NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1176785333|gb|OQZ03210|]
View 

MAG: hypothetical protein B6D35_00140, partial [Candidatus Brocadia sp. UTAMX2]

Protein Classification

transposase domain-containing protein( domain architecture ID 581115)

transposase domain-containing protein may bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0004803
PubMed:  12068970|20615441

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_ISL3 super family cl47205
Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains ...
 1-65 8.54e-14

Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.


The actual alignment was detected with superfamily member pfam01610:

Pssm-ID: 426344  Cd Length: 238  Bit Score: 63.77  E-value: 8.54e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1176785333   1 YDKFHVIRHLGEALGTVRKMEYVRLSGKDRSYIKGQKYTLLSNRENLTLDGRKALKKLLTANKRL 65
Cdd:pfam01610  79 FDRFHVVKLANEALDEVRRREQKELKERLRKGLKGSRWLLLKNPENLTEEQKQRLDELLDLSPKL 143
 
Name Accession Description Interval E-value
DDE_Tnp_ISL3 pfam01610
Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains ...
 1-65 8.54e-14

Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.


Pssm-ID: 426344  Cd Length: 238  Bit Score: 63.77  E-value: 8.54e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1176785333   1 YDKFHVIRHLGEALGTVRKMEYVRLSGKDRSYIKGQKYTLLSNRENLTLDGRKALKKLLTANKRL 65
Cdd:pfam01610  79 FDRFHVVKLANEALDEVRRREQKELKERLRKGLKGSRWLLLKNPENLTEEQKQRLDELLDLSPKL 143
COG3464 COG3464
Transposase [Mobilome: prophages, transposons];
1-76 3.45e-13

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442687 [Multi-domain]  Cd Length: 287  Bit Score: 62.56  E-value: 3.45e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1176785333   1 YDKFHVIRHLGEALGTVRKMEYVRL---SGKDRSYIKGQKYTLLSNRENLTLDGRKALKKLLTANKRLcvkGAIWTIVE 76
Cdd:COG3464   121 ADRFHVVKLLNEALDKVRRREQRELrgrRGRERRPLKRSRYLLLKNPENLTEKQKERLDELLSASPEL---KRAYELKE 196
transpos_ISL3 NF033550
ISL3 family transposase;
1-88 1.31e-12

ISL3 family transposase;


Pssm-ID: 468079 [Multi-domain]  Cd Length: 369  Bit Score: 61.06  E-value: 1.31e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176785333   1 YDKFHVIRHLGEALGTVRKMEYVRLSGKDRSY--IKGQKYTLLSNRENLTLDGRKALKKLLTANKRLC----VKGAIWTI 74
Cdd:NF033550  205 ADRFHVVKLANEALDKVRRREQKELRKRRRERktLKRYRWLLLKNPENLTEKQRERLEALLEASPELAkayeLKELLRDI 284

                          90
                  ....*....|....
gi 1176785333  75 VELSDRGMGKEVFR 88
Cdd:NF033550  285 WREKDPDEARELLE 298
 
Name Accession Description Interval E-value
DDE_Tnp_ISL3 pfam01610
Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains ...
 1-65 8.54e-14

Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.


Pssm-ID: 426344  Cd Length: 238  Bit Score: 63.77  E-value: 8.54e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1176785333   1 YDKFHVIRHLGEALGTVRKMEYVRLSGKDRSYIKGQKYTLLSNRENLTLDGRKALKKLLTANKRL 65
Cdd:pfam01610  79 FDRFHVVKLANEALDEVRRREQKELKERLRKGLKGSRWLLLKNPENLTEEQKQRLDELLDLSPKL 143
COG3464 COG3464
Transposase [Mobilome: prophages, transposons];
1-76 3.45e-13

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442687 [Multi-domain]  Cd Length: 287  Bit Score: 62.56  E-value: 3.45e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1176785333   1 YDKFHVIRHLGEALGTVRKMEYVRL---SGKDRSYIKGQKYTLLSNRENLTLDGRKALKKLLTANKRLcvkGAIWTIVE 76
Cdd:COG3464   121 ADRFHVVKLLNEALDKVRRREQRELrgrRGRERRPLKRSRYLLLKNPENLTEKQKERLDELLSASPEL---KRAYELKE 196
transpos_ISL3 NF033550
ISL3 family transposase;
1-88 1.31e-12

ISL3 family transposase;


Pssm-ID: 468079 [Multi-domain]  Cd Length: 369  Bit Score: 61.06  E-value: 1.31e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176785333   1 YDKFHVIRHLGEALGTVRKMEYVRLSGKDRSY--IKGQKYTLLSNRENLTLDGRKALKKLLTANKRLC----VKGAIWTI 74
Cdd:NF033550  205 ADRFHVVKLANEALDKVRRREQKELRKRRRERktLKRYRWLLLKNPENLTEKQRERLEALLEASPELAkayeLKELLRDI 284

                          90
                  ....*....|....
gi 1176785333  75 VELSDRGMGKEVFR 88
Cdd:NF033550  285 WREKDPDEARELLE 298
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH