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Conserved domains on  [gi|1232315685|gb|OYV96747|]
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MAG: hypothetical protein B7Z73_00200 [Planctomycetia bacterium 21-64-5]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CxxCH_TIGR02603 super family cl28188
putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain ...
 509-637 8.11e-36

putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).


The actual alignment was detected with superfamily member TIGR02603:

Pssm-ID: 274224  Cd Length: 133  Bit Score: 131.33  E-value: 8.11e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 509 ADKSRGRAVFAKSCATCHRLFGTGGEIGPDLTGGNRKNLDYLLSNIVDPSAVVSKDHLMSVLLLSDGRVVNGIVMAETEE 588
Cdd:TIGR02603   1 GDAARGKAVFAKVCYLCHRIGGQGVDFGPNLTTVGTKGKEYLLEAILDPSRTVAPGFETYRVTTKDGRILAGLVASETAD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1232315685 589 AVTVQ-TAQARQVISRSEIEERSPSKLSLMPDGLLQPLQPADIADLFGYL 637
Cdd:TIGR02603  81 PLTIKmPGGVEQVVPREEIKKRKHLPVSLMPEGLEMGLSDQDLADLVAYL 130
Piru_Ver_Nterm super family cl26818
putative membrane-bound dehydrogenase domain; All proteins that score above the trusted cutoff ...
 2-51 5.00e-16

putative membrane-bound dehydrogenase domain; All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) (SP|Q44091) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.


The actual alignment was detected with superfamily member TIGR02604:

Pssm-ID: 274225 [Multi-domain]  Cd Length: 367  Bit Score: 80.18  E-value: 5.00e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1232315685   2 QSGDPWFRGVEVTYGPDGGVYLVDWSDTGECHENTG--VHRNSGRIYKVTYG 51
Cdd:TIGR02604 315 KSDDTWFRPVNVTTGPDGAIYVADWYDRGIEHHNDDlnDGSNSGRIYRITPK 366
HEAT COG1413
HEAT repeat [General function prediction only];
80-224 2.38e-05

HEAT repeat [General function prediction only];


:

Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 44.62  E-value: 2.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685  80 LVRAARRELTDRGARgddvqPAVEALNRLVVSDDAVVRLRAIWALTSL-AAMSRRQLMAMLDDPDEHVRTWGVRLLTDLw 158
Cdd:COG1413     1 VRRAAARALGRLGDP-----AAVPALIAALADEDPDVRAAAARALGRLgDPRAVPALLEALKDPDPEVRAAAAEALGRI- 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1232315685 159 pldtatglsraeavvPDEDVLDALVaRARDDASGLVRLALASTLARLPIALRPNLAAALLAHEEDA 224
Cdd:COG1413    75 ---------------GDPEAVPALI-AALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWE 124
T3SC_I-like super family cl38901
class I type III secretion system (T3SS) chaperones and similar proteins; This family contains ...
 196-296 2.72e-03

class I type III secretion system (T3SS) chaperones and similar proteins; This family contains class I type III secretion system (T3SS) chaperones mainly found in Gram-negative bacteria such as Pseudomonas, Yersinia, Salmonella, Escherichia and Erwinia, among others. A wide variety of these bacterial pathogens and symbionts require a T3SS to inject eukaryotic host cells with effector proteins important for suppressing host defenses and establishing infection. Many of these effector proteins interact with specific type III secretion chaperones prior to secretion. These T3SS chaperones have been classified as class I type III secretion chaperones (T3SC), which are small structurally conserved dimers that interact specifically with T3SS effector proteins. Class I T3SC consists of two subclasses: IA and IB. Class IA T3SC binds a single effector, whereas class IB T3SC binds to several effectors. Class IA and Class IB T3SCs typically exhibit little sequence similarities, but share a common overall heart-shaped structure fold (alpha-beta-beta-beta-alpha-beta-beta-alpha) and features, such as a small size, an acidic pI and an amphipathic C-terminal alpha-helix. Chaperone protein CesT serves a chaperone function for the enteropathogenic Escherichia coli (EPEC) translocated intimin receptor (Tir) protein, which confers upon EPEC the ability to alter host cell morphology following intimate bacterial attachment. In Pseudomonas aeruginosa, chaperone ExsC binds small secreted protein ExsE as well as the non-secreted anti-activator protein ExsD; it relieves repression of the transcriptional activator ExsA (which activates expression of T3SS genes) by ExsD. P. aeruginosa SpcU binds the cytotoxin ExoU, which is a broad-specificity phospholipase A2 (PLA2) and lysophospholipase, and maintains the N-terminus of ExoU in an unfolded state which is required for secretion. Salmonella enterica chaperone SicP forms a complex with effector protein SptP at an early stage of its secretion process in order to avoid premature degradation, while chaperone SigE binds to effector SigD, which, upon translocation into the host cell, preferentially dephosphorylates specific inositol phospholipids that are thought to be crucial for subsequent activation of the host cell Ser-Thr kinase Akt. This family also includes Yersinia chaperone/escortee pairs SycE/YopE, SycH/YopH, SycT/YopT and SycN+YscB/YopN, all of which bind to specific Yersinia outer proteins (Yops). Also included are several DspF and related sequences from several plant pathogenic bacteria. The "disease-specific" (dsp) region next to the hrp gene cluster of Erwinia amylovora is required for pathogenicity but not for elicitation of the hypersensitive reaction. In addition, a group of proteins including Escherichia coli YbjN, Erwinia amylovora AmyR, and their homologs, are included in this family. They share a class I T3SC-like fold with T3SS chaperone proteins but appear to function independently of the T3SS.


The actual alignment was detected with superfamily member cd17025:

Pssm-ID: 422950  Cd Length: 124  Bit Score: 38.42  E-value: 2.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 196 LALASTLARLPIALRPNLAAALLAheedaddHNLPALIWQTLIPLADRQPRQLIalavdarlpqfrLWTARRLAELagKQ 275
Cdd:cd17025    46 LTLSCLLGVPDERSDEELLLELLQ-------ANLFSLEHPPIIIGLDAEQDKLV------------LWTRQPLAEL--DE 104

                          90       100
                  ....*....|....*....|.
gi 1232315685 276 PELLaELFGRVVDNQYEVRRD 296
Cdd:cd17025   105 AELI-ELFERFVDKAEALKRW 124
 
Name Accession Description Interval E-value
CxxCH_TIGR02603 TIGR02603
putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain ...
 509-637 8.11e-36

putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).


Pssm-ID: 274224  Cd Length: 133  Bit Score: 131.33  E-value: 8.11e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 509 ADKSRGRAVFAKSCATCHRLFGTGGEIGPDLTGGNRKNLDYLLSNIVDPSAVVSKDHLMSVLLLSDGRVVNGIVMAETEE 588
Cdd:TIGR02603   1 GDAARGKAVFAKVCYLCHRIGGQGVDFGPNLTTVGTKGKEYLLEAILDPSRTVAPGFETYRVTTKDGRILAGLVASETAD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1232315685 589 AVTVQ-TAQARQVISRSEIEERSPSKLSLMPDGLLQPLQPADIADLFGYL 637
Cdd:TIGR02603  81 PLTIKmPGGVEQVVPREEIKKRKHLPVSLMPEGLEMGLSDQDLADLVAYL 130
Piru_Ver_Nterm TIGR02604
putative membrane-bound dehydrogenase domain; All proteins that score above the trusted cutoff ...
 2-51 5.00e-16

putative membrane-bound dehydrogenase domain; All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) (SP|Q44091) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.


Pssm-ID: 274225 [Multi-domain]  Cd Length: 367  Bit Score: 80.18  E-value: 5.00e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1232315685   2 QSGDPWFRGVEVTYGPDGGVYLVDWSDTGECHENTG--VHRNSGRIYKVTYG 51
Cdd:TIGR02604 315 KSDDTWFRPVNVTTGPDGAIYVADWYDRGIEHHNDDlnDGSNSGRIYRITPK 366
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 513-557 8.50e-06

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 44.45  E-value: 8.50e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1232315685 513 RGRAVFAKSCATCHRLFGTG-GEIGPDLTG-GNRKNLDYLLSNIVDP 557
Cdd:pfam00034   2 RGKKLFAANCAACHGVNGEGaGAGGPDLAGlAARYPGDALGAIRENK 48
HEAT COG1413
HEAT repeat [General function prediction only];
80-224 2.38e-05

