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Conserved domains on  [gi|1278000718|gb|PIV89936|]
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MAG: 30S ribosomal protein S17 [Candidatus Huberarchaeum crystalense]

Protein Classification

uS17 family ribosomal protein( domain architecture ID 10000695)

uS17 family ribosomal protein such as prokaryotic 30S ribosomal protein S17 which is part of the small ribosomal subunit (30S), and fungal mitochondrial 37S ribosomal protein S17 which is part of the mitochondrial small ribosomal subunit (37S)

Gene Ontology:  GO:0015935|GO:0005840|GO:0019843
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 76-157 2.58e-20

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439956  Cd Length: 87  Bit Score: 79.78  E-value: 2.58e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278000718  76 RGIKLIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEiNAASGDTVEIQECRKISKYKSFIVTKILNRG 155
Cdd:COG0186     7 RRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENN-ECKVGDTVRIMETRPLSKTKRWRVVEIVEKA 85


                  ..
gi 1278000718 156 VQ 157
Cdd:COG0186    86 KE 87
 
Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 76-157 2.58e-20

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 79.78  E-value: 2.58e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278000718  76 RGIKLIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEiNAASGDTVEIQECRKISKYKSFIVTKILNRG 155
Cdd:COG0186     7 RRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENN-ECKVGDTVRIMETRPLSKTKRWRVVEIVEKA 85


                  ..
gi 1278000718 156 VQ 157
Cdd:COG0186    86 KE 87
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
 76-155 4.94e-20

30S ribosomal protein S17P; Reviewed


Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 79.57  E-value: 4.94e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278000718  76 RGIKLIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEINAASGDTVEIQECRKISKYKSFIVTKILNRG 155
Cdd:PRK08572   28 RGQVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNPPCIDAKVGDKVKIAECRPLSKTKSFVVVEKKERA 107
uS17_arch TIGR03630
ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal ...
 76-152 9.11e-19

ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal protein S17P. It excludes the homologous ribosomal protein S17 from bacteria, and is not intended for use on eukaryotic sequences, where some instances of ribosomal proteins S11 score above the trusted cutoff. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274687 [Multi-domain]  Cd Length: 102  Bit Score: 76.19  E-value: 9.11e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278000718  76 RGIKLIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEINAASGDTVEIQECRKISKYKSFIVTKIL 152
Cdd:TIGR03630  26 RGQILEGVVVSDKMNKTVVVEREYLYYIRKYERYERRRSKIHAHNPPCIDVKVGDIVIIAETRPLSKTKSFVVLGKV 102
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 80-151 3.40e-18

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 73.62  E-value: 3.40e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1278000718  80 LIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPkEINAASGDTVEIQECRKISKYKSFIVTKI 151
Cdd:cd00364     3 LIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDE-PNECKVGDIVRIGECRPLSKTKRWVVVEI 73
Ribosomal_S17 pfam00366
Ribosomal protein S17;
82-150 9.59e-17

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 69.73  E-value: 9.59e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1278000718  82 GLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEInAASGDTVEIQECRKISKYKSFIVTK 150
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNE-CKVGDVVRIGECRPLSKTKRWVVVE 68
 
Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 76-157 2.58e-20

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 79.78  E-value: 2.58e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278000718  76 RGIKLIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEiNAASGDTVEIQECRKISKYKSFIVTKILNRG 155
Cdd:COG0186     7 RRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENN-ECKVGDTVRIMETRPLSKTKRWRVVEIVEKA 85


                  ..
gi 1278000718 156 VQ 157
Cdd:COG0186    86 KE 87
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
 76-155 4.94e-20

30S ribosomal protein S17P; Reviewed


Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 79.57  E-value: 4.94e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278000718  76 RGIKLIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEINAASGDTVEIQECRKISKYKSFIVTKILNRG 155
Cdd:PRK08572   28 RGQVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNPPCIDAKVGDKVKIAECRPLSKTKSFVVVEKKERA 107
uS17_arch TIGR03630
ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal ...
 76-152 9.11e-19

ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal protein S17P. It excludes the homologous ribosomal protein S17 from bacteria, and is not intended for use on eukaryotic sequences, where some instances of ribosomal proteins S11 score above the trusted cutoff. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274687 [Multi-domain]  Cd Length: 102  Bit Score: 76.19  E-value: 9.11e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278000718  76 RGIKLIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEINAASGDTVEIQECRKISKYKSFIVTKIL 152
Cdd:TIGR03630  26 RGQILEGVVVSDKMNKTVVVEREYLYYIRKYERYERRRSKIHAHNPPCIDVKVGDIVIIAETRPLSKTKSFVVLGKV 102
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 80-151 3.40e-18

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 73.62  E-value: 3.40e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1278000718  80 LIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPkEINAASGDTVEIQECRKISKYKSFIVTKI 151
Cdd:cd00364     3 LIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDE-PNECKVGDIVRIGECRPLSKTKRWVVVEI 73
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 80-156 4.35e-17

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 71.34  E-value: 4.35e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278000718  80 LIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEInAASGDTVEIQECRKISKYKSFIVTKILNRGV 156
Cdd:PRK05610    9 LQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENNE-AKIGDVVRIMETRPLSKTKRWRLVEIVEKAV 84
Ribosomal_S17 pfam00366
Ribosomal protein S17;
82-150 9.59e-17

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 69.73  E-value: 9.59e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1278000718  82 GLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEInAASGDTVEIQECRKISKYKSFIVTK 150
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNE-CKVGDVVRIGECRPLSKTKRWVVVE 68
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
 80-149 3.97e-15

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 66.02  E-value: 3.97e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278000718  80 LIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPKEInAASGDTVEIQECRKISKYKSFIVT 149
Cdd:TIGR03635   4 LQGVVVSDKMDKTVVVLVERRVKHPLYKKIVKRTKKYHAHDENNE-CKVGDVVRIIETRPLSKTKRWRLV 72
rps17 CHL00142
ribosomal protein S17; Validated
 79-158 1.09e-12

ribosomal protein S17; Validated


Pssm-ID: 177064  Cd Length: 84  Bit Score: 60.06  E-value: 1.09e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278000718  79 KLIGLVVSDKMNQTVVVKTQTKDIYPKYHLQYTRTHKIKAHNPkEINAASGDTVEIQECRKISKYKSFIVTKILNRGVQK 158
Cdd:CHL00142    5 EKIGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVHDE-ENECNIGDQVLIEETRPLSKTKRWILKEILSKSSLS 83
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
 72-156 2.01e-05

40S ribosomal protein S11; Provisional


Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 42.38  E-value: 2.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278000718  72 NVIPRGIKLIGLVVSDKMNQTVVVKTQTKDIYPKYHlQYTRTHK-IKAHNPKEINAASGDTVEIQECRKISKYKSFIVTK 150
Cdd:PTZ00241   63 NVSIRGRILRGVVISTKMKRTIIIRRDYLHYVKKYN-RYEKRHKnIPVHCSPCFDVKEGDIVVVGQCRPLSKTVRFNVLK 141


                  ....*.
gi 1278000718 151 ILNRGV 156
Cdd:PTZ00241  142 VEKNEI 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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