NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1304805942|gb|PKF95514|]
View 

hypothetical protein CW365_21350 [Bacillus cereus]

Protein Classification

YxiJ-like family protein( domain architecture ID 10624466)

YxiJ-like family protein similar to Bacillus subtilis uncharacterized protein YxiJ

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YxiJ pfam14176
YxiJ-like protein; The YxiJ-like protein family includes the B. subtilis YxiJ protein, which ...
 9-118 2.21e-59

YxiJ-like protein; The YxiJ-like protein family includes the B. subtilis YxiJ protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.


:

Pssm-ID: 404955  Cd Length: 110  Bit Score: 178.10  E-value: 2.21e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1304805942   9 FNELQKMHSPLHKPFPNCDIRKIRKDFNNMFTEDDCISADLNYYWMHTAGTLSYVLNNNEQEIVFNQIKWLRKSFFEWFP 88
Cdd:pfam14176   1 INDLQRMHSPLHKPFPSEDIVKIEEDFGKDFTKDDCISADFNEYCMLIAGTLSYVLNHKEQKIPFKQIKWLRKSFFEWYP 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1304805942  89 QYRFLETEIMKYPILYRDFMNYEKTRKLLL 118
Cdd:pfam14176  81 QYKFLETELEKYPILYRDFQNHEETRKLLL 110
 
Name Accession Description Interval E-value
YxiJ pfam14176
YxiJ-like protein; The YxiJ-like protein family includes the B. subtilis YxiJ protein, which ...
 9-118 2.21e-59

YxiJ-like protein; The YxiJ-like protein family includes the B. subtilis YxiJ protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.


Pssm-ID: 404955  Cd Length: 110  Bit Score: 178.10  E-value: 2.21e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1304805942   9 FNELQKMHSPLHKPFPNCDIRKIRKDFNNMFTEDDCISADLNYYWMHTAGTLSYVLNNNEQEIVFNQIKWLRKSFFEWFP 88
Cdd:pfam14176   1 INDLQRMHSPLHKPFPSEDIVKIEEDFGKDFTKDDCISADFNEYCMLIAGTLSYVLNHKEQKIPFKQIKWLRKSFFEWYP 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1304805942  89 QYRFLETEIMKYPILYRDFMNYEKTRKLLL 118
Cdd:pfam14176  81 QYKFLETELEKYPILYRDFQNHEETRKLLL 110
 
Name Accession Description Interval E-value
YxiJ pfam14176
YxiJ-like protein; The YxiJ-like protein family includes the B. subtilis YxiJ protein, which ...
 9-118 2.21e-59

YxiJ-like protein; The YxiJ-like protein family includes the B. subtilis YxiJ protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.


Pssm-ID: 404955  Cd Length: 110  Bit Score: 178.10  E-value: 2.21e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1304805942   9 FNELQKMHSPLHKPFPNCDIRKIRKDFNNMFTEDDCISADLNYYWMHTAGTLSYVLNNNEQEIVFNQIKWLRKSFFEWFP 88
Cdd:pfam14176   1 INDLQRMHSPLHKPFPSEDIVKIEEDFGKDFTKDDCISADFNEYCMLIAGTLSYVLNHKEQKIPFKQIKWLRKSFFEWYP 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1304805942  89 QYRFLETEIMKYPILYRDFMNYEKTRKLLL 118
Cdd:pfam14176  81 QYKFLETELEKYPILYRDFQNHEETRKLLL 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH