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Conserved domains on  [gi|1278528997|gb|PJA47780.1|]
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50S ribosomal protein L33 [Candidatus Uhrbacteria bacterium CG_4_9_14_3_um_filter_36_7]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011455)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 6-51 6.80e-13

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440037  Cd Length: 52  Bit Score: 55.55  E-value: 6.80e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 1278528997  6 QIKLECTDCSYIGYFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:COG0267    7 KITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
 
Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 6-51 6.80e-13

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 55.55  E-value: 6.80e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 1278528997  6 QIKLECTDCSYIGYFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:COG0267    7 KITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG PRK00504
50S ribosomal protein L33; Validated
 7-51 4.45e-11

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 51.07  E-value: 4.45e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1278528997  7 IKLECTDCSYIGYFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:PRK00504   6 ITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
Ribosomal_L33 pfam00471
Ribosomal protein L33;
7-51 2.41e-10

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 48.96  E-value: 2.41e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1278528997  7 IKLECTDCSYIGYFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:pfam00471  2 ITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 7-51 1.59e-08

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 44.75  E-value: 1.59e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1278528997  7 IKLECTDCSYIGYFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:TIGR01023 10 IRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 6-51 6.80e-13

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 55.55  E-value: 6.80e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 1278528997  6 QIKLECTDCSYIGYFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:COG0267    7 KITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG PRK00504
50S ribosomal protein L33; Validated
 7-51 4.45e-11

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 51.07  E-value: 4.45e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1278528997  7 IKLECTDCSYIGYFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:PRK00504   6 ITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
Ribosomal_L33 pfam00471
Ribosomal protein L33;
7-51 2.41e-10

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 48.96  E-value: 2.41e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1278528997  7 IKLECTDCSYIGYFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:pfam00471  2 ITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG PRK00595
50S ribosomal protein L33; Validated
 6-51 1.71e-09

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 47.11  E-value: 1.71e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 1278528997  6 QIKLECTDCSYIGYFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:PRK00595   8 KIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 7-51 1.59e-08

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 44.75  E-value: 1.59e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1278528997  7 IKLECTDCSYIGYFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:TIGR01023 10 IRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
rpl33 CHL00104
ribosomal protein L33
 6-51 1.79e-05

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 37.26  E-value: 1.79e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1278528997  6 QIKLECTDCSYIG----------YFSRKNKKVIKDRLEIKKFCKKCRVHKLHKETK 51
Cdd:CHL00104  10 TVILECTSCVRNGvnkestgisrYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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