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 44.62  E-value: 2.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685  80 LVRAARRELTDRGARgddvqPAVEALNRLVVSDDAVVRLRAIWALTSL-AAMSRRQLMAMLDDPDEHVRTWGVRLLTDLw 158
Cdd:COG1413     1 VRRAAARALGRLGDP-----AAVPALIAALADEDPDVRAAAARALGRLgDPRAVPALLEALKDPDPEVRAAAAEALGRI- 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1232315685 159 pldtatglsraeavvPDEDVLDALVaRARDDASGLVRLALASTLARLPIALRPNLAAALLAHEEDA 224
Cdd:COG1413    75 ---------------GDPEAVPALI-AALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWE 124
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 105-203 4.13e-05

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 42.32  E-value: 4.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 105 LNRLVVSDDAVVRLRAIWALTSLA-AMSRRQLMAMLDDPDEHVRTWGVRLLTDLwpldtatglsraeavvPDEDVLDALV 183
Cdd:pfam13646   5 LQALLRDPDPEVRAAAIRALGRIGdPEAVPALLELLKDEDPAVRRAAAEALGKI----------------GDPEALPALL 68

                          90       100
                  ....*....|....*....|
gi 1232315685 184 ARARDDASGLVRLALASTLA 203
Cdd:pfam13646  69 ELLRDDDDDVVRAAAAEALA 88
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
509-545 7.32e-05

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 42.18  E-value: 7.32e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1232315685 509 ADKSRGRAVFAKSCATCHRLFGTGGE-IGPDLTG-GNRK 545
Cdd:COG3474     1 GDAAAGEKLFNRKCAACHSVDGGAGNrVGPNLNGvVGRK 39
PRK13800 PRK13800
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
55-334 9.15e-05

fumarate reductase/succinate dehydrogenase flavoprotein subunit;


Pssm-ID: 237512 [Multi-domain]  Cd Length: 897  Bit Score: 45.61  E-value: 9.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685  55 AKPADDLTRVDIAELV-AIESGANEWLVRA-------ARRELTDRGARGDDVQPAVEALNRLVVSDDAVVRLRAIWALTS 126
Cdd:PRK13800  631 ADPDPGVRRTAVAVLTeTTPPGFGPALVAAlgdgaaaVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRA 710

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 127 LAAMSRRQLMAMLDDPDEHVRTWGVRLLTDLwpldtatglsraeavvpDEdvlDALVARARDDASGLVRLALASTLARLp 206
Cdd:PRK13800  711 LRAGDAALFAAALGDPDHRVRIEAVRALVSV-----------------DD---VESVAGAATDENREVRIAVAKGLATL- 769

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 207 ialrpnlaaallaheEDADDHNLPAliwqtlipladrqprqLIALAVDaRLPQFRLWTARRLAELaGKQPELLAELFGRV 286
Cdd:PRK13800  770 ---------------GAGGAPAGDA----------------VRALTGD-PDPLVRAAALAALAEL-GCPPDDVAAATAAL 816

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1232315685 287 VDNQYEVRRdvvlGAVVGLAGqrkASQPDRWPALLASFSPPPAEVQDA 334
Cdd:PRK13800  817 RASAWQVRQ----GAARALAG---AAADVAVPALVEALTDPHLDVRKA 857
T3SC_IA_ShcF-like cd17025
Class IA type III secretion system chaperone protein, similar to Pseudomonas syringae ShcF; ...
 196-296 2.72e-03

Class IA type III secretion system chaperone protein, similar to Pseudomonas syringae ShcF; This family includes type III secretion system (T3SS) chaperone proteins similar to Pseudomonas syringae ShcF and similar proteins. In P. syringae, which is a plant pathogen that can infect a wide range of species, the T3SS allows injection of the effector protein AvrPphF into genetically susceptible host cells. Chaperone ShcF (originally known as AvrPphF ORD1) binds AvrPphF in a similar manner to type III chaperones from bacterial pathogens of animals, indicating structural conservation of these specialized chaperones, despite high sequence divergence.


Pssm-ID: 409309  Cd Length: 124  Bit Score: 38.42  E-value: 2.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 196 LALASTLARLPIALRPNLAAALLAheedaddHNLPALIWQTLIPLADRQPRQLIalavdarlpqfrLWTARRLAELagKQ 275
Cdd:cd17025    46 LTLSCLLGVPDERSDEELLLELLQ-------ANLFSLEHPPIIIGLDAEQDKLV------------LWTRQPLAEL--DE 104

                          90       100
                  ....*....|....*....|.
gi 1232315685 276 PELLaELFGRVVDNQYEVRRD 296
Cdd:cd17025   105 AELI-ELFERFVDKAEALKRW 124
 
Name Accession Description Interval E-value
CxxCH_TIGR02603 TIGR02603
putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain ...
 509-637 8.11e-36

putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).


