|
Name |
Accession |
Description |
Interval |
E-value |
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
42-386 |
5.28e-132 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 383.07 E-value: 5.28e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 42 GFDDKEIRIGQWGPQTGPAAPWGSVAR-GSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVG 120
Cdd:cd06343 1 GVTDDEIKIGTSLPLSGPAAAYGKPVRaGAAAYFDEVNAAGGINGRKIELIVEDDGYDPARAVAAVRKLVEQDKVFAIVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 121 GVSAAAGLAVKDYLAQNKVIWVGPATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGL 200
Cdd:cd06343 81 GLGTPTNLAVRPYLNEAGVPQLFPATGASALSPPPKPYTFGVQPSYEDEGRILADYIVETLPAAKVAVLYQNDDFGKDGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 201 EGVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALMY 280
Cdd:cd06343 161 EGLKEALKAYGLEVVAEETYEPGDTDFSSQVLKLKAAGADVVVLGTLPKEAAAALKEAAKLGWKPTFLGSSVSADPTTLA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 281 KISGGLWEGVITGAFSEPPDSAS-PLMVKYREAAKRMAPTERWGLFYMAGIMFAEPFVDALKRVGPNLSTEACLKALNET 359
Cdd:cd06343 241 KAGGDAAEGVYSASYLKDPTDADdPAVKEFREAYKKYFPDDPPNAYALYGYAAAQVFVEALKRAGKDLTREGLIKALESL 320
|
330 340
....*....|....*....|....*....
gi 1308826064 360 TNFQ--GVGPKVTWTASQHQGSDSVMIWK 386
Cdd:cd06343 321 KDFDdgGPGPPVTFSPDDHRGIESMYLVQ 349
|
|
| PBP1_ABC_ligand_binding-like |
cd19978 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
48-382 |
7.90e-73 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380633 [Multi-domain] Cd Length: 341 Bit Score: 231.31 E-value: 7.90e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 48 IRIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAA 126
Cdd:cd19978 1 IRLGMSAALSGPAAELGnEMKRGIEAAFNEVNAQGGVNGRKIKLIALDDGYEPDRTVKNTKKLIEEDKVFALIGYVGTPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 127 GLAVKDYLAQNKVIWVGPATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVKQR 206
Cdd:cd19978 81 ALAALPLANEKKIPLFGPFTGAEFLRTPFLPYVFNLRASYADETEALVDYLVKTLGPKRIAIFYQNDAFGLAGLEGAKKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 207 MNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMwIA---PTTAVIalKTSASIGFKPQWVS-SNTLSDYALMYKI 282
Cdd:cd19978 161 LKKRGLTPVAEGSYTRNTLDVEEALAKILKAKPEAIIL-VGtyaPAAEFI--RLARAAGLNPLFANvSFVGSEALALELG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 283 SGGlwEGVItgaFSE----PPDSASPLMVKYREAAKRMAPTERWGLF----YMAGIMfaepFVDALKRVGPNLSTEACLK 354
Cdd:cd19978 238 DYG--EGVI---VSQvvpdPNDSSLPIVKEYREAMKKYGPNAPPDFVslegYLAARL----LVEALKKAGPPLTREKLLA 308
|
330 340
....*....|....*....|....*...
gi 1308826064 355 ALNETTNFQGVGPKVTWTASQHQGSDSV 382
Cdd:cd19978 309 LEESLKNDLGKGLTLTFSPNDHQGSDKV 336
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
45-391 |
4.79e-70 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 223.27 E-value: 4.79e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 45 DKEIRIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVS 123
Cdd:COG0683 1 ADPIKIGVLLPLTGPYAALGqPIKNGAELAVEEINAAGGVLGRKIELVVEDDASDPDTAVAAARKLIDQDKVDAIVGPLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 124 AAAGLAVKDYLAQNKVIWVGP-ATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEG 202
Cdd:COG0683 81 SGVALAVAPVAEEAGVPLISPsATAPALTGPECSPYVFRTAPSDAQQAEALADYLAKKLGAKKVALLYDDYAYGQGLAAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 203 VKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSsntlsdyalmyki 282
Cdd:COG0683 161 FKAALKAAGGEVVGEEYYPPGTTDFSAQLTKIKAAGPDAVFLAGYGGDAALFIKQAREAGLKGPLNK------------- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 283 sgglwegvitgAFSEppdsasplmvKYREAAKRMaPTERWGLFYMAGIMFAEpfvdALKRVGPNlSTEACLKALnETTNF 362
Cdd:COG0683 228 -----------AFVK----------AYKAKYGRE-PSSYAAAGYDAALLLAE----AIEKAGST-DREAVRDAL-EGLKF 279
|
330 340
....*....|....*....|....*....
gi 1308826064 363 QGVGPKVTWTASqHQGSDSVMIWKCGPNG 391
Cdd:COG0683 280 DGVTGPITFDPD-GQGVQPVYIVQVKADG 307
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
47-391 |
1.00e-66 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 215.60 E-value: 1.00e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 47 EIRIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAA 125
Cdd:pfam13458 1 PIKIGVLTPLSGPYASSGkSSRAGARAAIEEINAAGGVNGRKIELVVADDQGDPDVAAAAARRLVDQDGVDAIVGGVSSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 126 AGLAVKDYLAQNKVIWVGPATSVKEyvfPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVKQ 205
Cdd:pfam13458 81 VALAVAEVLAKKGVPVIGPAALTGE---KCSPYVFSLGPTYSAQATALGRYLAKELGGKKVALIGADYAFGRALAAAAKA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 206 RMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDY-ALMYKISG 284
Cdd:pfam13458 158 AAKAAGGEVVGEVRYPLGTTDFSSQVLQIKASGADAVLLANAGADTVNLLKQAREAGLDAKGIKLVGLGGDePDLKALGG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 285 GLWEGVITGAFSEpPDSASPLMVKYREAAKRMAPTERWGLFYMAGIMFAEPFVDALKRVGPnLSTEACLKALnETTNFQG 364
Cdd:pfam13458 238 DAAEGVYATVPFF-PDLDNPATRAFVAAFAAKYGEAPPTQFAAGGYIAADLLLAALEAAGS-PTREAVIAAL-RALPYDG 314
|
330 340
....*....|....*....|....*..
gi 1308826064 365 VGPKVTWTASQHQGSDSVMIWKCGPNG 391
Cdd:pfam13458 315 PFGPVGFRAEDHQAVHCMYLVQVKADG 341
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
48-382 |
1.64e-64 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 209.71 E-value: 1.64e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 48 IRIGQWGPQTGPAAPWGS-VARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAA 126
Cdd:cd06326 1 IVIGQSAPLSGPLAELGReYLAGAKAYFDQVNAAGGINGRKIRLVTLDDGYDPARTVENTRQLIEQDKVVALFGYVGTAN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 127 GLAVKDYLAQNKVIWVGPATSVKEYVFPVNPYLFSVYPLYEDEAsiltQYIVEKLK---FKKIGVFYQNDPYGKNGLEGV 203
Cdd:cd06326 81 VEAVLPLLEEAGVPLVGPLTGADSLREPGNPYVFHVRASYADEV----EKIVRHLAtlgLKRIAVVYQDDPFGKEGLAAA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 204 KQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMwIAPTTAVIAL-KTSASIGFKPQ-WVSSNTLSDyaLMYK 281
Cdd:cd06326 157 EAALAARGLEPVATAAVARNAADVAAAAAALAAAKPQAVVL-IAAGKAAAAFiKALRAAGGAAQfYGLSVVGAA--ALAK 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 282 ISGGLWEGV-ITGAFSEPPDSASPLMVKYREAAKRMAPTErWGLFYMAGIMFAEPFVDALKRVGPNLSTEACLKALNETT 360
Cdd:cd06326 234 ALGDAARGVvVSQVVPNPWSTTLPLVREYQAAMKAAGPKE-PSYASLEGYIAARVLVEALRRAGRNPTRESLVAALESLG 312
|
330 340
....*....|....*....|..
gi 1308826064 361 NFQGVGPKVTWTASQHQGSDSV 382
Cdd:cd06326 313 RLDLGGFTVDFSPGNHTGSRFV 334
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-385 |
5.15e-57 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 190.51 E-value: 5.15e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGsdilFNLA----NEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVS 123
Cdd:cd06335 1 KIGVIGPLTGPSAELGeSARRG----VELAveeiNAAGGILGRKIELVERDDEANPTKAVQNAQELIDKEKVVAIIGPTN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 124 AAAGLAVKDYLAQNKVIWVGP---ATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKlKFKKIGVFYQNDPYGKNGL 200
Cdd:cd06335 77 SGVALATIPILQEAKIPLIIPvatGTAITKPPAKPRNYIFRVAASDTLQADFLVDYAVKK-GFKKIAILHDTTGYGQGGL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 201 EGVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMW-IAPTTAVIaLKTSASIGFKPQWVSSNTLSDYALm 279
Cdd:cd06335 156 KDVEAALKKRGITPVATESFKIGDTDMTPQLLKAKDAGADVILVYgLGPDLAQI-LKAMEKLGWKVPLVGSWGLSMPNF- 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 280 YKISGGLWEGVI-TGAFSEppDSASPLMVKYREAAKRMAPTERWGLFYMAG-------IMFAepfvdALKRVGpnlSTE- 350
Cdd:cd06335 234 IELAGPLAEGTImTQTFIE--DYLTPRAKKFIDAYKKKYGTDRIPSPVSAAqgydavyLLAA-----AIKQAG---STDg 303
|
330 340 350
....*....|....*....|....*....|....*...
