|
Name |
Accession |
Description |
Interval |
E-value |
| TupA |
COG4662 |
ABC-type tungstate transport system, periplasmic component [Inorganic ion transport and ... |
1-231 |
1.26e-99 |
|
ABC-type tungstate transport system, periplasmic component [Inorganic ion transport and metabolism];
Pssm-ID: 443699 [Multi-domain] Cd Length: 232 Bit Score: 288.93 E-value: 1.26e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 1 MDSIIEGFLKAFSLIYNLNQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLF 80
Cdd:COG4662 1 MDYILEGFAEALRLLLSGDPELWEIVLLSLRVSLTATLIAALIGLPLGALLALKRFPGRRLVISLLNTLMGLPPVVVGLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 81 LYLILSRSGPLGFMGLLYTPSAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITIINEARYGILSGI 160
Cdd:COG4662 81 VYLLLSRSGPLGFLGLLFTPTAMIIAQTVLALPIVAALTRAAVEDLDRRLRETLRSLGASRLQALLTLLWEARFGLLAAV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1278344984 161 IAGFGRVMAEVGAILIVGGNIAGYTRVMTTTIALETDKGNFELALALGIILLTLSLIINVVLHLFQKKGMI 231
Cdd:COG4662 161 LAGFGRAISEVGAVMMVGGNIKGYTRVMTTAIALETSKGEFALAIALGIVLLAIALLVNALLSLLQGRGRR 231
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
29-202 |
2.38e-79 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 235.90 E-value: 2.38e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 29 SLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLGFMGLLYTPSAMVTAQT 108
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFLGLLYTPTAMIIAQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 109 ILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITIINEARYGILSGIIAGFGRVMAEVGAILIVGGNIAGYTRVM 188
Cdd:NF038017 81 VLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARFALLAAVLAGFGRAISEVGAVMMVGGNIRGYTRVL 160
|
170
....*....|....
gi 1278344984 189 TTTIALETDKGNFE 202
Cdd:NF038017 161 TTAIVLETSKGNFD 174
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
18-202 |
1.19e-21 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 89.38 E-value: 1.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 18 LNQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLG----- 92
Cdd:TIGR01581 15 TDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGpylea 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 93 -FMGLLYTPSAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITI-INEARYGILSGIIAGFGRVMAE 170
Cdd:TIGR01581 95 aGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKItLPMARPGLLAGLVLAWARALGE 174
|
170 180 190
....*....|....*....|....*....|..
gi 1278344984 171 VGAILIVGGNIAGYTRVMTTTIALETDKGNFE 202
Cdd:TIGR01581 175 FGATLMFAGSIQGKTRTLPLAIYLNIQSDNIE 206
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
17-186 |
5.99e-20 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 84.59 E-value: 5.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 17 NLNQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLG---- 92
Cdd:PRK09421 2 ILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGqwly 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 93 -FMGLLYTPS--AMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITI-INEARYGILSGIIAGFGRVM 168
Cdd:PRK09421 82 eWFGISFAFSwrGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTItLPLTLPGIIAGTVLAFARSL 161
|
170
....*....|....*...
gi 1278344984 169 AEVGAILIVGGNIAGYTR 186
Cdd:PRK09421 162 GEFGATITFVSNIPGETQ 179
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
26-192 |
7.98e-10 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 56.52 E-value: 7.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 26 IFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLGFMGLLYTPSAMVT 105
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 106 aqTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITII-NEARYGILSGIIAGFGRVMAEVGAILIVGGNIAGY 184
Cdd:cd06261 81 --LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIIlPLALPPILTGLVLAFARALGEFALVSFLGGGEAPG 158
|
....*...
