NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1238240766|gb|PAM77321|]
View 

sporulation protein YdcC [Bacillus subtilis]

Protein Classification

outer membrane lipoprotein carrier protein LolA( domain architecture ID 10006693)

outer-membrane lipoprotein carrier protein LolA participates with LolB in the incorporation of lipoprotein into the outer membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
LolA COG2834
Outer membrane lipoprotein-sorting protein [Cell wall/membrane/envelope biogenesis];
20-207 1.40e-19

Outer membrane lipoprotein-sorting protein [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442082  Cd Length: 211  Bit Score: 85.52  E-value: 1.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238240766  20 ILSACGQKTQQDIVAGLDEKAKEYTSYKAKAKMTIET--GSEPQVYNVEIWHKKPSLYRVYLENPKKdqnQVILRNENGV 97
Cdd:COG2834    15 LALAGAAQSAEEILDKLQAKLNSIKSLSADFTQTVTDagGNEPQTSSGKFWLKRPGKFRWEYTKPYE---QLIVSDGKTV 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238240766  98 FVLTPSLNKSFRFQSDWPNNSSqvyLFESLVKDVQNDSDAVFTAKEKK---YVFETKTNyQHNKMLPTQEITFNKKDMsP 174
Cdd:COG2834    92 WIYDPDLNQVTVIPLSDATPLA---LLLGDFSDLLKDFTVTLLGEETGrkaYVLELTPK-DKDSGFGKITLWFDKETL-L 166
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1238240766 175 SSVKVMDTDRKVMVkVEFSSFEFNKQFDKESFD 207
Cdd:COG2834   167 RKLEIYDADGQRTT-ITFSNVKTNPPLPDSLFT 198
 
Name Accession Description Interval E-value
LolA COG2834
Outer membrane lipoprotein-sorting protein [Cell wall/membrane/envelope biogenesis];
20-207 1.40e-19

Outer membrane lipoprotein-sorting protein [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442082  Cd Length: 211  Bit Score: 85.52  E-value: 1.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238240766  20 ILSACGQKTQQDIVAGLDEKAKEYTSYKAKAKMTIET--GSEPQVYNVEIWHKKPSLYRVYLENPKKdqnQVILRNENGV 97
Cdd:COG2834    15 LALAGAAQSAEEILDKLQAKLNSIKSLSADFTQTVTDagGNEPQTSSGKFWLKRPGKFRWEYTKPYE---QLIVSDGKTV 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238240766  98 FVLTPSLNKSFRFQSDWPNNSSqvyLFESLVKDVQNDSDAVFTAKEKK---YVFETKTNyQHNKMLPTQEITFNKKDMsP 174
Cdd:COG2834    92 WIYDPDLNQVTVIPLSDATPLA---LLLGDFSDLLKDFTVTLLGEETGrkaYVLELTPK-DKDSGFGKITLWFDKETL-L 166
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1238240766 175 SSVKVMDTDRKVMVkVEFSSFEFNKQFDKESFD 207
Cdd:COG2834   167 RKLEIYDADGQRTT-ITFSNVKTNPPLPDSLFT 198
 
Name Accession Description Interval E-value
LolA COG2834
Outer membrane lipoprotein-sorting protein [Cell wall/membrane/envelope biogenesis];
20-207 1.40e-19

Outer membrane lipoprotein-sorting protein [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442082  Cd Length: 211  Bit Score: 85.52  E-value: 1.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238240766  20 ILSACGQKTQQDIVAGLDEKAKEYTSYKAKAKMTIET--GSEPQVYNVEIWHKKPSLYRVYLENPKKdqnQVILRNENGV 97
Cdd:COG2834    15 LALAGAAQSAEEILDKLQAKLNSIKSLSADFTQTVTDagGNEPQTSSGKFWLKRPGKFRWEYTKPYE---QLIVSDGKTV 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238240766  98 FVLTPSLNKSFRFQSDWPNNSSqvyLFESLVKDVQNDSDAVFTAKEKK---YVFETKTNyQHNKMLPTQEITFNKKDMsP 174
Cdd:COG2834    92 WIYDPDLNQVTVIPLSDATPLA---LLLGDFSDLLKDFTVTLLGEETGrkaYVLELTPK-DKDSGFGKITLWFDKETL-L 166
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1238240766 175 SSVKVMDTDRKVMVkVEFSSFEFNKQFDKESFD 207
Cdd:COG2834   167 RKLEIYDADGQRTT-ITFSNVKTNPPLPDSLFT 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH