|
Name |
Accession |
Description |
Interval |
E-value |
| PRK04841 |
PRK04841 |
HTH-type transcriptional regulator MalT; |
8-505 |
2.13e-54 |
|
HTH-type transcriptional regulator MalT;
Pssm-ID: 235315 [Multi-domain] Cd Length: 903 Bit Score: 205.56 E-value: 2.13e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 8 IHTKLTPPPPRCYTLHRPRLTALLLKTLDHRLTVIHAGTGYGKSTALASLATQDVPLCWYSIAEEDADPFVFLLHLIHAC 87
Cdd:PRK04841 3 IPSKLSRPVRLHNTVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 88 RSVLPDMPDAPLVMLERHSErLALSTMSADergpavwngivdaLVNSLSDaLDRPTLLILDDYHLVSEaPLITKIVDRLI 167
Cdd:PRK04841 83 QQATNGHCSKSEALAQKRQY-ASLSSLFAQ-------------LFIELAD-WHQPLYLVIDDYHLITN-PEIHEAMRFFL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 168 GYAPAELHIVLAGRHPPSLpGLIAWRARGELLKIDHKDMAFTPDEVSALFNEQYGHQLTPDEVQLLVEKTEGWAIALQLI 247
Cdd:PRK04841 147 RHQPENLTLVVLSRNLPPL-GIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLI 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 248 WQGLRSGVitdvftsfaSSARFSFVDITGDRHSldDLFAYLAQEVLDRQPLDIQSFMLSTSVLHRMSPAACDALRQTSDS 327
Cdd:PRK04841 226 ALSARQNN---------SSLHDSARRLAGINAS--HLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENG 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 328 RTLLDYLHDRDLFLVALGKGQS--RYQRLFHDFLQSQ---VPSDQASDLHHRAADYYRSVGDDEKAIYHLLAAAAHGAAA 402
Cdd:PRK04841 295 QMRLEELERQGLFIQRMDDSGEwfRYHPLFASFLRHRcqwELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLR 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 403 ALLDEMGERMVRGGRLETLARWIGQLPPAVLEQHPALLARLGDVARLRSHFEEALGWYAQAEAHYraKGDRMGASRALQG 482
Cdd:PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQEL--KDRNIELDGTLQA 452
|
490 500
....*....|....*....|....*...
gi 1176213379 483 Q-----ALVYLDTVRPARAESLLAEALR 505
Cdd:PRK04841 453 EfnalrAQVAINDGDPEEAERLAELALA 480
|
|
| DnrI |
COG3629 |
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ... |
850-1098 |
1.17e-47 |
|
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];
Pssm-ID: 442847 [Multi-domain] Cd Length: 244 Bit Score: 170.41 E-value: 1.17e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 850 RLRVQTLGPFRVWRGAEEIDereWRRSKALQLFQLLLTRRGRMLQREEIADILWPDLATDAIQRNFKVALNALNKALEPd 929
Cdd:COG3629 1 PLRFRLLGPLEVRVDGRPVP---LGGPKQRALLAYLALRAGRPVSRDRLADLLWGDDPPASARANLRTYVSRLRRALGP- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 930 rspgAESAYVARHGATYGLRTSADlWLDADEFQRLIDAGDRCQNDLDACADAYQRALNLYAGEYLQDALYQDWTSEERER 1009
Cdd:COG3629 77 ----AGGDLLVTRGGGYRLDVDPD-EVDLHRFERLVARARAAAGDPAAAAALLREALALWRGPPLAGLPFEPWLEAERAR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 1010 LLALYLRTAEKLVAVRVNRGRYDEAISLCRRILARDDCWERAYRLMMAAYARQGNRARALRVYQICEEALRRELDVEPGP 1089
Cdd:COG3629 152 LEELRLAALEALAEALLALGRHAEALAELRRLVAAHPLRERLHRLLMRALYRAGRRAEALAAYRRLRRRLADELGVEPGP 231
|
....*....