gi 1278344984 185 TRVMTTTI 192
Cdd:cd06261 159 PGTGLLLI 166
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TupA |
COG4662 |
ABC-type tungstate transport system, periplasmic component [Inorganic ion transport and ... |
1-231 |
1.26e-99 |
|
ABC-type tungstate transport system, periplasmic component [Inorganic ion transport and metabolism];
Pssm-ID: 443699 [Multi-domain] Cd Length: 232 Bit Score: 288.93 E-value: 1.26e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 1 MDSIIEGFLKAFSLIYNLNQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLF 80
Cdd:COG4662 1 MDYILEGFAEALRLLLSGDPELWEIVLLSLRVSLTATLIAALIGLPLGALLALKRFPGRRLVISLLNTLMGLPPVVVGLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 81 LYLILSRSGPLGFMGLLYTPSAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITIINEARYGILSGI 160
Cdd:COG4662 81 VYLLLSRSGPLGFLGLLFTPTAMIIAQTVLALPIVAALTRAAVEDLDRRLRETLRSLGASRLQALLTLLWEARFGLLAAV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1278344984 161 IAGFGRVMAEVGAILIVGGNIAGYTRVMTTTIALETDKGNFELALALGIILLTLSLIINVVLHLFQKKGMI 231
Cdd:COG4662 161 LAGFGRAISEVGAVMMVGGNIKGYTRVMTTAIALETSKGEFALAIALGIVLLAIALLVNALLSLLQGRGRR 231
|
|
| ABC_perm1 |
NF038017 |
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ... |
29-202 |
2.38e-79 |
|
ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.
Pssm-ID: 411610 [Multi-domain] Cd Length: 184 Bit Score: 235.90 E-value: 2.38e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 29 SLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLGFMGLLYTPSAMVTAQT 108
Cdd:NF038017 1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFLGLLYTPTAMIIAQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 109 ILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITIINEARYGILSGIIAGFGRVMAEVGAILIVGGNIAGYTRVM 188
Cdd:NF038017 81 VLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARFALLAAVLAGFGRAISEVGAVMMVGGNIRGYTRVL 160
|
170
....*....|....
gi 1278344984 189 TTTIALETDKGNFE 202
Cdd:NF038017 161 TTAIVLETSKGNFD 174
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
26-192 |
5.82e-23 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 93.66 E-value: 5.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 26 IFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLGFM------GLLYT 99
Cdd:COG0555 56 LKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLlaplgiKVAFT 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 100 PSAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITII-NEARYGILSGIIAGFGRVMAEVGAILIVG 178
Cdd:COG0555 136 PLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVIlPLLLPALLTGFALAFARALGEFGAVIFIA 215
|
170
....*....|....
gi 1278344984 179 GNIAGYTRVMTTTI 192
Cdd:COG0555 216 GNLPMKTEILPLLI 229
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
18-202 |
1.19e-21 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 89.38 E-value: 1.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 18 LNQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLG----- 92
Cdd:TIGR01581 15 TDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGpylea 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 93 -FMGLLYTPSAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITI-INEARYGILSGIIAGFGRVMAE 170
Cdd:TIGR01581 95 aGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKItLPMARPGLLAGLVLAWARALGE 174
|
170 180 190
....*....|....*....|....*....|..
gi 1278344984 171 VGAILIVGGNIAGYTRVMTTTIALETDKGNFE 202
Cdd:TIGR01581 175 FGATLMFAGSIQGKTRTLPLAIYLNIQSDNIE 206
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
17-186 |
5.99e-20 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 84.59 E-value: 5.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 17 NLNQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLG---- 92
Cdd:PRK09421 2 ILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGqwly 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 93 -FMGLLYTPS--AMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITI-INEARYGILSGIIAGFGRVM 168
Cdd:PRK09421 82 eWFGISFAFSwrGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTItLPLTLPGIIAGTVLAFARSL 161
|
170
....*....|....*...
gi 1278344984 169 AEVGAILIVGGNIAGYTR 186
Cdd:PRK09421 162 GEFGATITFVSNIPGETQ 179
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
19-180 |
2.91e-16 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 75.53 E-value: 2.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 19 NQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRsgplgfMGLLY 98
Cdd:COG1177 56 DPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA------LGLSG 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 99 TPSAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITII-NEARYGILSGIIAGFGRVMAEVGAILIV 177
Cdd:COG1177 130 GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTlPLIAPGILAGALLAFTLSFDEFVITLFL 209
|
...
gi 1278344984 178 GGN 180
Cdd:COG1177 210 AGP 212
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
22-192 |
5.57e-13 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 67.49 E-value: 5.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 22 LLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPL-----GFMGL 96
Cdd:COG1178 52 LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLntllrALFGL 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 97 ----LYTPSAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITII-NEARYGILSGIIAGFGRVMAEV 171
Cdd:COG1178 132 eppdIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTlPLLRPAIAAGALLVFLLCLADF 211
|
170 180
....*....|....*....|.
