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Conserved domains on  [gi|1276885480|gb|PIP08469|]
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hypothetical protein COX52_00095 [Syntrophobacterales bacterium CG23_combo_of_CG06-09_8_20_14_all_48_27]

Protein Classification

LytTR family DNA-binding domain-containing protein( domain architecture ID 499)

LytTR family DNA-binding domain-containing protein may function as a response regulator transcription factor

CATH:  2.40.50.1020
Gene Ontology:  GO:0003677
PubMed:  16740923|12034833
SCOP:  4004734

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LytTR super family cl04498
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 30-86 8.33e-07

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


The actual alignment was detected with superfamily member pfam04397:

Pssm-ID: 446404 [Multi-domain]  Cd Length: 98  Bit Score: 47.20  E-value: 8.33e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1276885480  30 KDTVYLCGEGGKTYAVLEGGKRlEVSQNLNFYETEFPGF-FLRVHRSFLVAVGRIEGV 86
Cdd:pfam04397   9 DDILYIEAEDKYVTIHTANGEY-LTRGTLKELEEKLPPDgFFRCHRSYLVNLNKIKEI 65
 
Name Accession Description Interval E-value
LytTR pfam04397
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 30-86 8.33e-07

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 427920 [Multi-domain]  Cd Length: 98  Bit Score: 47.20  E-value: 8.33e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1276885480  30 KDTVYLCGEGGKTYAVLEGGKRlEVSQNLNFYETEFPGF-FLRVHRSFLVAVGRIEGV 86
Cdd:pfam04397   9 DDILYIEAEDKYVTIHTANGEY-LTRGTLKELEEKLPPDgFFRCHRSYLVNLNKIKEI 65
LytTR smart00850
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 30-86 5.12e-06

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 197918 [Multi-domain]  Cd Length: 96  Bit Score: 44.87  E-value: 5.12e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1276885480   30 KDTVYLCGEGGKTYAVLEGGKrLEVSQNLNFYETEFPGF-FLRVHRSFLVAVGRIEGV 86
Cdd:smart00850   9 DDILYIEAEGNYVTVHTKDGT-YLVRGTLKELEERLDPDnFFRIHRSYIVNLDHIKEI 65
LytT COG3279
DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction ...
 30-86 1.20e-05

DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction mechanisms];


Pssm-ID: 442510 [Multi-domain]  Cd Length: 235  Bit Score: 46.73  E-value: 1.20e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1276885480  30 KDTVYLCGEGGKTYAVLEGGKrLEVSQNLNFYETEFPGF-FLRVHRSFLVAVGRIEGV 86
Cdd:COG3279   150 DDILYIEAEGNYVKIHTKDKK-YLVRKTLKELEEKLPPKqFFRVHRSYIVNLDKIKEI 206
 
Name Accession Description Interval E-value
LytTR pfam04397
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 30-86 8.33e-07

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 427920 [Multi-domain]  Cd Length: 98  Bit Score: 47.20  E-value: 8.33e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1276885480  30 KDTVYLCGEGGKTYAVLEGGKRlEVSQNLNFYETEFPGF-FLRVHRSFLVAVGRIEGV 86
Cdd:pfam04397   9 DDILYIEAEDKYVTIHTANGEY-LTRGTLKELEEKLPPDgFFRCHRSYLVNLNKIKEI 65
LytTR smart00850
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 30-86 5.12e-06

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 197918 [Multi-domain]  Cd Length: 96  Bit Score: 44.87  E-value: 5.12e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1276885480   30 KDTVYLCGEGGKTYAVLEGGKrLEVSQNLNFYETEFPGF-FLRVHRSFLVAVGRIEGV 86
Cdd:smart00850   9 DDILYIEAEGNYVTVHTKDGT-YLVRGTLKELEERLDPDnFFRIHRSYIVNLDHIKEI 65
LytT COG3279
DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction ...
 30-86 1.20e-05

DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction mechanisms];


Pssm-ID: 442510 [Multi-domain]  Cd Length: 235  Bit Score: 46.73  E-value: 1.20e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1276885480  30 KDTVYLCGEGGKTYAVLEGGKrLEVSQNLNFYETEFPGF-FLRVHRSFLVAVGRIEGV 86
Cdd:COG3279   150 DDILYIEAEGNYVKIHTKDKK-YLVRKTLKELEEKLPPKqFFRVHRSYIVNLDKIKEI 206
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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