gi 1176213379 1090 ITRRLYEQI 1098
Cdd:COG3629 232 ELRALHRRI 240
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
956-1098 |
5.77e-33 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 124.72 E-value: 5.77e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 956 LDADEFQRLIDAG-DRCQNDLDACADAYQRALNLYAGEYLQDALYQDWTSEERERLLALYLRTAEKLVAVRVNRGRYDEA 1034
Cdd:smart01043 1 VDVDRFERLVAAArAALAADPEAALALLEAALALYRGPLLADVPDEDWAEAERERLRELRLEALEALAEALLALGRHEEA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176213379 1035 ISLCRRILARDDCWERAYRLMMAAYARQGNRARALRVYQICEEALRRELDVEPGPITRRLYEQI 1098
Cdd:smart01043 81 LALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRLLADELGVEPGPELRALYEAI 144
|
|
| BTAD |
pfam03704 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
956-1098 |
9.26e-25 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 397662 [Multi-domain] Cd Length: 146 Bit Score: 101.20 E-value: 9.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 956 LDADEFQRLIDAGDRCQNDLDAC--ADAYQRALNLYAGEYLQDALYQDWTSEERERLLALYLRTAEKLVAVRVNRGRYDE 1033
Cdd:pfam03704 1 VDLARFERLVRAGRAALAAGDPAeaARLLRAALALWRGPALADLPAGPWLEAERARLEELRLEALEARAEADLRLGRHEE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1176213379 1034 AISLCRRILARDDCWERAYRLMMAAYARQGNRARALRVYQICEEALRRELDVEPGPITRRLYEQI 1098
Cdd:pfam03704 81 ALPELEALVAAHPLRERLHRLLMLALYRSGRQAEALAVYRRLRRVLAEELGVEPGPELRRLHQEI 145
|
|
| BTAD |
cd15831 |
Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation ... |
956-1098 |
2.53e-20 |
|
Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.
Pssm-ID: 276938 [Multi-domain] Cd Length: 146 Bit Score: 88.43 E-value: 2.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 956 LDADEFQRLIDAGDRC--QNDLDACADAYQRALNLYAGEYLQDALYQDWTSEERERLLALYLRTAEKLVAVRVNRGRYDE 1033
Cdd:cd15831 1 VDLQRFERLVAEGRRAlaAGDPEEAARLLRAALALWRGPALADVRAGPVLEAEAARLEELRLRALEARIEADLALGRHRE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1176213379 1034 AISLCRRILARDDCWERAYRLMMAAYARQGNRARALRVYQICEEALRRELDVEPGPITRRLYEQI 1098
Cdd:cd15831 81 LVAELRALVAEHPLRERLHRQLMLALYRSGRQAEALRVYRRLRRRLAEELGVEPGPELRRLHQAI 145
|
|
| MalT |
COG2909 |
ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription]; |
144-245 |
1.10e-09 |
|
ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription];
Pssm-ID: 442153 [Multi-domain] Cd Length: 184 Bit Score: 58.95 E-value: 1.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 144 LLILDDYHLVSEAPLitkivDRLIGYAPAELHIVLAGRHPPslpgLIAWRARGELLKIDhkdmaFTPDEVSALFnEQYGH 223
Cdd:COG2909 1 ALVLDDYHLIDDIHL-----AFLLRHLPPNLHLVLASRTDP----LARLRARLELRADD-----LRREEAAALL-RRRLL 65
|
90 100
....*....|....*....|..
gi 1176213379 224 QLTPDEVQLLVEKTEGWAIALQ 245
Cdd:COG2909 66 PLSEEDAARLAERTEGWARLAL 87
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
440-937 |
2.10e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 55.63 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 440 LARLGDVARLRSHFEEALGWYAQAEAHYRAKGDRMGASRALQGQALVYLDtvRPARAESLLAEALRLSDGSQDRQNRAHL 519
Cdd:COG3899 755 LYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLLLG--DYEEAYEFGELALALAERLGDRRLEARA 832
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 520 LELLAENQLNLGHPGDAEQLRAEARQWREDDPEESQLnvRVLLRTGQLNRARATLENQVEAEQSADDAPALGRAHQSHRE 599
Cdd:COG3899 833 LFNLGFILHWLGPLREALELLREALEAGLETGDAALA--LLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAA 910
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 600 AQLLLSLIYAFLGEADAAFHAAQAGIAIGQRIDSPLVTAIGYMRLGHAWLIRPEPDAHLRAIECFKQAINLGDVVAVRRT 679
Cdd:COG3899 911 AALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAA 990
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 680 QVEAQWGLCRAYGFHGDLIKAEEATATGIRIGRRAgdpwAVATVELALGASYVLAGRYSEAVEILTRVSVAFRDCSDSHG 759
Cdd:COG3899 991 LEAAAAALLALLAAAAAAAAAAAALAAALLAAALA----ALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAA 1066
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 760 RAAARLWLGLAYLRLDQNERLAKVTDELLELTETHGYDHLFTQHAILGPPDNRMLVPLLLKARHRRVRPSAATRLLDRMG 839
Cdd:COG3899 1067 ALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALAL 1146
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 840 LPDVEFHPGYRLRVQTLGPFRVWRGAEEIDEREWRRSKALQLFQLLLTRRGRMLQREEIADILWPDLATDAIQRNFKVAL 919
Cdd:COG3899 1147 AALLLLAALLLALALLLLALAALALAAALAALAAALLAAAAAAAAAAALLAALLALAARLAALLALALLALEAAALLLLL 1226
|
490
....*....|....*...
gi 1176213379 920 NALNKALEPDRSPGAESA 937
Cdd:COG3899 1227 LLAALALAAALLALRLLA 1244
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK04841 |
PRK04841 |
HTH-type transcriptional regulator MalT; |
8-505 |
2.13e-54 |
|
HTH-type transcriptional regulator MalT;
Pssm-ID: 235315 [Multi-domain] Cd Length: 903 Bit Score: 205.56 E-value: 2.13e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 8 IHTKLTPPPPRCYTLHRPRLTALLLKTLDHRLTVIHAGTGYGKSTALASLATQDVPLCWYSIAEEDADPFVFLLHLIHAC 87
Cdd:PRK04841 3 IPSKLSRPVRLHNTVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 88 RSVLPDMPDAPLVMLERHSErLALSTMSADergpavwngivdaLVNSLSDaLDRPTLLILDDYHLVSEaPLITKIVDRLI 167
Cdd:PRK04841 83 QQATNGHCSKSEALAQKRQY-ASLSSLFAQ-------------LFIELAD-WHQPLYLVIDDYHLITN-PEIHEAMRFFL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 168 GYAPAELHIVLAGRHPPSLpGLIAWRARGELLKIDHKDMAFTPDEVSALFNEQYGHQLTPDEVQLLVEKTEGWAIALQLI 247
Cdd:PRK04841 147 RHQPENLTLVVLSRNLPPL-GIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLI 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 248 WQGLRSGVitdvftsfaSSARFSFVDITGDRHSldDLFAYLAQEVLDRQPLDIQSFMLSTSVLHRMSPAACDALRQTSDS 327
Cdd:PRK04841 226 ALSARQNN---------SSLHDSARRLAGINAS--HLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENG 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 328 RTLLDYLHDRDLFLVALGKGQS--RYQRLFHDFLQSQ---VPSDQASDLHHRAADYYRSVGDDEKAIYHLLAAAAHGAAA 402
Cdd:PRK04841 295 QMRLEELERQGLFIQRMDDSGEwfRYHPLFASFLRHRcqwELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLR 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 403 ALLDEMGERMVRGGRLETLARWIGQLPPAVLEQHPALLARLGDVARLRSHFEEALGWYAQAEAHYraKGDRMGASRALQG 482
Cdd:PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQEL--KDRNIELDGTLQA 452
|
490 500
....*....|....*....|....*...
