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Conserved domains on  [gi|1274999067|gb|PIK45928|]
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paired superclass homeobox transcription factor HpPitx [Apostichopus japonicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain super family cl47488
Homeodomain;
8-20 8.18e-05

Homeodomain;


The actual alignment was detected with superfamily member pfam00046:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 39.02  E-value: 8.18e-05
                          10
                  ....*....|...
gi 1274999067   8 KIWFKNRRAKWRK 20
Cdd:pfam00046  45 KVWFQNRRAKWKR 57
OAR pfam03826
OAR motif; The entry represents the OAR motif.
 146-159 9.21e-03

OAR motif; The entry represents the OAR motif.


:

Pssm-ID: 461067  Cd Length: 19  Bit Score: 32.38  E-value: 9.21e-03
                          10
                  ....*....|....
gi 1274999067 146 SLASLRLKAKHHSE 159
Cdd:pfam03826   6 SIASLRLKAKEHSA 19
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
8-20 8.18e-05

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 39.02  E-value: 8.18e-05
                          10
                  ....*....|...
gi 1274999067   8 KIWFKNRRAKWRK 20
Cdd:pfam00046  45 KVWFQNRRAKWKR 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 8-22 4.49e-04

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 36.84  E-value: 4.49e-04
                          10
                  ....*....|....*
gi 1274999067   8 KIWFKNRRAKWRKRE 22
Cdd:cd00086    45 KIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 8-19 2.43e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 34.92  E-value: 2.43e-03
                           10
                   ....*....|..
gi 1274999067    8 KIWFKNRRAKWR 19
Cdd:smart00389  46 KVWFQNRRAKWK 57
OAR pfam03826
OAR motif; The entry represents the OAR motif.
 146-159 9.21e-03

OAR motif; The entry represents the OAR motif.


Pssm-ID: 461067  Cd Length: 19  Bit Score: 32.38  E-value: 9.21e-03
                          10
                  ....*....|....
gi 1274999067 146 SLASLRLKAKHHSE 159
Cdd:pfam03826   6 SIASLRLKAKEHSA 19
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
8-20 8.18e-05

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 39.02  E-value: 8.18e-05
                          10
                  ....*....|...
gi 1274999067   8 KIWFKNRRAKWRK 20
Cdd:pfam00046  45 KVWFQNRRAKWKR 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 8-22 4.49e-04

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 36.84  E-value: 4.49e-04
                          10
                  ....*....|....*
gi 1274999067   8 KIWFKNRRAKWRKRE 22
Cdd:cd00086    45 KIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 8-19 2.43e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 34.92  E-value: 2.43e-03
                           10
                   ....*....|..
gi 1274999067    8 KIWFKNRRAKWR 19
Cdd:smart00389  46 KVWFQNRRAKWK 57
OAR pfam03826
OAR motif; The entry represents the OAR motif.
 146-159 9.21e-03

OAR motif; The entry represents the OAR motif.


Pssm-ID: 461067  Cd Length: 19  Bit Score: 32.38  E-value: 9.21e-03
                          10
                  ....*....|....
gi 1274999067 146 SLASLRLKAKHHSE 159
Cdd:pfam03826   6 SIASLRLKAKEHSA 19
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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