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Conserved domains on  [gi|1162405756|gb|OPX20468|]
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MAG: hypothetical protein BZ151_03960 [Desulfobacca sp. 4484_104]

Protein Classification

TIGR04076 family protein( domain architecture ID 10024345)

TIGR04076 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TIGR04076 TIGR04076
TIGR04076 family protein; Members of this protein family are uncharacterized. The only ...
 1-97 3.13e-13

TIGR04076 family protein; Members of this protein family are uncharacterized. The only invariant residue, and one of three other residues better than 90 percent conserved are both Cys. Phylogenetic profiling results and occasional fusion genes suggest a role for members of this family in redox reactions or iron cluster metabolism. Species occasionally have two or three copies.


:

Pssm-ID: 274964  Cd Length: 89  Bit Score: 59.65  E-value: 3.13e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162405756  1 MRLVIEV-KQIKGNCPV-YQVGDTFVLEQGYILEpvvsTRICMHSLASLLPYYVALVHGVNPVALGlspGDPKVAYVQCL 78
Cdd:TIGR04076  2 KKVRITVvKPIEGPCPCgHKVGDVFIVDGGLIPE----GFLCLYAWAAILPYVPALQRGGSYNDWM---NDDGVAIFCCP 74

                         90
                 ....*....|....*....
gi 1162405756 79 DPcettgGGTVLFAITRQD 97
Cdd:TIGR04076 75 DP-----DRPVIFRIERID 88
 
Name Accession Description Interval E-value
TIGR04076 TIGR04076
TIGR04076 family protein; Members of this protein family are uncharacterized. The only ...
 1-97 3.13e-13

TIGR04076 family protein; Members of this protein family are uncharacterized. The only invariant residue, and one of three other residues better than 90 percent conserved are both Cys. Phylogenetic profiling results and occasional fusion genes suggest a role for members of this family in redox reactions or iron cluster metabolism. Species occasionally have two or three copies.


Pssm-ID: 274964  Cd Length: 89  Bit Score: 59.65  E-value: 3.13e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162405756  1 MRLVIEV-KQIKGNCPV-YQVGDTFVLEQGYILEpvvsTRICMHSLASLLPYYVALVHGVNPVALGlspGDPKVAYVQCL 78
Cdd:TIGR04076  2 KKVRITVvKPIEGPCPCgHKVGDVFIVDGGLIPE----GFLCLYAWAAILPYVPALQRGGSYNDWM---NDDGVAIFCCP 74

                         90
                 ....*....|....*....
gi 1162405756 79 DPcettgGGTVLFAITRQD 97
Cdd:TIGR04076 75 DP-----DRPVIFRIERID 88
 
Name Accession Description Interval E-value
TIGR04076 TIGR04076
TIGR04076 family protein; Members of this protein family are uncharacterized. The only ...
 1-97 3.13e-13

TIGR04076 family protein; Members of this protein family are uncharacterized. The only invariant residue, and one of three other residues better than 90 percent conserved are both Cys. Phylogenetic profiling results and occasional fusion genes suggest a role for members of this family in redox reactions or iron cluster metabolism. Species occasionally have two or three copies.


Pssm-ID: 274964  Cd Length: 89  Bit Score: 59.65  E-value: 3.13e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162405756  1 MRLVIEV-KQIKGNCPV-YQVGDTFVLEQGYILEpvvsTRICMHSLASLLPYYVALVHGVNPVALGlspGDPKVAYVQCL 78
Cdd:TIGR04076  2 KKVRITVvKPIEGPCPCgHKVGDVFIVDGGLIPE----GFLCLYAWAAILPYVPALQRGGSYNDWM---NDDGVAIFCCP 74

                         90
                 ....*....|....*....
gi 1162405756 79 DPcettgGGTVLFAITRQD 97
Cdd:TIGR04076 75 DP-----DRPVIFRIERID 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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