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Conserved domains on  [gi|1278273805|gb|PIY25508|]
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hypothetical protein COZ12_00100, partial [Deltaproteobacteria bacterium CG_4_10_14_3_um_filter_60_8]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK04165 super family cl30470
acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
 1-30 4.98e-16

acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional


The actual alignment was detected with superfamily member PRK04165:

Pssm-ID: 235235 [Multi-domain]  Cd Length: 450  Bit Score: 67.96  E-value: 4.98e-16
                          10        20        30
                  ....*....|....*....|....*....|
gi 1278273805   1 MALTGIQILKMLPKKNCGECSIPTCLAFAM 30
Cdd:PRK04165    1 MALTGLDIYKLLPKTNCGECGEPTCLAFAM 30
 
Name Accession Description Interval E-value
PRK04165 PRK04165
acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
 1-30 4.98e-16

acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional


Pssm-ID: 235235 [Multi-domain]  Cd Length: 450  Bit Score: 67.96  E-value: 4.98e-16
                          10        20        30
                  ....*....|....*....|....*....|
gi 1278273805   1 MALTGIQILKMLPKKNCGECSIPTCLAFAM 30
Cdd:PRK04165    1 MALTGLDIYKLLPKTNCGECGEPTCLAFAM 30
CdhE COG1456
CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production ...
 1-30 8.88e-16

CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion];


Pssm-ID: 441065 [Multi-domain]  Cd Length: 442  Bit Score: 67.36  E-value: 8.88e-16
                          10        20        30
                  ....*....|....*....|....*....|
gi 1278273805   1 MALTGIQILKMLPKKNCGECSIPTCLAFAM 30
Cdd:COG1456     1 MALTPLEIYKLLPKTNCKECGEPTCMAFAM 30
FeS pfam04060
Putative Fe-S cluster; This family includes a domain with four conserved cysteines that ...
 12-30 1.49e-04

Putative Fe-S cluster; This family includes a domain with four conserved cysteines that probably form an Fe-S redox cluster.


Pssm-ID: 461150 [Multi-domain]  Cd Length: 33  Bit Score: 33.17  E-value: 1.49e-04
                         10
                 ....*....|....*....
gi 1278273805 12 LPKKNCGECSIPTCLAFAM 30
Cdd:pfam04060  1 LPGTNCGACGYPGCRAFAE 19
 
Name Accession Description Interval E-value
PRK04165 PRK04165
acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
 1-30 4.98e-16

acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional


Pssm-ID: 235235 [Multi-domain]  Cd Length: 450  Bit Score: 67.96  E-value: 4.98e-16
                          10        20        30
                  ....*....|....*....|....*....|
gi 1278273805   1 MALTGIQILKMLPKKNCGECSIPTCLAFAM 30
Cdd:PRK04165    1 MALTGLDIYKLLPKTNCGECGEPTCLAFAM 30
CdhE COG1456
CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production ...
 1-30 8.88e-16

CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion];


Pssm-ID: 441065 [Multi-domain]  Cd Length: 442  Bit Score: 67.36  E-value: 8.88e-16
                          10        20        30
                  ....*....|....*....|....*....|
gi 1278273805   1 MALTGIQILKMLPKKNCGECSIPTCLAFAM 30
Cdd:COG1456     1 MALTPLEIYKLLPKTNCKECGEPTCMAFAM 30
COG4871 COG4871
Metal-binding trascriptional regulator, contains Fe-S cluster and ArsR family DNA binding ...
 6-30 5.93e-08

Metal-binding trascriptional regulator, contains Fe-S cluster and ArsR family DNA binding domain [Transcription];


Pssm-ID: 443899  Cd Length: 177  Bit Score: 44.52  E-value: 5.93e-08
                          10        20
                  ....*....|....*....|....*
gi 1278273805   6 IQILKMLPKKNCGECSIPTCLAFAM 30
Cdd:COG4871   115 IEIYKLLPKTNCGKCGEPTCMAFAA 139
FeS pfam04060
Putative Fe-S cluster; This family includes a domain with four conserved cysteines that ...
 12-30 1.49e-04

Putative Fe-S cluster; This family includes a domain with four conserved cysteines that probably form an Fe-S redox cluster.


Pssm-ID: 461150 [Multi-domain]  Cd Length: 33  Bit Score: 33.17  E-value: 1.49e-04
                         10
                 ....*....|....*....
gi 1278273805 12 LPKKNCGECSIPTCLAFAM 30
Cdd:pfam04060  1 LPGTNCGACGYPGCRAFAE 19
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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