gi 1278344984 172 GAILIVGGNIagytRVMTTTI 192
Cdd:COG1178 212 GTPLVLGGGY----TTLTTAI 228
|
|
| PstA |
COG0581 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
26-180 |
1.78e-12 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440346 [Multi-domain] Cd Length: 259 Bit Score: 64.67 E-value: 1.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 26 IFLSLKVSGIALIISSIIGVPAGtiIGLRKFPGRGFIISLL----NTFMGLPPVVVGLFLYLILSRSGPLGFMGLlytpS 101
Cdd:COG0581 43 IVGTLLLVLLATLIAVPLGVLAA--IYLAEYARGGRLARLIrfaiDVLAGVPSIVYGLFGYALFVLTLGLGFSLL----A 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 102 AMVTAqTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITII-NEARYGILSGIIAGFGRVMAEVGAILIVGGN 180
Cdd:COG0581 117 GALAL-ALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVlPAALPGILTGVILAIARAAGETAPLLFTAGV 195
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
18-178 |
2.35e-12 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 65.57 E-value: 2.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 18 LNQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLGFMGll 97
Cdd:COG1178 332 LDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLYG-- 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 98 yTPSAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITII-NEARYGILSGIIAGFGRVMAEVGAILI 176
Cdd:COG1178 410 -TLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTlPLLRPGLLAAALLVFVTSMKELSATLL 488
|
..
gi 1278344984 177 VG 178
Cdd:COG1178 489 LR 490
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
28-182 |
2.47e-11 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 61.18 E-value: 2.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 28 LSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLGF------MGLLYTPS 101
Cdd:CHL00187 59 LTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHllshlgIQIVFTKL 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 102 AMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITIINEARY-GILSGIIAGFGRVMAEVGAILIVGGN 180
Cdd:CHL00187 139 GVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIpALLTGLALTFSRAIGEYGSIVIISSN 218
|
..
gi 1278344984 181 IA 182
Cdd:CHL00187 219 IP 220
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
19-192 |
5.98e-10 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 57.84 E-value: 5.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 19 NQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLGF----- 93
Cdd:PRK10971 53 NPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEwlakf 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 94 -MGLLYTPSAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITII-NEARYGILSGIIAGFGRVMAEV 171
Cdd:PRK10971 133 dIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVlPELSPALLAGVALSFTRSLGEF 212
|
170 180
....*....|....*....|.
gi 1278344984 172 GAILIVGGNIAGYTRVMTTTI 192
Cdd:PRK10971 213 GAVIFIAGNIAWKTEVTSLMI 233
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
26-192 |
7.98e-10 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 56.52 E-value: 7.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 26 IFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRSGPLGFMGLLYTPSAMVT 105
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 106 aqTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITII-NEARYGILSGIIAGFGRVMAEVGAILIVGGNIAGY 184
Cdd:cd06261 81 --LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIIlPLALPPILTGLVLAFARALGEFALVSFLGGGEAPG 158
|
....*...
gi 1278344984 185 TRVMTTTI 192
Cdd:cd06261 159 PGTGLLLI 166
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
22-195 |
2.28e-09 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 56.12 E-value: 2.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 22 LLGIIFLSLKVSGIALIISSIIGVPAGTIIG-LRKFPGRGFIISLLNTFMGLPPVVVGL--------FLYLILSRSGPLG 92
Cdd:TIGR02138 61 ALPLIVGTLITSLIALLIAVPVGIGIAIFLSeIAPKRVRSVLKPVVELLAGIPSVVYGFwglfvlvpFLKPHFQPFLGSN 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 93 FMGLLYTPSAMVTAQTILA---LPIVASLCHSAIVTVDPIIGQAAITLGATPYQK-AITIINEARYGILSGIIAGFGRVM 168
Cdd:TIGR02138 141 LGLIPLFGGPILTAGIVLAimiLPTIASISRDALRAVPRSYKEASYALGATKWETiRRVILPAARSGIVGAVVLGLGRAL 220
|
170 180 190
....*....|....*....|....*....|....*
gi 1278344984 169 AEVGAILIVGGN--------IAGYTRVMTTTIALE 195
Cdd:TIGR02138 221 GETMAVTMVIGNvfpisplsLFDPGTTITSLIANQ 255
|
|
| cysW |
PRK11602 |
sulfate/thiosulfate ABC transporter permease CysW; |
8-185 |
7.89e-08 |
|
sulfate/thiosulfate ABC transporter permease CysW;
Pssm-ID: 183225 Cd Length: 283 Bit Score: 51.68 E-value: 7.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 8 FLKAFS-----LIYNL-NQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFL 81
Cdd:PRK11602 42 FVQAFSkglmpVLQNLaDPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVY 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 82 YLILSRSGPLGF------MGLLYTPSAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQ--KAITIINeAR 153
Cdd:PRK11602 122 LLFYGSNGPLGGwldehnLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQmfRRVTLPN-IR 200
|
170 180 190
....*....|....*....|....*....|..
gi 1278344984 154 YGILSGIIAGFGRVMAEVGAILIVGGNIAGYT 185
Cdd:PRK11602 201 WALLYGVVLTNARAIGEFGAVSVVSGSIRGET 232
|
|
| 3a0107s02c |
TIGR00974 |
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ... |
26-186 |
2.38e-07 |
|
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273373 Cd Length: 271 Bit Score: 50.31 E-value: 2.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 26 IFLSLKVSGIALIISSIIGVPAGtiIGLRKFPGRGFIIS----LLNTFMGLPPVVVGLFLY-LILSRSGPLGFMGLlytp 100
Cdd:TIGR00974 56 IVGTLLLTLLAIVIAVPLGIGAA--IYLAEYANGSRFTKiirfAVDILAGVPSIVVGLFGYgFFVLTYLGGGFSLL---- 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 101 sAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITII-NEARYGILSGIIAGFGRVMAEVGAILIVGG 179
Cdd:TIGR00974 130 -AGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVlPAALPGILTGIILSIARAAGETAPLLFTAG 208
|
....*..
gi 1278344984 180 NIAGYTR 186
Cdd:TIGR00974 209 GSAFTPP 215
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
19-149 |
6.91e-05 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 42.83 E-value: 6.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 19 NQELLGIIFLSLKVSGIALIISSIIGVPAGTIIGLRKFpGRGFIISLLNTFMGLPPVVVGLFLYLILsrsgplgfmGLLY 98
Cdd:COG0600 56 SGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL-LRRLLDPLLVFLRPIPPLALAPLLILWF---------GIGE 125
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1278344984 99 TPSAMVTAqtILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQKAITII 149
Cdd:COG0600 126 ASKIFVIF--LGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVV 174
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
29-143 |
2.17e-04 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 41.23 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 29 SLKVSGIALIISSIIGVPAGTIIGLRKFPGRGFIISLLNTFMGLPPVVVGLFLYLILSRsgplgfMGLLYTPSAMVTAQT 108
Cdd:COG0395 79 SLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQ------LGLLNTYWGLILPYL 152
|
90 100 110
....*....|....*....|....*....|....*
gi 1278344984 109 ILALPIVASLCHSAIVTVDPIIGQAAITLGATPYQ 143
Cdd:COG0395 153 AFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFR 187
|
|
| pstA |
PRK11268 |
phosphate ABC transporter permease PstA; |
26-175 |
1.55e-03 |
|
phosphate ABC transporter permease PstA;
Pssm-ID: 183065 [Multi-domain] Cd Length: 295 Bit Score: 38.90 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278344984 26 IFLSLKVSGIALIISSIIGVPAGtiIGLRKFPGRGFIISLL----NTFMGLPPVVVGLFLY-LILSRSGplGFMGLlytp 100
Cdd:PRK11268 83 IAGSGLLILWATVVGTPLGIMAG--IYLAEYGRKSWLAEVIrfinDILLSAPSIVVGLFVYtIVVAQME--HFSGW---- 154
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278344984 101 sAMVTAQTILALPIVASLCHSAIVTVDPIIGQAAITLGaTPYQKAITIIN--EARYGILSGIIAGFGRVMAEVGAIL 175
Cdd:PRK11268 155 -AGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALG-TPKWKMISAITlkASVSGIMTGVLLAIARIAGETAPLL 229
|
|
| |