gi 1176213379 483 Q-----ALVYLDTVRPARAESLLAEALR 505
Cdd:PRK04841 453 EfnalrAQVAINDGDPEEAERLAELALA 480
|
|
| DnrI |
COG3629 |
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ... |
850-1098 |
1.17e-47 |
|
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];
Pssm-ID: 442847 [Multi-domain] Cd Length: 244 Bit Score: 170.41 E-value: 1.17e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 850 RLRVQTLGPFRVWRGAEEIDereWRRSKALQLFQLLLTRRGRMLQREEIADILWPDLATDAIQRNFKVALNALNKALEPd 929
Cdd:COG3629 1 PLRFRLLGPLEVRVDGRPVP---LGGPKQRALLAYLALRAGRPVSRDRLADLLWGDDPPASARANLRTYVSRLRRALGP- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 930 rspgAESAYVARHGATYGLRTSADlWLDADEFQRLIDAGDRCQNDLDACADAYQRALNLYAGEYLQDALYQDWTSEERER 1009
Cdd:COG3629 77 ----AGGDLLVTRGGGYRLDVDPD-EVDLHRFERLVARARAAAGDPAAAAALLREALALWRGPPLAGLPFEPWLEAERAR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 1010 LLALYLRTAEKLVAVRVNRGRYDEAISLCRRILARDDCWERAYRLMMAAYARQGNRARALRVYQICEEALRRELDVEPGP 1089
Cdd:COG3629 152 LEELRLAALEALAEALLALGRHAEALAELRRLVAAHPLRERLHRLLMRALYRAGRRAEALAAYRRLRRRLADELGVEPGP 231
|
....*....
gi 1176213379 1090 ITRRLYEQI 1098
Cdd:COG3629 232 ELRALHRRI 240
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
956-1098 |
5.77e-33 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 124.72 E-value: 5.77e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 956 LDADEFQRLIDAG-DRCQNDLDACADAYQRALNLYAGEYLQDALYQDWTSEERERLLALYLRTAEKLVAVRVNRGRYDEA 1034
Cdd:smart01043 1 VDVDRFERLVAAArAALAADPEAALALLEAALALYRGPLLADVPDEDWAEAERERLRELRLEALEALAEALLALGRHEEA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176213379 1035 ISLCRRILARDDCWERAYRLMMAAYARQGNRARALRVYQICEEALRRELDVEPGPITRRLYEQI 1098
Cdd:smart01043 81 LALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRLLADELGVEPGPELRALYEAI 144
|
|
| BTAD |
pfam03704 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
956-1098 |
9.26e-25 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 397662 [Multi-domain] Cd Length: 146 Bit Score: 101.20 E-value: 9.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 956 LDADEFQRLIDAGDRCQNDLDAC--ADAYQRALNLYAGEYLQDALYQDWTSEERERLLALYLRTAEKLVAVRVNRGRYDE 1033
Cdd:pfam03704 1 VDLARFERLVRAGRAALAAGDPAeaARLLRAALALWRGPALADLPAGPWLEAERARLEELRLEALEARAEADLRLGRHEE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1176213379 1034 AISLCRRILARDDCWERAYRLMMAAYARQGNRARALRVYQICEEALRRELDVEPGPITRRLYEQI 1098
Cdd:pfam03704 81 ALPELEALVAAHPLRERLHRLLMLALYRSGRQAEALAVYRRLRRVLAEELGVEPGPELRRLHQEI 145
|
|
| BTAD |
cd15831 |
Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation ... |
956-1098 |
2.53e-20 |
|
Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.
