQGGPGDQLPPSRGDQLPTARPAY--------------PDYQRPEPGAWPRPSQDDYGWQ 194
Cdd:PRK10263 378 EGYPQQsqYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYapapeqpaqqpyyaPAPEQPVAGNAWQAEEQQSTFA 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 195 QQRLGFPER---DPYASPSQDYRPQSMDRPSYDQDRPSYDHDRPSydhdRP------SYEQQRADYDQQRSDYDK---RP 262
Cdd:PRK10263 458 PQSTYQTEQtyqQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPA----RPplyyfeEVEEKRAREREQLAAWYQpipEP 533
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1151933604 263 DRRNIP----------DSSPGSGHVHRGGPVGSALPASSGAPGPLAAQPAPATGP 307
Cdd:PRK10263 534 VKEPEPiksslkapsvAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSL 588
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
315-546 |
8.54e-03 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 38.29 E-value: 8.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 315 NPKYLFDTFVIGASNrfAHAAAVAVAEAPAKAYNP----LFIYGESGLGKTHLLHAIGHYARSlypgtrvrYVSSEEFTN 390
Cdd:PRK06620 10 SSKYHPDEFIVSSSN--DQAYNIIKNWQCGFGVNPykftLLIKGPSSSGKTYLTKIWQNLSNA--------YIIKDIFFN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1151933604 391 EFInsirdgkgdsfrkrYREMDILLVDDIqfladkESTQE-EFFHTFNTLHNANKQIVLSSDRPPKQLvTLEDrLRNRFE 469
Cdd:PRK06620 80 EEI--------------LEKYNAFIIEDI------ENWQEpALLHIFNIINEKQKYLLLTSSDKSRNF-TLPD-LSSRIK 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1151933604 470 WGLITDVQPPELETrIAILRKKAVQEQ-LNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLK 546
Cdd:PRK06620 138 SVLSILLNSPDDEL-IKILIFKHFSISsVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214
|
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