gi 1308826064 351 -ACLKALNETTNFQGV--GPKVTWTASQHQGSDSVMIW 385
Cdd:cd06335 304 kKIRAALENLKGYVGGvkTYNKPFSKTDHEALDVSMVV 341
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
49-333 |
3.50e-53 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 179.06 E-value: 3.50e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd06268 1 KIGVVVPLTGPYADYGeEILRGVALAVEEINAAGGINGRKLELVIADDQGDPETAVAVARKLVDDDKVLAVVGHYSSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGPATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVKQRM 207
Cdd:cd06268 81 LAAAPIYQEAGIPLISPGSTAPELTEGGGPYVFRTVPSDAMQAAALADYLAKKLKGKKVAILYDDYDYGKSLADAFKKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 208 NKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALMyKISGGLW 287
Cdd:cd06268 161 KALGGEIVAEEDFPLGTTDFSAQLTKIKAAGPDVLFLAGYGADAANALKQARELGLKLPILGGDGLYSPELL-KLGGEAA 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1308826064 288 EGVITGA--FSEPPDSASPLMVKYREAAKRMAPTERWGLFYMAGIMFA 333
Cdd:cd06268 240 EGVVVAVpwHPDSPDPPKQAFVKAYKKKYGGPPSWRAATAYDATQALA 287
|
|
| PBP1_ABC_HAAT-like |
cd19988 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-323 |
1.78e-48 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 166.68 E-value: 1.78e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGSVAR-GSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd19988 1 KIGVFGPLSGDAAPYGQAMLqGAELAVEEINAAGGILGIPIELVVEDDEGLPAASVSAAKKLIYQDKVWAIIGSINSSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGPATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVKQRM 207
Cdd:cd19988 81 LAAIRVALKAGVPQINPGSSAPTITESGNPWVFRCTPDDRQQAYALVDYAFEKLKVTKIAVLYVNDDYGRGGIDAFKDAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 208 NKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALmYKISGGLW 287
Cdd:cd19988 161 KKYGIEVVVEESYNRGDKDFSPQLEKIKDSGAQAIVMWGQYTEGALIAKQARELGLKQPLFGSDGLVTPKF-IELAGDAA 239
|
250 260 270
....*....|....*....|....*....|....*..
gi 1308826064 288 EGVI-TGAFSepPDSASPLMVKYREAAKrmaptERWG 323
Cdd:cd19988 240 EGAIaTTPFL--PDSDDPKVSAFVEKYK-----KRYG 269
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
57-384 |
8.38e-47 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 163.95 E-value: 8.38e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 57 TGPAAPWGS-VARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGvSAAAGLAVKDYLA 135
Cdd:cd06334 9 TGPTADVGKpYAQGVRDYLNYVNEEGGINGVKIELEECDTGYKVPRAVACYKRLKAQDGVVAILGW-GTGDTEALAPRVA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 136 QNKVIWVGPATSVKEYVFP-VNPYLFSVYPLYEDEASILTQYIVE----KLKFKKIGVFYQNDPYGKNGLEGVKQRMNKY 210
Cdd:cd06334 88 KDKIPYISASYGRSLADDGkVFPYNFFVGATYSSQARALLKYIAQewggKLKGPKVAFVYHDSPFGREPIPALKAYAKEL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 211 NMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMW-IAPTTAVIaLKTSASIGFKPQWVSSNTLSDYALMyKISGGLWEG 289
Cdd:cd06334 168 GFEVVAEQVPSPGALDATAQWLRIRRAGPDYVIIQgTGGSVAVI-IKDAKRLGLKTKFIGNIWGGDEDLI-KLAGDAAEG 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 290 VITGAFSEPPDSASPLM--VKYREAA-KRMAPTERWGLFYMAGIMFAEPFVDALKRV----GPNLSTEACLKALNETTNF 362
Cdd:cd06334 246 YVGVSPFAFGTDDPPGKeiVEEVAKKgKGDGPEEVGTVYYNRGWATAMLAVEAIRRAdkagGGTGLGNKLKAGLERLKDF 325
|
330 340
....*....|....*....|....