Pssm-ID: 274224  Cd Length: 133  Bit Score: 131.33  E-value: 8.11e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 509 ADKSRGRAVFAKSCATCHRLFGTGGEIGPDLTGGNRKNLDYLLSNIVDPSAVVSKDHLMSVLLLSDGRVVNGIVMAETEE 588
Cdd:TIGR02603   1 GDAARGKAVFAKVCYLCHRIGGQGVDFGPNLTTVGTKGKEYLLEAILDPSRTVAPGFETYRVTTKDGRILAGLVASETAD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1232315685 589 AVTVQ-TAQARQVISRSEIEERSPSKLSLMPDGLLQPLQPADIADLFGYL 637
Cdd:TIGR02603  81 PLTIKmPGGVEQVVPREEIKKRKHLPVSLMPEGLEMGLSDQDLADLVAYL 130
Piru_Ver_Nterm TIGR02604
putative membrane-bound dehydrogenase domain; All proteins that score above the trusted cutoff ...
 2-51 5.00e-16

putative membrane-bound dehydrogenase domain; All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) (SP|Q44091) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.


Pssm-ID: 274225 [Multi-domain]  Cd Length: 367  Bit Score: 80.18  E-value: 5.00e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1232315685   2 QSGDPWFRGVEVTYGPDGGVYLVDWSDTGECHENTG--VHRNSGRIYKVTYG 51
Cdd:TIGR02604 315 KSDDTWFRPVNVTTGPDGAIYVADWYDRGIEHHNDDlnDGSNSGRIYRITPK 366
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 513-557 8.50e-06

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 44.45  E-value: 8.50e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1232315685 513 RGRAVFAKSCATCHRLFGTG-GEIGPDLTG-GNRKNLDYLLSNIVDP 557
Cdd:pfam00034   2 RGKKLFAANCAACHGVNGEGaGAGGPDLAGlAARYPGDALGAIRENK 48
HEAT COG1413
HEAT repeat [General function prediction only];
80-224 2.38e-05

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 44.62  E-value: 2.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685  80 LVRAARRELTDRGARgddvqPAVEALNRLVVSDDAVVRLRAIWALTSL-AAMSRRQLMAMLDDPDEHVRTWGVRLLTDLw 158
Cdd:COG1413     1 VRRAAARALGRLGDP-----AAVPALIAALADEDPDVRAAAARALGRLgDPRAVPALLEALKDPDPEVRAAAAEALGRI- 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1232315685 159 pldtatglsraeavvPDEDVLDALVaRARDDASGLVRLALASTLARLPIALRPNLAAALLAHEEDA 224
Cdd:COG1413    75 ---------------GDPEAVPALI-AALKDEDPEVRRAAAEALGRLGDPAAVPALLEALKDPDWE 124
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 105-203 4.13e-05

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 42.32  E-value: 4.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 105 LNRLVVSDDAVVRLRAIWALTSLA-AMSRRQLMAMLDDPDEHVRTWGVRLLTDLwpldtatglsraeavvPDEDVLDALV 183
Cdd:pfam13646   5 LQALLRDPDPEVRAAAIRALGRIGdPEAVPALLELLKDEDPAVRRAAAEALGKI----------------GDPEALPALL 68

                          90       100
                  ....*....|....*....|
gi 1232315685 184 ARARDDASGLVRLALASTLA 203
Cdd:pfam13646  69 ELLRDDDDDVVRAAAAEALA 88
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
509-545 7.32e-05

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 42.18  E-value: 7.32e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1232315685 509 ADKSRGRAVFAKSCATCHRLFGTGGE-IGPDLTG-GNRK 545
Cdd:COG3474     1 GDAAAGEKLFNRKCAACHSVDGGAGNrVGPNLNGvVGRK 39
PRK13800 PRK13800
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
55-334 9.15e-05

fumarate reductase/succinate dehydrogenase flavoprotein subunit;


Pssm-ID: 237512 [Multi-domain]  Cd Length: 897  Bit Score: 45.61  E-value: 9.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685  55 AKPADDLTRVDIAELV-AIESGANEWLVRA-------ARRELTDRGARGDDVQPAVEALNRLVVSDDAVVRLRAIWALTS 126
Cdd:PRK13800  631 ADPDPGVRRTAVAVLTeTTPPGFGPALVAAlgdgaaaVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRA 710

