|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
12-455 |
0e+00 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 585.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 12 FQSILDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFmfskqQDSTLVQALQEGKTIKNVkqsYFNNKG 91
Cdd:COG3829 13 LEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTELI-----PNSPLLEVLKTGKPVTGV---IQKTGG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 92 QEITTINHTYPIVQDGKIRGAVEIAKDVTKLERLIRE----NMNKKGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSV 167
Cdd:COG3829 85 KGKTVIVTAIPIFEDGEVIGAVETFRDITELKRLERKlreeELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 168 LLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTGAV--DQPGLFEQAHGGTLLLDEINS 245
Cdd:COG3829 165 LILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKkgGKPGLFELADGGTLFLDEIGE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 246 LNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLAS 325
Cdd:COG3829 245 MPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 326 EFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAMNFMTDEqTITASHLPYQYRMKIKPADIPEPETprh 405
Cdd:COG3829 325 HFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGD-VITPEHLPEYLLEEAEAASAAEEGS--- 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1238243458 406 qpaadLKEKMESFEKYVIENVLRKHGHNISKAAQELGISRQSLQYRLKKF 455
Cdd:COG3829 401 -----LKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKY 445
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
113-455 |
4.42e-130 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 382.77 E-value: 4.42e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 113 VEIAKDVTKLERLIRENMNKkgsttytfDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSG 192
Cdd:COG2204 111 LAAVERALERRRLRRENAED--------SGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRAD 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 193 GPFISQNCAALPDSLVESILFGTKKGAFTGAV-DQPGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKD 271
Cdd:COG2204 183 GPFVAVNCAAIPEELLESELFGHEKGAFTGAVaRRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKP 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 272 TPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVeHISDDVKQFFL 351
Cdd:COG2204 263 IPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPV-KLSPEALEALL 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 352 SYDWPGNIRELEHMIEGAMnFMTDEQTITASHLPyqyrmkikpadipepetprhqpaadlkEKMESFEKYVIENVLRKHG 431
Cdd:COG2204 342 AYDWPGNVRELENVIERAV-ILADGEVITAEDLP---------------------------EALEEVERELIERALEETG 393
|
330 340
....*....|....*....|....
gi 1238243458 432 HNISKAAQELGISRQSLQYRLKKF 455
Cdd:COG2204 394 GNVSRAAELLGISRRTLYRKLKKY 417
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
13-455 |
8.96e-116 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 353.05 E-value: 8.96e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 13 QSILDEIDVGLHVVDEHGNtIVY-NNKMMQIEDMEKHDVLNKNLMDVFmfsKQQDSTLVQALQEGktiknvkqsyfnnkG 91
Cdd:COG3284 219 PEFLGSLSEGLLAFDEDGR-IVAaNRAARRLLGLADAALLGRPLEELF---GLDLEALPDGARRA--------------P 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 92 QEITTINHtypivQDGKIRGAVEIAKDVTKLERlireNMNKKGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAG 171
Cdd:COG3284 281 ASPRPLRL-----RDGRRLGALLRLRPARRAAR----AAPAGAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILG 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 172 ETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTGAVDQ--PGLFEQAHGGTLLLDEINSLNLS 249
Cdd:COG3284 352 ETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKgrPGKIEQADGGTLFLDEIGDMPLA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 250 LQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERkEDILLLASEFIQ 329
Cdd:COG3284 432 LQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLR 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 330 KNNHlfQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAMNfMTDEQTITASHLPYQYRMkikPADIPEPETPrhQPAA 409
Cdd:COG3284 511 ELAA--GRGPLRLSPEALALLAAYPWPGNVRELRNVLRTALA-LADGGVITVEDLPDELRA---ELAAAAPAAA--APLT 582
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1238243458 410 DLKEKmesfEKYVIENVLRKHGHNISKAAQELGISRQSLqYR-LKKF 455
Cdd:COG3284 583 SLEEA----ERDAILRALRACGGNVSAAARALGISRSTL-YRkLKRY 624
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
143-454 |
4.63e-109 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 331.75 E-value: 4.63e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 143 ILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTG 222
Cdd:PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTG 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 223 AV-DQPGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGStkDTPI--DVRIIATMNEDPIDAIAGERMRKDL 299
Cdd:PRK05022 269 AIsNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGS--DRSLrvDVRVIAATNRDLREEVRAGRFRADL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 300 YYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMI---------EGAm 370
Cdd:PRK05022 347 YHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVIsraallaraRGA- 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 371 nfmTDEQTITASHLPYQyrmkiKPADIPEPET---PRHQPAADLKEKMESFEKYVIENVLRKHGHNISKAAQELGISRQS 447
Cdd:PRK05022 426 ---GRIVTLEAQHLDLP-----AEVALPPPEAaaaPAAVVSQNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRAN 497
|
....*..
gi 1238243458 448 LqYRLKK 454
Cdd:PRK05022 498 L-HRLAK 503
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
135-455 |
2.52e-101 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 310.24 E-value: 2.52e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 135 STTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFG 214
Cdd:PRK11361 137 STSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFG 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 215 TKKGAFTGAVDQ-PGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGE 293
Cdd:PRK11361 217 HEKGAFTGAQTLrQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEG 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 294 RMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAMnFM 373
Cdd:PRK11361 297 TFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAV-VM 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 374 TDEQTITASHLPYQYRMKIKPADIPEPETPRHQPaadLKEKMESFEKYVIENVLRKHGHNISKAAQELGISRQSLQYRLK 453
Cdd:PRK11361 376 NSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERN---LKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQ 452
|
..
gi 1238243458 454 KF 455
Cdd:PRK11361 453 EY 454
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
143-308 |
1.43e-97 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 290.07 E-value: 1.43e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 143 ILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTG 222
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 223 AV-DQPGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYY 301
Cdd:pfam00158 81 ADsDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 1238243458 302 RLSVVTL 308
Cdd:pfam00158 161 RLNVIPI 167
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
141-455 |
6.45e-96 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 298.94 E-value: 6.45e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 141 DSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAF 220
Cdd:TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAF 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 221 TGAVDQ-PGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDL 299
Cdd:TIGR01817 276 TGAIAQrKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADL 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 300 YYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVeHISDDVKQFFLSYDWPGNIRELEHMIEGAMNfMTDEQTI 379
Cdd:TIGR01817 356 YYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPL-TITPSAIRVLMSCKWPGNVRELENCLERTAT-LSRSGTI 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 380 TASHLPYQYR------------MKIKPADIPEPETPRHQPAAD--------LKEKMESFEKYVieNVLRKHGHNISKAAQ 439
Cdd:TIGR01817 434 TRSDFSCQSGqclspmlaktcpHGHISIDPLAGTTPPHSPASAalpgepglSGPTLSERERLI--AALEQAGWVQAKAAR 511
|
330
....*....|....*.
gi 1238243458 440 ELGISRQSLQYRLKKF 455
Cdd:TIGR01817 512 LLGMTPRQVGYALRKL 527
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
122-455 |
2.42e-87 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 273.93 E-value: 2.42e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 122 LERLIREN--MNKKGSTTyTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQN 199
Cdd:TIGR02915 119 LYTLETENrrLQSALGGT-ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAIN 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 200 CAALPDSLVESILFGTKKGAFTGAVDQ-PGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRI 278
Cdd:TIGR02915 198 CAAIPENLLESELFGYEKGAFTGAVKQtLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 279 IATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGN 358
Cdd:TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 359 IRELEHMIEGAMnFMTDEQTITASHLpyqyrmkikpaDIPEPETPRHQPAADLKEKMESFEKYVIENVLRKHGHNISKAA 438
Cdd:TIGR02915 358 VRELENKVKRAV-IMAEGNQITAEDL-----------GLDARERAETPLEVNLREVRERAEREAVRKAIARVDGNIARAA 425
|
330
....*....|....*..
