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Conserved domains on  [gi|1277140763|gb|PIR42134|]
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MAG: hypothetical protein COV30_00060, partial [Candidatus Yanofskybacteria bacterium CG10_big_fil_rev_8_21_14_0_10_37_15]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gamma_PGA_hydro super family cl01713
Poly-gamma-glutamate hydrolase; This family consists of a number of bacterial and phage ...
 1-98 1.11e-28

Poly-gamma-glutamate hydrolase; This family consists of a number of bacterial and phage proteins that function as gamma-PGA hydrolase enzymes. Structurally the protein in this family adopted an open alpha/beta mixed core structure with a seven-stranded parallel/anti-parallel beta-sheet. This structure shows similarity to mammalian carboxypeptidase A and related enzymes.


The actual alignment was detected with superfamily member COG4195:

Pssm-ID: 470314  Cd Length: 214  Bit Score: 102.36  E-value: 1.11e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277140763   1 CESVISIHGEKtKDEEFIMIGGLDKKLGEKIGRIIAGSGFFLKEPPENLKGENPANVCNLGTSGAGVQLELSKKLRDELL 80
Cdd:COG4195   104 SDYVLSIHGCA-GDEETTYVGGLDRALAEAIKEALTRAGFTVKSAPPRLAGTSPENICNRGKSGEGVQLELSTGLRKALF 182

                          90       100
                  ....*....|....*....|....*..
gi 1277140763  81 SNEKL---------MGKFTSLIKQAMA 98
Cdd:COG4195   183 KDFTLlgrarttevFYDFVAAVREALS 209
 
Name Accession Description Interval E-value
YjqB COG4195
Phage-related replication protein YjqB, UPF0714/DUF867 family [Mobilome: prophages, ...
 1-98 1.11e-28

Phage-related replication protein YjqB, UPF0714/DUF867 family [Mobilome: prophages, transposons];


Pssm-ID: 443349  Cd Length: 214  Bit Score: 102.36  E-value: 1.11e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277140763   1 CESVISIHGEKtKDEEFIMIGGLDKKLGEKIGRIIAGSGFFLKEPPENLKGENPANVCNLGTSGAGVQLELSKKLRDELL 80
Cdd:COG4195   104 SDYVLSIHGCA-GDEETTYVGGLDRALAEAIKEALTRAGFTVKSAPPRLAGTSPENICNRGKSGEGVQLELSTGLRKALF 182

                          90       100
                  ....*....|....*....|....*..
gi 1277140763  81 SNEKL---------MGKFTSLIKQAMA 98
Cdd:COG4195   183 KDFTLlgrarttevFYDFVAAVREALS 209
Gamma_PGA_hydro pfam05908
Poly-gamma-glutamate hydrolase; This family consists of a number of bacterial and phage ...
 4-91 7.72e-21

Poly-gamma-glutamate hydrolase; This family consists of a number of bacterial and phage proteins that function as gamma-PGA hydrolase enzymes. Structurally the protein in this family adopted an open alpha/beta mixed core structure with a seven-stranded parallel/anti-parallel beta-sheet. This structure shows similarity to mammalian carboxypeptidase A and related enzymes.


Pssm-ID: 399122  Cd Length: 191  Bit Score: 81.53  E-value: 7.72e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277140763   4 VISIHGEKtKDEEFIMIGGLDKKLGEKIGRIIAGSGFFLKEPPE--NLKGENPANVCNLGTSGAGVQLELSKKLRDELLS 81
Cdd:pfam05908  92 VISIHGYG-GEEEHTLVGGTDRDLAEAIVEALEDAGFSAELAPEgsRLAGTSPDNICNRCKTGEGVQLELSRALRKAFFD 170

                          90
                  ....*....|
gi 1277140763  82 NEKLMGKFTS 91
Cdd:pfam05908 171 NFDLRGRSRT 180
 
Name Accession Description Interval E-value
YjqB COG4195
Phage-related replication protein YjqB, UPF0714/DUF867 family [Mobilome: prophages, ...
 1-98 1.11e-28

Phage-related replication protein YjqB, UPF0714/DUF867 family [Mobilome: prophages, transposons];


Pssm-ID: 443349  Cd Length: 214  Bit Score: 102.36  E-value: 1.11e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277140763   1 CESVISIHGEKtKDEEFIMIGGLDKKLGEKIGRIIAGSGFFLKEPPENLKGENPANVCNLGTSGAGVQLELSKKLRDELL 80
Cdd:COG4195   104 SDYVLSIHGCA-GDEETTYVGGLDRALAEAIKEALTRAGFTVKSAPPRLAGTSPENICNRGKSGEGVQLELSTGLRKALF 182

                          90       100
                  ....*....|....*....|....*..
gi 1277140763  81 SNEKL---------MGKFTSLIKQAMA 98
Cdd:COG4195   183 KDFTLlgrarttevFYDFVAAVREALS 209
Gamma_PGA_hydro pfam05908
Poly-gamma-glutamate hydrolase; This family consists of a number of bacterial and phage ...
 4-91 7.72e-21

Poly-gamma-glutamate hydrolase; This family consists of a number of bacterial and phage proteins that function as gamma-PGA hydrolase enzymes. Structurally the protein in this family adopted an open alpha/beta mixed core structure with a seven-stranded parallel/anti-parallel beta-sheet. This structure shows similarity to mammalian carboxypeptidase A and related enzymes.


Pssm-ID: 399122  Cd Length: 191  Bit Score: 81.53  E-value: 7.72e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277140763   4 VISIHGEKtKDEEFIMIGGLDKKLGEKIGRIIAGSGFFLKEPPE--NLKGENPANVCNLGTSGAGVQLELSKKLRDELLS 81
Cdd:pfam05908  92 VISIHGYG-GEEEHTLVGGTDRDLAEAIVEALEDAGFSAELAPEgsRLAGTSPDNICNRCKTGEGVQLELSRALRKAFFD 170

                          90
                  ....*....|
gi 1277140763  82 NEKLMGKFTS 91
Cdd:pfam05908 171 NFDLRGRSRT 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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