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 127 LAAMSRRQLMAMLDDPDEHVRTWGVRLLTDLwpldtatglsraeavvpDEdvlDALVARARDDASGLVRLALASTLARLp 206
Cdd:PRK13800  711 LRAGDAALFAAALGDPDHRVRIEAVRALVSV-----------------DD---VESVAGAATDENREVRIAVAKGLATL- 769

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 207 ialrpnlaaallaheEDADDHNLPAliwqtlipladrqprqLIALAVDaRLPQFRLWTARRLAELaGKQPELLAELFGRV 286
Cdd:PRK13800  770 ---------------GAGGAPAGDA----------------VRALTGD-PDPLVRAAALAALAEL-GCPPDDVAAATAAL 816

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1232315685 287 VDNQYEVRRdvvlGAVVGLAGqrkASQPDRWPALLASFSPPPAEVQDA 334
Cdd:PRK13800  817 RASAWQVRQ----GAARALAG---AAADVAVPALVEALTDPHLDVRKA 857
HEAT COG1413
HEAT repeat [General function prediction only];
99-205 2.62e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 41.54  E-value: 2.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685  99 QPAVEALNRLVVSDDAVVRLRAIWALTSL-AAMSRRQLMAMLDDPDEHVRTWGVRLLTDLwpldtatglsraeavvPDED 177
Cdd:COG1413    46 PRAVPALLEALKDPDPEVRAAAAEALGRIgDPEAVPALIAALKDEDPEVRRAAAEALGRL----------------GDPA 109

                          90       100
                  ....*....|....*....|....*...
gi 1232315685 178 VLDALVARARDDaSGLVRLALASTLARL 205
Cdd:COG1413   110 AVPALLEALKDP-DWEVRRAAARALGRL 136
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
509-541 1.04e-03

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 37.77  E-value: 1.04e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1232315685 509 ADKSRGRAVFAKSCATCHrlfGTGGeIGPDLTG 541
Cdd:pfam13442   1 AAAAAGEALYAANCASCH---GTGG-AGPSLAG 29
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
500-548 1.95e-03

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 39.55  E-value: 1.95e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1232315685 500 QLSAARLSNADKSRGRAVFAKSCATCHRLFGTGGE-IGPDLTGGNRKNLD 548
Cdd:COG2010    78 AADAPAADAEALARGKALYEQNCAACHGADGKGGLgAAPNLTDDALYGGD 127
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 509-547 2.05e-03

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 40.22  E-value: 2.05e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1232315685 509 ADKSRGRAVFAKSCATCHRLFGTGGEIG------PDLTGGNRKNL 547
Cdd:COG3258   115 ADVERGKALYAERCASCHGADGEGQGRAdgqygfPPLWGGDSYND 159
T3SC_IA_ShcF-like cd17025
Class IA type III secretion system chaperone protein, similar to Pseudomonas syringae ShcF; ...
 196-296 2.72e-03

Class IA type III secretion system chaperone protein, similar to Pseudomonas syringae ShcF; This family includes type III secretion system (T3SS) chaperone proteins similar to Pseudomonas syringae ShcF and similar proteins. In P. syringae, which is a plant pathogen that can infect a wide range of species, the T3SS allows injection of the effector protein AvrPphF into genetically susceptible host cells. Chaperone ShcF (originally known as AvrPphF ORD1) binds AvrPphF in a similar manner to type III chaperones from bacterial pathogens of animals, indicating structural conservation of these specialized chaperones, despite high sequence divergence.


Pssm-ID: 409309  Cd Length: 124  Bit Score: 38.42  E-value: 2.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232315685 196 LALASTLARLPIALRPNLAAALLAheedaddHNLPALIWQTLIPLADRQPRQLIalavdarlpqfrLWTARRLAELagKQ 275
Cdd:cd17025    46 LTLSCLLGVPDERSDEELLLELLQ-------ANLFSLEHPPIIIGLDAEQDKLV------------LWTRQPLAEL--DE 104

                          90       100
                  ....*....|....*....|.
gi 1232315685 276 PELLaELFGRVVDNQYEVRRD 296
Cdd:cd17025   105 AELI-ELFERFVDKAEALKRW 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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