gi 1238243458 439 QELGISRQSLQYRLKKF 455
Cdd:TIGR02915 426 ELLGITRPTLYDLMKKH 442
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
139-444 |
3.04e-87 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 275.91 E-value: 3.04e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 139 TFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKG 218
Cdd:COG3283 202 GFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPG 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 219 AFTGA-VDQPGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRK 297
Cdd:COG3283 282 AFGNArEGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFRE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 298 DLYYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAMNfMTDEQ 377
Cdd:COG3283 362 DLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVS-LLEGD 440
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1238243458 378 TITASHLpyqyrmkikpaDIPEPETprHQPAAD------LKEKMESFEKyvieNVLRK-HGHNIS--KAAQELGIS 444
Cdd:COG3283 441 ELTPEDL-----------QLPEYAA--SAGLLDdllegsLDEIVKRFER----SLLRRlYPSYPStrKLAKRLGVS 499
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
143-454 |
7.12e-82 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 259.96 E-value: 7.12e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 143 ILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTG 222
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 223 A-VDQPGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYY 301
Cdd:PRK10365 221 AdKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 302 RLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAMNFMTDEQtITA 381
Cdd:PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEY-ISE 379
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1238243458 382 SHLPyqyrMKIKPADIPEPETPRHQPAADLkekmesfEKYVIENVLRKHGHNISKAAQELGISRQSLQYRLKK 454
Cdd:PRK10365 380 RELP----LAIASTPIPLGQSQDIQPLVEV-------EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
143-454 |
2.23e-81 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 254.53 E-value: 2.23e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 143 ILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTG 222
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 223 AVDQ-PGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYY 301
Cdd:TIGR02974 81 AQKRhQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 302 RLS--VVTLiiPPLRERKEDILLLASEF-IQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAMNFMTDEQT 378
Cdd:TIGR02974 161 RLAfdVITL--PPLRERQEDIMLLAEHFaIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEEA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 379 ------ITASHLPYQYRMKI--------KPADIPEPETPRHQPAADLKEKMESFEKYVIENVLRKHGHNISKAAQELGIS 444
Cdd:TIGR02974 239 pideiiIDPFASPWRPKQAApavdevnsTPTDLPSPSSIAAAFPLDLKQAQQDYEIELLQQALAEAQFNQRKAAELLGLT 318
|
330
....*....|
gi 1238243458 445 RQSLQYRLKK 454
Cdd:TIGR02974 319 YHQLRGLLRK 328
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
109-454 |
5.18e-81 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 260.42 E-value: 5.18e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 109 IRGAVEIAKDVTKLERL--IRENMNKKGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHN 186
Cdd:PRK15424 185 VRQAFEDALDMTRMTLRhnTHYATRNALRTRYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHR 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 187 G--------SDRSGGPFISQNCAALPDSLVESILFGTKKGAFTGAV--DQPGLFEQAHGGTLLLDEINSLNLSLQAKLLR 256
Cdd:PRK15424 265 EyfarhdarQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRrgGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 257 ALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQknNHLFQ 336
Cdd:PRK15424 345 VLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK--QSLAA 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 337 MNVEhISDDVKQ-------FFLSYDWPGNIRELEHMIEGamnfmtdeqtiTASHLPYQYRMKIKPADIPE--PEtpRHQP 407
Cdd:PRK15424 423 LSAP-FSAALRQglqqcetLLLHYDWPGNVRELRNLMER-----------LALFLSVEPTPDLTPQFLQLllPE--LARE 488
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1238243458 408 AADLKEKMESFEKyvIENVLRKHGHNISKAAQELGISRQSLQYRLKK 454
Cdd:PRK15424 489 SAKTPAPRLLAAT--LQQALERFNGDKTAAANYLGISRTTLWRRLKA 533
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
109-454 |
7.62e-81 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 259.79 E-value: 7.62e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 109 IRGAVEIAKDVTKLERL-----IRENMNKKGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQS 183
Cdd:TIGR02329 175 VRQAFDDALDVARATRLrqaatLRSATRNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQA 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 184 IHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTGAVD--QPGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQER 261
Cdd:TIGR02329 255 IHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRggRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEER 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 262 KIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEH 341
Cdd:TIGR02329 335 EVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 342 IS----DDVKQFFLSYDWPGNIRELEHMIEGamnfMTDEQTITASHLPYQYRMKIKPADIPEPETPRHQPAADLKEKmES 417
Cdd:TIGR02329 415 AAaqvlAGVADPLQRYPWPGNVRELRNLVER----LALELSAMPAGALTPDVLRALAPELAEASGKGKTSALSLRER-SR 489
|
330 340 350
....*....|....*....|....*....|....*..