gi 1308826064 363 --QGVGPKVTWTASQHQGSDSVMI 384
Cdd:cd06334 326 dlGGLAPPVTFTPTDHRGGGVVRI 349
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-373 |
2.40e-46 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 162.35 E-value: 2.40e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGSVAR-GSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd06349 1 KIGVSGPLTGDNAEYGQQFKnGVELAVDEINAAGGVNGRKLELVVYDDQGDPKEAVNIAQKFVSDDKVVAVIGDFSSSCS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGPATSVKEYVfPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVKQRM 207
Cdd:cd06349 81 MAAAPIYEEAGLVQISPTASHPDFT-KGGDYVFRNSPTQAVEAPFLADYAVKKLGAKKIAIIYLNTDWGVSAADAFKKAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 208 NKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWV-SSNTLSDYALmyKISGGL 286
Cdd:cd06349 160 KALGGEIVATEAYLPGTKDFSAQITKIKNANPDAIYLAAYYNDAALIAKQARQLGWDVQIFgSSSLYSPEFI--ELAGDA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 287 WEGVITGAFSePPDSASPLMV----KYREAAKrMAPTERWGLFYMAGIMFAEpfvdALKRVGPnlSTEACLKALNETTNF 362
Cdd:cd06349 238 AEGVYLSSPF-FPESPDPEVKefvkAYKAKYG-EDPDDFAARAYDAVNILAE----AIEKAGT--DREAIRDALANIKDF 309
|
330
....*....|.
gi 1308826064 363 QGVGPKVTWTA 373
Cdd:cd06349 310 SGLTGTITFDE 320
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-378 |
1.48e-41 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 149.76 E-value: 1.48e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGP-AAPWGSVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd06341 1 KIGLIYPDTGPgAASFSAARAGAEARFGLANAAGGINGRKVEYVWCDDQSDPATNLQAARQLVEDEKVFALVGSSSAASG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 lAVKDYLAQNKVIWVGPATSVKEYVfpVNPYLFSVYPLYEDEASILTQYiVEKLKFKKIGVFYQNDPYG-KNGLEGVKQR 206
Cdd:cd06341 81 -SANDYLAQAGIPVVGGAGVSVWCF--RNMFSNFFSLGGGGSTTTYGQY-AAALGGTKAAVVVTDIPAAsQQLAQQLAAS 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 207 MNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALmYKISGGL 286
Cdd:cd06341 157 LRAAGVEVVGTAPYAAAAPDYTAVAQAAKAAGADAVVGVLDPDVAARVLKAARAQGLDLKVALSPSGYDPSV-LAAYGAA 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 287 WEGVITGAFSEPPDSASPLMVKYREAAKRMAPTERWGL--FYMAGIMFAEPFVDALKRVGPNLSTEACLKALNETTNFQG 364
Cdd:cd06341 236 LAGVSVASTFLPFEADTPAVKAYRAAMAKYAPELQDPLqqFALSGYIAADLFVRGLEAAGGCPTRAAFIKALRDVKDYDA 315
|
330
....*....|....
gi 1308826064 365 VGPKVTWTASQHQG 378
Cdd:cd06341 316 GGLLPPGDFTANPG 329
|
|
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
49-380 |
4.35e-41 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 148.46 E-value: 4.35e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd06333 1 KIGAILSLTGPAASLGiPERNAVELLVEQINAAGGINGRKLELIVYDDESDPTKAVTNARKLIEEDKVDAIIGPSTTGES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKV--IWVGPATSVkeyVFPVNPYLFSVYPLYEDEASILTQYIVEKlKFKKIGVFYQNDPYGKNGLEGVKQ 205
Cdd:cd06333 81 LAVAPIAEEAKVplISLAGAAAI---VEPVRKWVFKTPQSDSLVAEAILDYMKKK-GIKKVALLGDSDAYGQSGRAALKK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 206 RMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALMyKISGG 285
Cdd:cd06333 157 LAPEYGIEIVADERFARTDTDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLGYKGPIYQSHGAANQDFI-KLAGK 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 286 LWEGVI--TGAF---SEPPDS--ASPLMVKYREAAKrmaptERWGLFYMAGIMFAepfVDAL----KRVGPNLST--EAC 352
Cdd:cd06333 236 AAEGVIlpAGKLlvaDQLPDSdpQKKVLLEFVKAYE-----AKYGEGPSTFAGHA---YDALlllvEAIEPAGGTdrAAL 307
|
330 340
....*....|....*....|....*...