Pssm-ID: 276938 [Multi-domain] Cd Length: 146 Bit Score: 88.43 E-value: 2.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 956 LDADEFQRLIDAGDRC--QNDLDACADAYQRALNLYAGEYLQDALYQDWTSEERERLLALYLRTAEKLVAVRVNRGRYDE 1033
Cdd:cd15831 1 VDLQRFERLVAEGRRAlaAGDPEEAARLLRAALALWRGPALADVRAGPVLEAEAARLEELRLRALEARIEADLALGRHRE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1176213379 1034 AISLCRRILARDDCWERAYRLMMAAYARQGNRARALRVYQICEEALRRELDVEPGPITRRLYEQI 1098
Cdd:cd15831 81 LVAELRALVAEHPLRERLHRQLMLALYRSGRQAEALRVYRRLRRRLAEELGVEPGPELRRLHQAI 145
|
|
| MalT |
COG2909 |
ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription]; |
144-245 |
1.10e-09 |
|
ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription];
Pssm-ID: 442153 [Multi-domain] Cd Length: 184 Bit Score: 58.95 E-value: 1.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 144 LLILDDYHLVSEAPLitkivDRLIGYAPAELHIVLAGRHPPslpgLIAWRARGELLKIDhkdmaFTPDEVSALFnEQYGH 223
Cdd:COG2909 1 ALVLDDYHLIDDIHL-----AFLLRHLPPNLHLVLASRTDP----LARLRARLELRADD-----LRREEAAALL-RRRLL 65
|
90 100
....*....|....*....|..
gi 1176213379 224 QLTPDEVQLLVEKTEGWAIALQ 245
Cdd:COG2909 66 PLSEEDAARLAERTEGWARLAL 87
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
440-937 |
2.10e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 55.63 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 440 LARLGDVARLRSHFEEALGWYAQAEAHYRAKGDRMGASRALQGQALVYLDtvRPARAESLLAEALRLSDGSQDRQNRAHL 519
Cdd:COG3899 755 LYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLLLG--DYEEAYEFGELALALAERLGDRRLEARA 832
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 520 LELLAENQLNLGHPGDAEQLRAEARQWREDDPEESQLnvRVLLRTGQLNRARATLENQVEAEQSADDAPALGRAHQSHRE 599
Cdd:COG3899 833 LFNLGFILHWLGPLREALELLREALEAGLETGDAALA--LLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAA 910
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 600 AQLLLSLIYAFLGEADAAFHAAQAGIAIGQRIDSPLVTAIGYMRLGHAWLIRPEPDAHLRAIECFKQAINLGDVVAVRRT 679
Cdd:COG3899 911 AALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAA 990
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 680 QVEAQWGLCRAYGFHGDLIKAEEATATGIRIGRRAgdpwAVATVELALGASYVLAGRYSEAVEILTRVSVAFRDCSDSHG 759
Cdd:COG3899 991 LEAAAAALLALLAAAAAAAAAAAALAAALLAAALA----ALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAA 1066
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 760 RAAARLWLGLAYLRLDQNERLAKVTDELLELTETHGYDHLFTQHAILGPPDNRMLVPLLLKARHRRVRPSAATRLLDRMG 839
Cdd:COG3899 1067 ALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALAL 1146
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 840 LPDVEFHPGYRLRVQTLGPFRVWRGAEEIDEREWRRSKALQLFQLLLTRRGRMLQREEIADILWPDLATDAIQRNFKVAL 919
Cdd:COG3899 1147 AALLLLAALLLALALLLLALAALALAAALAALAAALLAAAAAAAAAAALLAALLALAARLAALLALALLALEAAALLLLL 1226
|
490
....*....|....*...
gi 1176213379 920 NALNKALEPDRSPGAESA 937
Cdd:COG3899 1227 LLAALALAAALLALRLLA 1244
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
877-1108 |
1.59e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 47.80 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 877 KALQLFQllltrrgRMLQREEIADILWPDLATDAIQR-NFKVALNALNKALEPDrsPGAESAYVARhgatyglrtsADLW 955
Cdd:COG2956 60 RAIRIHQ-------KLLERDPDRAEALLELAQDYLKAgLLDRAEELLEKLLELD--PDDAEALRLL----------AEIY 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 956 LDADEFQRLIDAGDRCQNDLDACADAYQRALNLY--------AGEYLQDALYQDWTSEERERLLA-LYLRtaeklvavrv 1026
Cdd:COG2956 121 EQEGDWEKAIEVLERLLKLGPENAHAYCELAELYleqgdydeAIEALEKALKLDPDCARALLLLAeLYLE---------- 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 1027 nRGRYDEAISLCRRILARDDCWERAYRLMMAAYARQGNRARALRVYqicEEALRRELDVEPGPITRRLYEQISGDAPARD 1106
Cdd:COG2956 191 -QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELL---RKALELDPSDDLLLALADLLERKEGLEAALA 266
|
..
