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Conserved domains on  [gi|1167382333|gb|OQB98968|]
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Transposase [Spirochaetes bacterium ADurb.Bin110]

Protein Classification

transposase( domain architecture ID 11459289)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism; similar to Escherichia coli IS150 protein InsAB

CATH:  1.10.10.10
Gene Ontology:  GO:0006313|GO:0003677|GO:0004803
PubMed:  20885819

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
2-91 8.18e-15

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


:

Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 63.79  E-value: 8.18e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1167382333   2 RKHYDKGFKAKVAIEAIKGEKTIQELATIYEVHPNLIALWKKQLTDNAPQLFeksEKDKEKEEARHKEEELYKEIGQLQV 81
Cdd:COG2963     5 RRRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGF---PGDGRTTPEQAEIRRLRKELRRLEM 81

                          90
                  ....*....|
gi 1167382333  82 ENEFLKKKYR 91
Cdd:COG2963    82 ENDILKKAAA 91
 
Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
2-91 8.18e-15

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 63.79  E-value: 8.18e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1167382333   2 RKHYDKGFKAKVAIEAIKGEKTIQELATIYEVHPNLIALWKKQLTDNAPQLFeksEKDKEKEEARHKEEELYKEIGQLQV 81
Cdd:COG2963     5 RRRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGF---PGDGRTTPEQAEIRRLRKELRRLEM 81

                          90
                  ....*....|
gi 1167382333  82 ENEFLKKKYR 91
Cdd:COG2963    82 ENDILKKAAA 91
transpos_IS3 NF033516
IS3 family transposase;
9-91 4.10e-12

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 60.27  E-value: 4.10e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1167382333   9 FKAKVAIEAIKGEKTIQELATIYEVHPNLIALWKKQLTDNAPQLFEKSEKDKEKEEARhKEEELYKEIGQLQVENEFLKK 88
Cdd:NF033516    2 FKLEAVREVLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAGRLKELLTPEEE-ENRRLKRELAELRLENEILKK 80


                  ...
gi 1167382333  89 KYR 91
Cdd:NF033516   81 ARK 83
Herpes_BLRF2 pfam05812
Herpesvirus BLRF2 protein; This family consists of several Herpesvirus BLRF2 proteins.
 70-99 3.66e-03

Herpesvirus BLRF2 protein; This family consists of several Herpesvirus BLRF2 proteins.


Pssm-ID: 283470  Cd Length: 119  Bit Score: 34.10  E-value: 3.66e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1167382333  70 EELYKEIGQLQVENEFLKKKYRQMYGTEPR 99
Cdd:pfam05812   5 EDLAAELTKLQMENKALKKKLRSSVGPKDR 34
 
Name Accession Description Interval E-value
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
2-91 8.18e-15

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 63.79  E-value: 8.18e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1167382333   2 RKHYDKGFKAKVAIEAIKGEKTIQELATIYEVHPNLIALWKKQLTDNAPQLFeksEKDKEKEEARHKEEELYKEIGQLQV 81
Cdd:COG2963     5 RRRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGF---PGDGRTTPEQAEIRRLRKELRRLEM 81

                          90
                  ....*....|
gi 1167382333  82 ENEFLKKKYR 91
Cdd:COG2963    82 ENDILKKAAA 91
transpos_IS3 NF033516
IS3 family transposase;
9-91 4.10e-12

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 60.27  E-value: 4.10e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1167382333   9 FKAKVAIEAIKGEKTIQELATIYEVHPNLIALWKKQLTDNAPQLFEKSEKDKEKEEARhKEEELYKEIGQLQVENEFLKK 88
Cdd:NF033516    2 FKLEAVREVLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAGRLKELLTPEEE-ENRRLKRELAELRLENEILKK 80


                  ...
gi 1167382333  89 KYR 91
Cdd:NF033516   81 ARK 83
Herpes_BLRF2 pfam05812
Herpesvirus BLRF2 protein; This family consists of several Herpesvirus BLRF2 proteins.
 70-99 3.66e-03

Herpesvirus BLRF2 protein; This family consists of several Herpesvirus BLRF2 proteins.


Pssm-ID: 283470  Cd Length: 119  Bit Score: 34.10  E-value: 3.66e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1167382333  70 EELYKEIGQLQVENEFLKKKYRQMYGTEPR 99
Cdd:pfam05812   5 EDLAAELTKLQMENKALKKKLRSSVGPKDR 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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