gi 1238243458 418 FEKYVIENVLRKHGHNISKAAQELGISRQSLQYRLKK 454
Cdd:TIGR02329 490 VEALAVRAALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
166-455 |
3.68e-79 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 249.38 E-value: 3.68e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 166 SVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESilfgtkkgaftgavdqpglfeqahggtllldeins 245
Cdd:COG3604 117 AVAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES----------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 246 lnlslqakllraLQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLAS 325
Cdd:COG3604 162 ------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAE 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 326 EFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAMnFMTDEQTITASHLpyqyrmkikpadipepetprh 405
Cdd:COG3604 230 HFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAV-ILAEGGVLDADDL--------------------- 287
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1238243458 406 qpAADLKEKMESFEKYVIENVLRKHGHNISKAAQELGISRQSLQYRLKKF 455
Cdd:COG3604 288 --APGSREALEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKL 335
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
143-453 |
1.47e-75 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 243.88 E-value: 1.47e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 143 ILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTG 222
Cdd:TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 223 AVDQ-PGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYY 301
Cdd:TIGR01818 216 ANTRrQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 302 RLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEgAMNFMTDEQTITA 381
Cdd:TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCR-WLTVMASGDEVLV 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 382 SHLPYQYRMKIKPADIPEPETP----------------RHQPAAdLKEKMESFEKYVIENVLR-KHGHNIsKAAQELGIS 444
Cdd:TIGR01818 375 SDLPAELALTGRPASAPDSDGQdswdealeawakqalsRGEQGL-LDRALPEFERPLLEAALQhTRGHKQ-EAAALLGWG 452
|
....*....
gi 1238243458 445 RQSLQYRLK 453
Cdd:TIGR01818 453 RNTLTRKLK 461
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
141-367 |
3.52e-74 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 239.74 E-value: 3.52e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 141 DSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAF 220
Cdd:PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAF 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 221 TGAVDQ-PGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDL 299
Cdd:PRK15115 214 TGAVSNrEGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDL 293
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1238243458 300 YYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIE 367
Cdd:PRK15115 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
15-455 |
6.92e-70 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 233.80 E-value: 6.92e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 15 ILDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFMFSkqqdSTLVQALQEGKTIKNVkQSYFNNKGQEI 94
Cdd:PRK11388 208 LLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRAITELLTLP----AVLQQAIKQAHPLKHV-EVTFESQGQFI 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 95 TTINHTYPIVqDGKIRGAVEIAKDVTKLERLIRENMnkkGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETG 174
Cdd:PRK11388 283 DAVITLKPII-EGQGTSFILLLHPVEQMRQLMTSQL---GKVSHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEG 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 175 TGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAftGAVDQPGLFEQAHGGTLLLDEINSLNLSLQAKL 254
Cdd:PRK11388 359 VGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTD--SENGRLSKFELAHGGTLFLEKVEYLSPELQSAL 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 255 LRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHL 334
Cdd:PRK11388 437 LQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKR 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 335 FQMNVEhISDDVKQFFLSYDWPGNIRELEHMIEGAMNFmtdeqtitaSHlpyqyRMKIKPADIPE---PETPRHQPAADL 411
Cdd:PRK11388 517 FSTRLK-IDDDALARLVSYRWPGNDFELRSVIENLALS---------SD-----NGRIRLSDLPEhlfTEQATDDVSATR 581
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1238243458 412 KEKMESF---EKYVIENVLRKHGHNISKAAQELGISRQSLQYRLKKF 455
Cdd:PRK11388 582 LSTSLSLaelEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQH 628
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
123-454 |
1.16e-68 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 231.26 E-value: 1.16e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 123 ERLIRENM---NKKGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQN 199
Cdd:PRK15429 355 ERLVDENLaltEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 200 CAALPDSLVESILFGTKKGAFTGAVDQP-GLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRI 278
Cdd:PRK15429 435 CAAMPAGLLESDLFGHERGAFTGASAQRiGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRL 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 279 IATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGN 358
Cdd:PRK15429 515 IAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGN 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 359 IRELEHMIEGAMnFMTDEQTITAShLPyqyrmkikPADIPEPETPrhqPAADLKEKMESFEKYVIENVLRKHGHNIS--- 435
Cdd:PRK15429 595 VRELENVIERAV-LLTRGNVLQLS-LP--------DITLPEPETP---PAATVVAQEGEDEYQLIVRVLKETNGVVAgpk 661
|
330
....*....|....*....
gi 1238243458 436 KAAQELGISRQSLQYRLKK 454
Cdd:PRK15429 662 GAAQRLGLKRTTLLSRMKR 680
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
26-459 |
2.69e-66 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 221.48 E-value: 2.69e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 26 VDEHGNTIVYNNKMMQIEDMEKHDVLNKN---LMDVFMFSKQQDSTLVQALQEGKTIKNvkQSYFnnkgQEITTI----- 97
Cdd:PRK10820 96 IDMKGKVELANPASCQLFGQSEEKLRNHTaaqLINGFNFLRWLESEPQDSHNEHVVING--QDFL----MEITPVylqde 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 98 NHTYPIVqdgkirGAVEIAKDVTkleRLIRENMNKKGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGK 177
Cdd:PRK10820 170 NDQHVLV------GAVVMLRSTA---RMGRQLQNLAVNDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGK 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 178 ELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTGAVD-QPGLFEQAHGGTLLLDEINSLNLSLQAKLLR 256
Cdd:PRK10820 241 DLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEgKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 257 ALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQKnnhlF- 335
Cdd:PRK10820 321 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVAR----Fa 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 336 -QMNVEH--ISDDVKQFFLSYDWPGNIRELEHMIEGAMNFMTDeqtitashlpyqyrMKIKPADIPEPEtprHQPAADLK 412
Cdd:PRK10820 397 dEQGVPRpkLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEG--------------YELRPQDILLPD---YDAAVAVG 459
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1238243458 413 EK-MES--------FEKYVIENVLRkHGHNISKAAQELGISRQSLQYRLKKFSHSS 459
Cdd:PRK10820 460 EDaMEGsldeitsrFERSVLTRLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLSQ 514
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
141-454 |
1.81e-65 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 213.38 E-value: 1.81e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 141 DSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAF 220
Cdd:PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 221 TGAVDQ-PGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDL 299
Cdd:PRK11608 86 TGAQKRhPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 300 YYRLSVVTLIIPPLRERKEDILLLASEF-IQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAM-NFMTDEQ 377
Cdd:PRK11608 166 LDRLAFDVVQLPPLRERQSDIMLMAEHFaIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVyRHGTSEY 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 378 TITASHL-PYQYRmkiKPADIPEPETPRHQPA--ADLKEKMESFEKYVIENVLRKHGHNISKAAQELGISRQSLQYRLKK 454
Cdd:PRK11608 246 PLDNIIIdPFKRR---PAEEAIAVSETTSLPTlpLDLREWQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKK 322
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
114-454 |
1.32e-63 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 212.81 E-value: 1.32e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 114 EIAKDVTKLERLIRENMNKKGSTTYTFDS----ILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSD 189
Cdd:PRK10923 107 DIDEAVALVERAISHYQEQQQPRNIQVNGpttdIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSP 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 190 RSGGPFISQNCAALPDSLVESILFGTKKGAFTGA--VDQpGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIG 267
Cdd:PRK10923 187 RAKAPFIALNMAAIPKDLIESELFGHEKGAFTGAntIRQ-GRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVG 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 268 STKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVK 347
Cdd:PRK10923 266 GYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 348 QFFLSYDWPGNIRELEHMIEGaMNFMTDEQTITASHLPYQYRMKIKPaDIPEPETPRHQPA-----AD----------LK 412
Cdd:PRK10923 346 AALTRLAWPGNVRQLENTCRW-LTVMAAGQEVLIQDLPGELFESTVP-ESTSQMQPDSWATllaqwADralrsghqnlLS 423
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1238243458 413 EKMESFEKYVIENVLR-KHGHNiSKAAQELGISRQSLQYRLKK 454
Cdd:PRK10923 424 EAQPELERTLLTTALRhTQGHK-QEAARLLGWGRNTLTRKLKE 465
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
160-362 |
2.04e-35 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 137.66 E-value: 2.04e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 160 ATRTSSSVLLAGETGTGKELFAQSI-------HngsdRSGGPFISQNCAALPDSLVESILFGTKKGAFTGAV-DQPGLFE 231
Cdd:COG4650 204 AIRSRAPILLTGPTGAGKSQLARRIyelkkarH----QVSGRFVEVNCATLRGDGAMSALFGHVKGAFTGAVsDRAGLLR 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 232 QAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIP 311
Cdd:COG4650 280 SADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLP 359
