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Conserved domains on  [gi|1167449377|gb|OQC55517|]
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YcfA-like protein [Deltaproteobacteria bacterium ADurb.Bin022]

Protein Classification

type II toxin-antitoxin system HicA family toxin( domain architecture ID 10004385)

type II toxin-antitoxin (TA) system HicA family toxin similar to Escherichia coli HicA, part of the HicA-HicB TA module that plays a role in inducing cleavage of mRNA and tmRNA (transfer-mRNA), thereby preventing translation; the hicAB locus is transcribed in response to amino acid and carbon starvation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YcfA COG1724
Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family ...
 1-59 1.34e-09

Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only];


:

Pssm-ID: 441330  Cd Length: 72  Bit Score: 48.31  E-value: 1.34e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1167449377  1 MKRQVLLRRLKKEGCELFRSGGNHDIYVNTKTGKKQPVPRHS--EIDEHLARHILRYLGLE 59
Cdd:COG1724    7 MKGRELIKALEKLGFVLVRQKGSHHILKHPDKGRTVTVPRHPgkELPPGTLRSILKQAGLT 67
 
Name Accession Description Interval E-value
YcfA COG1724
Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family ...
 1-59 1.34e-09

Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only];


Pssm-ID: 441330  Cd Length: 72  Bit Score: 48.31  E-value: 1.34e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1167449377  1 MKRQVLLRRLKKEGCELFRSGGNHDIYVNTKTGKKQPVPRHS--EIDEHLARHILRYLGLE 59
Cdd:COG1724    7 MKGRELIKALEKLGFVLVRQKGSHHILKHPDKGRTVTVPRHPgkELPPGTLRSILKQAGLT 67
HicA_toxin pfam07927
HicA toxin of bacterial toxin-antitoxin,; HicA_toxin is a bacterial family of toxins that act ...
 6-57 1.33e-07

HicA toxin of bacterial toxin-antitoxin,; HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.


Pssm-ID: 462317  Cd Length: 56  Bit Score: 42.90  E-value: 1.33e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1167449377  6 LLRRLKKEGCELFRSGGNHDIYVNTKTGKKQPVPRHS--EIDEHLARHILRYLG 57
Cdd:pfam07927  3 VIKLLEKLGFELVRQKGSHVIFKHPDGRGIVTVPPHPgkELKPGTLKSILKQAG 56
 
Name Accession Description Interval E-value
YcfA COG1724
Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family ...
 1-59 1.34e-09

Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only];


Pssm-ID: 441330  Cd Length: 72  Bit Score: 48.31  E-value: 1.34e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1167449377  1 MKRQVLLRRLKKEGCELFRSGGNHDIYVNTKTGKKQPVPRHS--EIDEHLARHILRYLGLE 59
Cdd:COG1724    7 MKGRELIKALEKLGFVLVRQKGSHHILKHPDKGRTVTVPRHPgkELPPGTLRSILKQAGLT 67
HicA_toxin pfam07927
HicA toxin of bacterial toxin-antitoxin,; HicA_toxin is a bacterial family of toxins that act ...
 6-57 1.33e-07

HicA toxin of bacterial toxin-antitoxin,; HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.


Pssm-ID: 462317  Cd Length: 56  Bit Score: 42.90  E-value: 1.33e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1167449377  6 LLRRLKKEGCELFRSGGNHDIYVNTKTGKKQPVPRHS--EIDEHLARHILRYLG 57
Cdd:pfam07927  3 VIKLLEKLGFELVRQKGSHVIFKHPDGRGIVTVPPHPgkELKPGTLKSILKQAG 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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