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Conserved domains on  [gi|1232315780|gb|OYV96830|]
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MAG: hypothetical protein B7Z73_00095 [Planctomycetia bacterium 21-64-5]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6290 super family cl46766
Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, ...
 1-39 7.90e-04

Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, they are predominantly found in bacteria but also in viruses. Proteins in this family are approximately 80 amino acids in length and presumably contain a ribbon-helix-helix DNA-binding motif.


The actual alignment was detected with superfamily member COG4710:

Pssm-ID: 481106  Cd Length: 76  Bit Score: 34.88  E-value: 7.90e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1232315780  1 MTITINLPPAAEEQLRAQAEATGKNISMLVVEAVEARLA 39
Cdd:COG4710    2 KMLSIRLPEELEARLDALAKRTGRSKSFYVREAIEEYLD 40
 
Name Accession Description Interval E-value
COG4710 COG4710
Predicted DNA-binding protein with an HTH domain [General function prediction only];
1-39 7.90e-04

Predicted DNA-binding protein with an HTH domain [General function prediction only];


Pssm-ID: 443745  Cd Length: 76  Bit Score: 34.88  E-value: 7.90e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1232315780  1 MTITINLPPAAEEQLRAQAEATGKNISMLVVEAVEARLA 39
Cdd:COG4710    2 KMLSIRLPEELEARLDALAKRTGRSKSFYVREAIEEYLD 40
 
Name Accession Description Interval E-value
COG4710 COG4710
Predicted DNA-binding protein with an HTH domain [General function prediction only];
1-39 7.90e-04

Predicted DNA-binding protein with an HTH domain [General function prediction only];


Pssm-ID: 443745  Cd Length: 76  Bit Score: 34.88  E-value: 7.90e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1232315780  1 MTITINLPPAAEEQLRAQAEATGKNISMLVVEAVEARLA 39
Cdd:COG4710    2 KMLSIRLPEELEARLDALAKRTGRSKSFYVREAIEEYLD 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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