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1238243458 312 PLRERKEDI-----LLLAsEFIQKNNHLFQMNVEhisddVKQFFLSYD------WPGNIREL 362
Cdd:COG4650 360 GLAERREDIepnldYELA-RFAREQGRRVRFNKE-----ARARYLAFAtspealWSGNFRDL 415
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
117-392 |
3.03e-30 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 124.45 E-value: 3.03e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 117 KDVTKLERLIRENMNKKGSTTyTFDSILGTSPAIQDVIENAKRA---------TrtsssvLLAGETGTGKELFAQSIH-- 185
Cdd:COG1221 81 KSEYSFVELLAEKENNEEEED-PFDNLIGANGSLKNAIEQAKAAilyppkglhT------LILGPTGVGKSFFAELMYey 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 186 ---NGSDRSGGPFISQNCAalpD-----SLVESILFGTKKGAFTGAV-DQPGLFEQAHGGTLLLDEINSLNLSLQAKLLR 256
Cdd:COG1221 154 aieIGVLPEDAPFVVFNCA---DyannpQLLMSQLFGYVKGAFTGADkDKEGLIEKADGGILFLDEVHRLPPEGQEMLFT 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 257 ALQERKIRRIGSTKDT-PIDVRIIATMNEDPIDAIAGERMRkdlyyRLSVVtlI-IPPLRER--KEDILLLASEFIQKNN 332
Cdd:COG1221 231 FMDKGIYRRLGETEKTrKANVRIIFATTEDPESSLLKTFLR-----RIPMV--IkLPSLEERslEERLELIKHFFKEEAK 303
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1238243458 333 HLfQMNVeHISDDVKQFFLSYDWPGNIRELEHMI-----EGAMNFMTDEQ---TITASHLPYQYRMKI 392
Cdd:COG1221 304 RL-NKPI-KVSKEVLKALLLYDCPGNIGQLKSDIqlacaKAFLNYITNKKeeiEITLSDLPENVKKGL 369
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
149-306 |
1.91e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 84.89 E-value: 1.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 149 AIQDVIENAKRATRtsSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGtkkgaFTGAVDQPG 228
Cdd:cd00009 6 AIEALREALELPPP--KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG-----HFLVRLLFE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1238243458 229 LFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGstkdtPIDVRIIATMNEDPIDaiageRMRKDLYYRLSVV 306
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID-----RENVRVIGATNRPLLG-----DLDRALYDRLDIR 146
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
144-313 |
2.18e-19 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 84.32 E-value: 2.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 144 LGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSlvesilfgtkkgaftga 223
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLE----------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 224 vdqpgLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKirrigstkdtPIDVRIIATMNEDPIDAIAGERMRKDLYYRL 303
Cdd:pfam14532 64 -----LLEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFEL 128
|
170
....*....|
gi 1238243458 304 SVVTLIIPPL 313
Cdd:pfam14532 129 SALRLHVPPL 138
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
415-454 |
2.26e-12 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 61.26 E-value: 2.26e-12
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1238243458 415 MESFEKYVIENVLRKHGHNISKAAQELGISRQSLQYRLKK 454
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
163-303 |
2.46e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 64.32 E-value: 2.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 163 TSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVES---ILFGTKKGAFTGAVDQPGLFEQAHG---G 236
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLRLALALARKlkpD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1238243458 237 TLLLDEINSLNLSLQAKLLRALQErkiRRIGSTKDTPIDVRIIATMN--EDPIDAIAGERMRKDLYYRL 303
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
166-303 |
1.56e-08 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 53.07 E-value: 1.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 166 SVLLAGETGTGK----ELFAQSIHNGSdrsggPFISQNCAAL-PDSLVESILFGTKKGAFtgaVDQPGLFEQAHGGTLLL 240
Cdd:pfam07728 1 GVLLVGPPGTGKtelaERLAAALSNRP-----VFYVQLTRDTtEEDLFGRRNIDPGGASW---VDGPLVRAAREGEIAVL 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1238243458 241 DEINSLNLSLQAKLLRALQERKIRRIGSTKDT---PIDVRIIATMNEDPIDaiaGERMRKDLYYRL 303
Cdd:pfam07728 73 DEINRANPDVLNSLLSLLDERRLLLPDGGELVkaaPDGFRLIATMNPLDRG---LNELSPALRSRF 135
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
12-128 |
9.68e-07 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 50.62 E-value: 9.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 12 FQSILDEIDVGLHVVDEHGnTIVY-NNKMMQIEDMEKHDVLNKNLMDVFMFSKQQDSTLVQALQEGKTIKNVKQSYFNNK 90
Cdd:COG3852 9 LRAILDSLPDAVIVLDADG-RITYvNPAAERLLGLSAEELLGRPLAELFPEDSPLRELLERALAEGQPVTEREVTLRRKD 87
|
90 100 110
....*....|....*....|....*....|....*...