gi 1308826064 353 LKALNETTNFQGVGPKVTWTASQHQGSD 380
Cdd:cd06333 308 RDALENTKGLVGVTGVYNFSPTDHNGLD 335
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-384 |
8.25e-41 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 147.37 E-value: 8.25e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd19980 1 KIGVIAPLSGPVAALGqQVLNGAKLAVEEINAKGGVLGRKLELVVEDDKCPPAEGVAAAKKLITDDKVPAIIGAWCSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGPATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVKQRM 207
Cdd:cd19980 81 LAVMPVAERAKVPLVVEISSAPKITEGGNPYVFRLNPTNSMLAKAFAKYLADKGKPKKVAFLAENDDYGRGAAEAFKKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 208 NKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSS-NTLSDYALmyKISGGL 286
Cdd:cd19980 161 KAKGVKVVATEYFDQGQTDFTTQLTKLKAANPDAIFVVAETEDGALILKQARELGLKQQLVGTgGTTSPDLI--KLAGDA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 287 WEGVITGAFsEPPDSASPLMVKYREAAKRMAPTErwGLFYMA----GIMFAepfVDALKRVGPnLSTEACLKALNETTNF 362
Cdd:cd19980 239 AEGVYGASI-YAPTADNPANKAFVAAYKKKYGEP--PDKFAAlgydAVMVI---AEAIKKAGS-TDPEKIRAAALKKVDY 311
|
330 340
....*....|....*....|..
gi 1308826064 363 QGVGPKVTWTAsQHQGSDSVMI 384
Cdd:cd19980 312 KGPGGTIKFDE-KGQAHKNVVL 332
|
|
| PBP1_ABC_HAAT-like |
cd19986 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-331 |
3.05e-40 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380641 [Multi-domain] Cd Length: 297 Bit Score: 145.08 E-value: 3.05e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQ-YNPAQTKALVKeLVERQGIFAFVGGVSAAA 126
Cdd:cd19986 1 KIGVVAPLTGPAALNGeYQKNGAQLALEEINAAGGVLGRPLELVVEDDQgTNTGAVNAVNK-LISDDKVVAVIGPHYSTQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 127 GLAVKDYLAQNKVIWVGPATSVKEYVFPvNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVKQR 206
Cdd:cd19986 80 VLAVSPLVKEAKIPVITGGTSPKLTEQG-NPYMFRIRPSDSVSAKALAKYAVEELGAKKIAILYDNDDFGTGGADVVTAA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 207 MNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALMyKISGGL 286
Cdd:cd19986 159 LKALGLEPVAVESYNTGDKDFTAQLLKLKNSGADVIIAWGHDAEAALIARQIRQLGLDVPVIGSSSFATPTVL-LLAGEA 237
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1308826064 287 WEGV--ITGAFSEPPDSASPLMVKYREAAKRMAPtERWGLFYMAGIM 331
Cdd:cd19986 238 LEGIysVTDFVPSDPDPKVQAFVKKYKAKYGEDP-DLYSAWYYDAMY 283
|
|
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-373 |
9.38e-39 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 141.91 E-value: 9.38e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd06347 1 KIGVIGPLTGEAAAYGqPALNGAELAVDEINAAGGILGKKIELIVYDNKSDPTEAANAAQKLIDEDKVVAIIGPVTSSIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGP-ATSVKeyVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFY-QNDPYGKNGLEGVKQ 205
Cdd:cd06347 81 LAAAPIAQKAKIPMITPsATNPL--VTKGGDYIFRACFTDPFQGAALAKFAYEELGAKKAAVLYdVSSDYSKGLAKAFKE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 206 RMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALMyKISGG 285
Cdd:cd06347 159 AFEKLGGEIVAEETYTSGDTDFSAQLTKIKAANPDVIFLPGYYEEAALIIKQARELGITAPILGGDGWDSPELL-ELGGD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 286 LWEGVI-TGAFSepPDSASPLMVKYREAAKRMAPTERWGLFYMA--GIMFAepfVDALKRVGpNLSTEACLKALNETTNF 362
Cdd:cd06347 238 AVEGVYfTTHFS--PDDPSPEVQEFVKAYKAKYGEPPNAFAALGydAVMLL---ADAIKRAG-STDPEAIRDALAKTKDF 311
|
330
....*....|.
gi 1308826064 363 QGVGPKVTWTA 373
Cdd:cd06347 312 EGVTGTITFDP 322
|
|
| PBP1_ABC_ligand_binding-like |
cd19984 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-315 |
7.13e-38 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380639 [Multi-domain] Cd Length: 296 Bit Score: 138.51 E-value: 7.13e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd19984 1 KIGVILPLTGDAASYGeDMKNGIELAVEEINAAGGINGKKIELIYEDSKCDPKKAVSAANKLINVDKVKAIIGGVCSSET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGPATSVKEyVFPVNPYLFSVYPLYEDEASILTQYIVEKLKfKKIGVFYQNDPYGKNGLEGVKQRM 207
Cdd:cd19984 81 LAIAPIAEQNKVVLISPGASSPE-ITKAGDYIFRNYPSDAYQGKVLAEFAYNKLY-KKVAILYENNDYGVGLKDVFKKEF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 208 NKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDyALMYKISGGLW 287
Cdd:cd19984 159 EELGGKIVASESFEQGETDFRTQLTKIKAANPDAIFLPGYPKEGGLILKQAKELGIKAPILGSDGFED-PELLEIAGEAA 237
|
250 260
....*....|....*....|....*...
gi 1308826064 288 EGVITGAFSEPPDSASPLMVKYREAAKR 315
Cdd:cd19984 238 EGVIFTYPAFDDSSEKKQKFFFYRYKEK 265
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
78-403 |
7.01e-36 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 134.70 E-value: 7.01e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 78 NEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAGLAVKDYLAQNKVIWVGPATSVKEYVFPV-- 155
Cdd:cd06345 28 NAAGGILGRKVELVVADTQGKPEDGVAAAERLITEDKVDAIVGGFRSEVVLAAMEVAAEYKVPFIVTGAASPAITKKVkk 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 156 ----NPYLFSVYP----LYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVKQRMNKYNMKLVAEIPVEPGQKDL 227
Cdd:cd06345 108 dyekYKYVFRVGPnnsyLGATVAEFLKDLLVEKLGFKKVAILAEDAAWGRGIAEALKKLLPEAGLEVVGVERFPTGTTDF 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 228 ASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALMYKISGGLWEGVITGAFSEPPDSASPLMV 307
Cdd:cd06345 188 TPILSKIKASGADVIVTIFSGPGGILLVKQWAELGVPAPLVGINVPAQDPEFWENTGGAGEYEITLAFAAPKAKVTPKTK 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 308 KYREAAKrmaptERWGLF--YMAGIMFAEPFV--DALKRVGpNLSTEACLKALnETTNFQGVGPKVTWTASQHQGSDsvm 383
Cdd:cd06345 268 PFVDAYK-----KKYGEApnYTAYTAYDAIYIlaEAIERAG-STDPDALVKAL-EKTDYEGVRGRIKFDKKDEYPHD--- 337
|
330 340
....*....|....*....|
gi 1308826064 384 iWKCGPNGTTIKLQDWTDND 403
Cdd:cd06345 338 -VKYGPGYVTGLIFQWQDGG 356
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
55-344 |
9.66e-31 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 120.77 E-value: 9.66e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 55 PQTGPAAPWG-SVARGSDILFNLANEAGGING----RKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAGLA 129
Cdd:cd06338 7 SLTGPFAGEGkAQKRGYELWVEDVNAAGGVKGggkkRPVELVYYDDQSDPATAVRLYEKLITEDKVDLLLGPYSSGLTLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 130 VKDYLAQNKVIWVGP-ATSVKEYVFPvNPYLFSVYPLYEDEASILTQYIVEK-LKFKKIGVFYQNDPYGKNGLEGVKQRM 207
Cdd:cd06338 87 AAPVAEKYGIPMIAGgAASDSIFERG-YKYVFGVLPPASDYAKGLLDLLAELgPKPKTVAIVYEDDPFGKEVAEGAREAA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 208 NKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALMYKISGGLW 287
Cdd:cd06338 166 KKAGLEVVYDESYPPGTTDFSPLLTKVKAANPDILLVGGYPPDAITLVRQMKELGYNPKAFFLTVGPAFPAFREALGKDA 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1308826064 288 EGVITGAFSEP--PDSASPLMVKYREAAKRMAPTERW---GLFYMAGIMFAepfvDALKRVG 344
Cdd:cd06338 246 EGVLGPSQWEPslPYKVFPGAKEFVKAYKEKFGEEPSyhaAAAYAAGQVLQ----QAIEKAG 303
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-385 |
2.00e-30 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 119.65 E-value: 2.00e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGI--NGR--KIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVS 123
Cdd:cd06336 1 KIGFLGPLSGPAAAWGlPMLRGLELAADEINAAGGIkvGGKkyKVEVVSYDDKYTPAEAVAAARRLVSQDGVKFIFGPGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 124 AAAGLAVKDYLAQNKVIWVGPATSvKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGV 203
Cdd:cd06336 81 SAIAAAVQPVTERNKVLLLTAAFS-DPILGPDNPLLFRIPPTPYEYAPPFIKWLKKNGPIKTVALIAPNDATGKDWAAAF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 204 KQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIM---WIAPTTAVIalKTSASIGFKPQWVSSnTLSDYALMY 280
Cdd:cd06336 160 VAAWKAAGGEVVAEEFYDRGTTDFYPVLTKILALKPDALDLggsSPGPAGLII--KQARELGFKGPFVSE-GGAKADEIL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 281 KISGGLW-EGVITGAFSEPPDSASPLMVKYREAAKR---MAPTERWGLFYMAgimfAEPFVDALKRVGPNLSTEACLKAL 356
Cdd:cd06336 237 KEVGGEAaEGFIGVLPADDDPIASPGAKAFVERYKKkygEPPNSESALFYDA----AYILVKAMEKAGTVDDTKKIRAAL 312
|
330 340
....*....|....*....|....*....