gi 1176213379 1107 WV 1108
Cdd:COG2956 267 LL 268
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
416-781 |
6.01e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 47.32 E-value: 6.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 416 GRLETLARWIGQLPPAVLEQHPALLARLGDVARLRSHFEEALGWYAQAEAHYRAKGDRMGASRALQGQALVYLDTVRPAR 495
Cdd:COG3903 559 GLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAA 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 496 AESLLAEALRLSDGSQDRQNRAHLLELLAENQLNLGHPGDAEQLRAEARQWREDDPEESQLNVRVLLRTGQLNRARATLE 575
Cdd:COG3903 639 AAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAA 718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 576 NQVEAEQSADDAPALGRAHQSHREAQLLLSLIYAFLGEADAAFHAAQAGIAIGQRIDSPLVTAIGYMRLGHAWLIRPEPD 655
Cdd:COG3903 719 AAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAA 798
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 656 AHLRAIECFK---QAINLGDVVAVRRTQVEAQWGLCRAYGFHGDLIKAEEATATGIRIGRRAGDPWAVATVELALGASYV 732
Cdd:COG3903 799 AAAAAAAAAAaaaAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAAAAA 878
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1176213379 733 LAGRYSEAVEILTRVSVAFRDCSDSHGRAAARLWLGLAYLRLDQNERLA 781
Cdd:COG3903 879 AAAAALLAAAAAAAAAAAAAAAAAAALAAAAAAAAAAALAAAAAAAAAA 927
|
|
| CadC1 |
COG3710 |
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; |
856-943 |
7.22e-05 |
|
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
Pssm-ID: 442924 [Multi-domain] Cd Length: 106 Bit Score: 42.97 E-value: 7.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 856 LGPFRVWRGAEEI--DEREWR-RSKALQLFQLLLTRRGRMLQREEIADILWPDLA-TDAiqrNFKVALNALNKALEPDRS 931
Cdd:COG3710 5 FGDFRLDPARRELlrDGEPVRlSPRAFDLLLLLLEHPGRVVSRDELLAAVWPGRVvSDN---SLTQAISRLRKALGDDGL 81
|
90
....*....|..
gi 1176213379 932 PGAESAYVARHG 943
Cdd:COG3710 82 EPRLIRTVPRRG 93
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
365-581 |
4.39e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.56 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 365 SDQASDLHHRAADYYRSVGDDEKAI-YHLLAAAAHGAAAALLDEMGERMVRGGRLETLARWIGQLpPAVLEQHPALLARL 443
Cdd:COG2956 72 DPDRAEALLELAQDYLKAGLLDRAEeLLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL-LKLGPENAHAYCEL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 444 GDVARLRSHFEEALGWYAQAEAHYRakgdrmGASRALQGQALVYLDTVRPARAESLLAEALRLSDgsqdrqNRAHLLELL 523
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDP------DCARALLLLAELYLEQGDYEEAIAALERALEQDP------DYLPALPRL 218
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 524 AENQLNLghpGDAEQLRAEARQWREDDPEESQLN--VRVLLRTGQLNRARATLENQVEAE 581
Cdd:COG2956 219 AELYEKL---GDPEEALELLRKALELDPSDDLLLalADLLERKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
878-1075 |
4.73e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.21 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 878 ALQLFQLLLTRRGRMLQREEIAD-ILWPDLATDAIQRNFKVALNALNKALEPDRSPGAESAYVARHGATYGLRTSADLWL 956
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAElALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 957 DADEFQRLidagdrcQNDLDACADAYQRALNLY-----AGEYLQDALYQDWTSEERERLLALYLRTAEKLVAVRVNRG-- 1029
Cdd:COG3914 83 LAALLLQA-------LGRYEEALALYRRALALNpdnaeALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGea 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1176213379 1030 -----RYDEAISLCRRILARDDCWERAYRLMMAAYARQGNRARALRVYQIC 1075
Cdd:COG3914 156 lrrlgRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
456-789 |
5.11e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.18 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 456 ALGWYAQAEAhyrakgdrmgasralqgqalvYLDTVRPARAESLLAEALRLSDGSQDrqnrahLLELLAENQLNLGHPGD 535
Cdd:COG2956 8 ALGWYFKGLN---------------------YLLNGQPDKAIDLLEEALELDPETVE------AHLALGNLYRRRGEYDR 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 536 AEQLRAEARQWREDDPEESQLNVRVLLRTGQLNRARATLEnqvEAEQSADDAPalgrahqshrEAQLLLSLIYAFLGEAD 615
Cdd:COG2956 61 AIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE---KLLELDPDDA----------EALRLLAEIYEQEGDWE 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 616 AAFHAAQAGIAIGQRidsplvTAIGYMRLGHAWLIRPEPDAhlrAIECFKQAInlgdvvAVRRTQVEAQWGLCRAYGFHG 695
Cdd:COG2956 128 KAIEVLERLLKLGPE------NAHAYCELAELYLEQGDYDE---AIEALEKAL------KLDPDCARALLLLAELYLEQG 192
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 696 DLIKAEEATATGIRIgrragDPWAVATVELaLGASYVLAGRYSEAVEILtrvsvafRDCSDSHGRAAARLWLGLAYLRLD 775
Cdd:COG2956 193 DYEEAIAALERALEQ-----DPDYLPALPR-LAELYEKLGDPEEALELL-------RKALELDPSDDLLLALADLLERKE 259
|
330
....*....|....
gi 1176213379 776 QNERLAKVTDELLE 789
Cdd:COG2956 260 GLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
434-599 |
1.34e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.02 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 434 EQHPALLARLGDVARlrshfeeALGWYAQAEAHY-RAKGDRMGASRALQGQALVYLDTVRPARAESLLAEALRLSDGSqd 512
Cdd:COG2956 73 PDRAEALLELAQDYL-------KAGLLDRAEELLeKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN-- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 513 rqnrAHLLELLAENQLNLGHPGDAEQLRAEARQWREDDPEESQLNVRVLLRTGQLNRARATLENQVeaEQSADDAPALGR 592
Cdd:COG2956 144 ----AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERAL--EQDPDYLPALPR 217
|
....*..
gi 1176213379 593 AHQSHRE 599
Cdd:COG2956 218 LAELYEK 224
|
|
| Trans_reg_C |
smart00862 |
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ... |
876-932 |
3.19e-03 |
|
Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Pssm-ID: 214866 [Multi-domain] Cd Length: 76 Bit Score: 37.53 E-value: 3.19e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1176213379 876 SKALQLFQLLLTRRGRMLQREEIADILWPDlATDAIQRNFKVALNALNKALEPDRSP 932
Cdd:smart00862 8 PKEFRLLELLLRNPGRVVSREELLEAVWGD-DEDVDDNTLDVHISRLRKKLEDDGDP 63
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
371-587 |
3.59e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 41.52 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 371 LHHRAADYYRSVGDDEKAIYHLLAAAAHGAAAALLDEMGERMVRGGRLETLARWIGQLPPAVLEQHPALLARLGDVARLR 450
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176213379 451 SHFE--EALGWYAQAEAHYRAKGDRMGAS-RALQGQALVYLDTVRPARAESLLAEALRLS-DGSQDRQNRAHLLEllaen 526
Cdd:COG3914 83 LAALllQALGRYEEALALYRRALALNPDNaEALFNLGNLLLALGRLEEALAALRRALALNpDFAEAYLNLGEALR----- 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1176213379 527 qlNLGHPGDAEQLRAEARQWREDDPEESQLNVRVLLRTGQLNRARATLENQVEAEQSADDA 587
Cdd:COG3914 158 --RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| |