gi 1238243458 91 GQEITTINHTYPIVQDGKIRGAVEIAKDVTKLERLIRE 128
Cdd:COG3852 88 GEERPVDVSVSPLRDAEGEGGVLLVLRDITERKRLERE 125
|
|
| PRK11360 |
PRK11360 |
two-component system sensor histidine kinase AtoS; |
15-132 |
1.85e-06 |
|
two-component system sensor histidine kinase AtoS;
Pssm-ID: 236901 [Multi-domain] Cd Length: 607 Bit Score: 50.35 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 15 ILDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFMFSKQQDSTLVQALQEGKTIKNVKQSyFNNKGQEI 94
Cdd:PRK11360 267 ILESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYSELFPPNTPFASPLLDTLEHGTEHVDLEIS-FPGRDRTI 345
|
90 100 110
....*....|....*....|....*....|....*....
gi 1238243458 95 TTINHTYPIVQ-DGKIRGAVEIAKDVTKLERLiRENMNK 132
Cdd:PRK11360 346 ELSVSTSLLHNtHGEMIGALVIFSDLTERKRL-QRRVAR 383
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
415-455 |
7.94e-06 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 44.03 E-value: 7.94e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1238243458 415 MESFEKYVIENVLRKHGHNISKAAQELGISRQSLQYRLKKF 455
Cdd:COG2901 40 LAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQY 80
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
167-288 |
7.96e-06 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 47.47 E-value: 7.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 167 VLLAGETGTGKELFAQSIhngSDRSGGPFISQNCAalPDSLVESIL----FGTKKGAFtgaVDQPG-LFEQahggTLLLD 241
Cdd:COG0714 34 LLLEGVPGVGKTTLAKAL---ARALGLPFIRIQFT--PDLLPSDILgtyiYDQQTGEF---EFRPGpLFAN----VLLAD 101
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1238243458 242 EINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNedPID 288
Cdd:COG0714 102 EINRAPPKTQSALLEAMEERQVTIPGGTYKLPEPFLVIATQN--PIE 146
|
|
| CdaR |
COG3835 |
Sugar diacid utilization regulator CdaR [Transcription, Signal transduction mechanisms]; |
304-454 |
3.44e-05 |
|
Sugar diacid utilization regulator CdaR [Transcription, Signal transduction mechanisms];
Pssm-ID: 443046 [Multi-domain] Cd Length: 301 Bit Score: 45.41 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 304 SVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVeHIS-----DDVKQFFLSYdwpgniRELEHMIEGAMNFMTDEQT 378
Cdd:COG3835 125 RLVVLLPAESEWRDEELRELAERLLEELEREGGLRV-RIGvgrpvPGLAGLARSY------REARRALELGRRLGPEGRV 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 379 ITASHLPYqYRMKIKPADIPEPETPRHQPAADLKEK-------MESFEKYVienvlrKHGHNISKAAQELGISRQSLQYR 451
Cdd:COG3835 198 YFYDDLGL-ERLLLQLRDDDELAEFLEEVLGPLLEYdkhggelLETLRAYF------ENNGNISETAEALFIHRNTLRYR 270
|
...
gi 1238243458 452 LKK 454
Cdd:COG3835 271 LKK 273
|
|
| COG4567 |
COG4567 |
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ... |
423-456 |
4.67e-05 |
|
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains [Signal transduction mechanisms, Transcription];
Pssm-ID: 443624 [Multi-domain] Cd Length: 177 Bit Score: 43.75 E-value: 4.67e-05
10 20 30
....*....|....*....|....*....|....