gi 1308826064 357 NETTNFQGVGPKVTWTASQHQGSDSVMIW 385
Cdd:cd06336 313 AMLSPDETLFGKLKWGGKEIYGINHQLLV 341
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
49-333 |
2.88e-30 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 118.15 E-value: 2.88e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd19989 1 KIGVLTPLSGPYAALGeEARRGAQLAVEEINAAGGILGRPVELVVEDTEGKPATAVQKARKLVEQDGVDFLTGAVSSAVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGPATSVKEYVFP-VNPYLFSVYPLYEDEASILTQYIVEKLKfKKIGVFYQNDPYGKNGLEGVKQR 206
Cdd:cd19989 81 LAVAPKAAELKVPYLVTVAADDELTGEnCNRYTFRVNTSDRMIARALAPWLAENGG-KKWYIVYADYAWGQSSAEAFKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 207 MNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGF--KPQWVSSnTLSDYALMYKISG 284
Cdd:cd19989 160 IEELGGEVVGTLFAPLGTTDFSSYITQISDSGADGLLLALAGSDAVNFLKQAGQFGLgkKYKIVGG-ILSIEPLALPALG 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1308826064 285 GLWEGVITGAfSEPPDSASPLM---VKYREAAKRMAPTERWGLFYMAGIMFA 333
Cdd:cd19989 239 DAAEGVYGGV-RYPPTLDTPANrafVEAYEKEYGEAPDNFAGEAYEAMQALA 289
|
|
| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-302 |
5.38e-30 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 117.66 E-value: 5.38e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd06346 1 KIGALLPLTGPLASLGpPMLAAAELAVEEINAAGGVLGKKVELVVEDSQTDPTAAVDAARKLVDVEGVPAIVGAASSGVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGP-ATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLkFKKIGVFYQNDPYGKnGL-EGVKQ 205
Cdd:cd06346 81 LAVASVAVPNGVVQISPsSTSPALTTLEDKGYVFRTAPSDALQGVVLAQLAAERG-FKKVAVIYVNNDYGQ-GLaDAFKK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 206 RMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKP-QWVSSNTLSDYALMYKISG 284
Cdd:cd06346 159 AFEALGGTVTASVPYEPGQTSYRAELAQAAAGGPDALVLIGYPEDGATILREALELGLDFtPWIGTDGLKSDDLVEAAGA 238
|
250
....*....|....*....
gi 1308826064 285 GLWEGVI-TGAFSEPPDSA 302
Cdd:cd06346 239 EALEGMLgTAPGSPGSPAY 257
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
49-373 |
3.65e-29 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 116.09 E-value: 3.65e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVeRQGIFAFVGGVSAAAG 127
Cdd:cd06342 1 KIGVAGPLTGPNAALGqDIRNGAELAVDEINAKGGGLGFKIELVAQDDACDPAQAVAAAQKLV-ADGVVAVIGHYNSGAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGPATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKnGL-EGVKQR 206
Cdd:cd06342 80 IAAAPIYAEAGIPMISPSATNPKLTEQGYKNFFRVVGTDDQQGPAAADYAAKTLKAKRVAVIHDGTAYGK-GLaDAFKKA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 207 MNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALMyKISGGL 286
Cdd:cd06342 159 LKALGGTVVGREGITPGTTDFSALLTKIKAANPDAVYFGGYYPEAGLLLRQLREAGLKAPFMGGDGIVSPDFI-KAAGDA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 287 WEGVItGAFSEPPDSASPLMVKYREA--AKRMAPTERWGLF-YMAgimfAEPFVDALKRVGpNLSTEACLKALNeTTNFQ 363
Cdd:cd06342 238 AEGVY-ATTPGAPPEKLPAAKAFLKAykAKFGEPPGAYAAYaYDA----AQVLLAAIEKAG-STDRAAVAAALR-ATDFD 310
|
330
....*....|
gi 1308826064 364 GVGPKVTWTA 373
Cdd:cd06342 311 GVTGTISFDA 320
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
49-378 |
1.00e-28 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 114.97 E-value: 1.00e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGSVAR-GSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd06330 1 KIGVITPLSGAAAVYGEPARnGAELAVEEINAAGGILGRKIELVVRDDKGKPDEAVRAARELVLQEGVDFLIGTISSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWV--GPATS--VKEyvfPVNPYLFSVYP-LYEDeASILTQYIVEKLK-FKKIGVFYQNDPYGKNGLE 201
