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Conserved domains on  [gi|1277140760|gb|PIR42131|]
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MAG: hypothetical protein COV30_00045 [Candidatus Yanofskybacteria bacterium CG10_big_fil_rev_8_21_14_0_10_37_15]

Protein Classification

flagellar basal body-associated FliL family protein( domain architecture ID 1598)

flagellar basal body-associated FliL family protein similar to flagellar basal body-associated protein FliL that interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring

Gene Ontology:  GO:0006935|GO:0071973
PubMed:  10439416

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliL super family cl00681
flagellar basal body-associated protein FliL; Reviewed
 3-57 5.64e-03

flagellar basal body-associated protein FliL; Reviewed


The actual alignment was detected with superfamily member PRK07021:

Pssm-ID: 469875 [Multi-domain]  Cd Length: 162  Bit Score: 33.33  E-value: 5.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277140760   3 TIENTQNSGKSKIKLFLsVIGIVIA---ILVFWWWLSHYN----------VASAPVFVP--TSTPEVQND 57
Cdd:PRK07021    6 AIPPAKSGKKRKLWLII-LILLLLAaaaGAGYSWWLSKEQataaakaapaPPPAPVFFPleTFTVNLQPD 74
 
Name Accession Description Interval E-value
fliL PRK07021
flagellar basal body-associated protein FliL; Reviewed
 3-57 5.64e-03

flagellar basal body-associated protein FliL; Reviewed


Pssm-ID: 235909 [Multi-domain]  Cd Length: 162  Bit Score: 33.33  E-value: 5.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277140760   3 TIENTQNSGKSKIKLFLsVIGIVIA---ILVFWWWLSHYN----------VASAPVFVP--TSTPEVQND 57
Cdd:PRK07021    6 AIPPAKSGKKRKLWLII-LILLLLAaaaGAGYSWWLSKEQataaakaapaPPPAPVFFPleTFTVNLQPD 74
 
Name Accession Description Interval E-value
fliL PRK07021
flagellar basal body-associated protein FliL; Reviewed
 3-57 5.64e-03

flagellar basal body-associated protein FliL; Reviewed


Pssm-ID: 235909 [Multi-domain]  Cd Length: 162  Bit Score: 33.33  E-value: 5.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277140760   3 TIENTQNSGKSKIKLFLsVIGIVIA---ILVFWWWLSHYN----------VASAPVFVP--TSTPEVQND 57
Cdd:PRK07021    6 AIPPAKSGKKRKLWLII-LILLLLAaaaGAGYSWWLSKEQataaakaapaPPPAPVFFPleTFTVNLQPD 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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