gi 1238243458 423 IENVLRKHGHNISKAAQELGISRQSLQYRLKKFS 456
Cdd:COG4567 141 IQRVLAECDGNISATARALGMHRRTLQRKLAKRP 174
|
|
| PAS_9 |
pfam13426 |
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor ... |
29-121 |
2.16e-04 |
|
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor domain. It recognizes FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463873 [Multi-domain] Cd Length: 93 Bit Score: 40.14 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 29 HGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFmFSKQQDSTLVQALQEGKTIKNVKQSYFNNKGQEITTINHTYPIV-QDG 107
Cdd:pfam13426 1 DGRIIYVNDAALRLLGYTREELLGKSITDLF-AEPEDSERLREALREGKAVREFEVVLYRKDGEPFPVLVSLAPIRdDGG 79
|
90
....*....|....
gi 1238243458 108 KIRGAVEIAKDVTK 121
Cdd:pfam13426 80 ELVGIIAILRDITE 93
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
12-59 |
2.54e-04 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 39.30 E-value: 2.54e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1238243458 12 FQSILDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVF 59
Cdd:smart00091 3 LRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELI 50
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
12-128 |
7.20e-04 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 41.16 E-value: 7.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 12 FQSILDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFMFSKQQD--STLVQALQEGKTIKNVKQSYFNN 89
Cdd:COG2202 139 LRLLVENAPDGIFVLDLDGRILYVNPAAEELLGYSPEELLGKSLLDLLHPEDRERllELLRRLLEGGRESYELELRLKDG 218
|
90 100 110
....*....|....*....|....*....|....*....
gi 1238243458 90 KGQEITTINHTYPIVQDGKIRGAVEIAKDVTKLERLIRE 128
Cdd:COG2202 219 DGRWVWVEASAVPLRDGGEVIGVLGIVRDITERKRAEEA 257
|
|
| AAA_3 |
pfam07726 |
ATPase family associated with various cellular activities (AAA); This Pfam entry includes some ... |
167-288 |
1.71e-03 |
|
ATPase family associated with various cellular activities (AAA); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 429622 [Multi-domain] Cd Length: 131 Bit Score: 38.31 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 167 VLLAGETGTGKELFAQSIhngSDRSGGPF--ISQNCAALPDSLVESILFGTKKGAFtgaVDQPG-LFEQahggTLLLDEI 243
Cdd:pfam07726 2 VLLEGVPGLAKTLLVRTL---ARSLGLDFrrIQFTPDLLPSDITGTEVFDQKTREF---EFRPGpVFAN----VLLADEI 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1238243458 244 NSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNedPID 288
Cdd:pfam07726 72 NRAPPKTQSALLEAMQERQVTIDGETHPLPEPFFVLATQN--PIE 114
|
|
| PAS_4 |
pfam08448 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
16-124 |
5.33e-03 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain is associated to signalling systems and works as a signal sensor domain. It recognizes differently substituted aromatic hydrocarbons, oxygen, different dodecanoic acids, autoinducers, 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 312075 [Multi-domain] Cd Length: 110 Bit Score: 36.62 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 16 LDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFMFSKQQD--STLVQALQEGKTIKNVKQSYFNnkGQE 93
Cdd:pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAARleRALRRALEGEEPIDFLEELLLN--GEE 78
|
90 100 110
....*....|....*....|....*....|..
gi 1238243458 94 ITTINHTYPIVQ-DGKIRGAVEIAKDVTKLER 124
Cdd:pfam08448 79 RHYELRLTPLRDpDGEVIGVLVISRDITERRR 110
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
12-128 |
6.84e-03 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 38.08 E-value: 6.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238243458 12 FQSILDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFmfSKQQDSTLVQALQEGKTIKNVKQSYFNNK- 90
Cdd:COG2202 13 LRALVESSPDAIIITDLDGRILYVNPAFERLTGYSAEELLGKTLRDLL--PPEDDDEFLELLRAALAGGGVWRGELRNRr 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1238243458 91 --GQEITTINHTYPIV-QDGKIRGAVEIAKDVT---KLERLIRE 128
Cdd:COG2202 91 kdGSLFWVELSISPVRdEDGEITGFVGIARDITerkRAEEALRE 134
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