Cdd:cd06330 81 LAVAPVAEELKVLFIatDAATDrlTEE---NFNPYVFRTSPnTYMD-AVAAALYAAKKPPdVKRWAGIGPDYEYGRDSWA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 202 GVKQRMNKYN--MKLVAEIPVEPGQKDLASQMLKFKNVGAEAVI--MWIAPTTAVIalKTSASIGF--KPQWVSSNTlSD 275
Cdd:cd06330 157 AFKAALKKLKpdVEVVGELWPKLGATDYTAYITALLAAKPDGVFssLWGGDLVTFV--KQAKPYGLfdKTKVVSGLG-GG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 276 YALMYKISGGLWEGVITGAFSEPPDSASPLMVKYREAAKrmaptERWGLF--------YMAGIMFAEpfvdALKRVGpNL 347
Cdd:cd06330 234 SEVLQALGKEMPEGLIGGGRYPFGWPDTPLNKAFVEAYR-----AKYGEYptywayeaYAAVMALKA----AIEKAG-ST 303
|
330 340 350
....*....|....*....|....*....|.
gi 1308826064 348 STEACLKALnETTNFQGVGPKVTWTASQHQG 378
Cdd:cd06330 304 DTDKVIAAL-EGLTFDTPGGKITIRAEDHQA 333
|
|
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-344 |
3.44e-26 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 108.03 E-value: 3.44e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGI---NGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSA 124
Cdd:cd06340 1 KIGVLYPLSGPLALIGqEAKRGAELAVDEINAAGGIkslGGAKIELVVADTQSDPEVAASEAERLITQEGVVAIIGAYSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 125 AAGLAVKDYLAQNKVIWVGPATSVKE-------YVFPVNPYLfsvyplyEDEASILTQYIVE-----KLKFKKIGVFYQN 192
Cdd:cd06340 81 SVTLAASQVAERYGVPFVTASAVADEitergfkYVFRTAPTA-------SQFAEDAVDFLKElakkkGKKIKKVAIIYED 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 193 DPYGKNGLEGVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEaVIMWIAPTT-AVIALKTSASIGFKPQ-WVSS 270
Cdd:cd06340 154 SAFGTSVAKGLKKAAKKAGLEVVLDEPYPAGATDLSSEVLKLKAAKPD-VVFATSYTNdAILLLRTMKELGFKPKaIIGV 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1308826064 271 NTLSDYALMYKISGGLWEGVITGAFSEPP-DSASPLMVKYREAAKrmaptERWG--LFYMAGIMFAEPFV--DALKRVG 344
Cdd:cd06340 233 GGGYSDPEFLKALGKDAEGVFSVVPWSPDlAKKKPGAKEVNERYK-----KKYGedMTGHAARAYTAAWVlaDALERAG 306
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-291 |
2.72e-25 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 104.30 E-value: 2.72e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGSVAR-GSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd19981 1 KIGFFAPLTGPAAADGKSALhGAELAVEQINAAGGINGKKVELVVYDDQASPKQAVNIAQKLIEQDKVVAVVSGSYSGPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGpATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVKQRM 207
Cdd:cd19981 81 RAAAPIFQEAKVPMVS-AYAVHPDITKAGDYVFRVAFLGPVQGRAGAEYAVKDLGAKKVAILTIDNDFGKSLAAGFKEEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 208 NKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLsDYALMYKISGGLW 287
Cdd:cd19981 160 KKLGAEIVSEYAYALGDRDFRPILTKIKSANPDAIYASGYYAEAAPIVKQARELGIKVPIIGQEGY-DSPKFIEIAGSAA 238
|
....
gi 1308826064 288 EGVI 291
Cdd:cd19981 239 EGVI 242
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
49-361 |
1.64e-21 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 94.59 E-value: 1.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGsdilFNLA-NEAGG-INGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAA 125
Cdd:cd06332 1 KIGLLAPLTGPFAALGeDMVRG----FELAlEEVGGeVAGRKVELVVEDDAGDPDTAVTKARKLVEQDKVDVLIGPLSGD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 126 AGLAVKDYLAQNKVIWVGPATSVKEYV-FPVNPYLFSVYPlyeDEASI---LTQYIVEKLKFKKIGVFYQNDPYGKNGLE 201
Cdd:cd06332 77 EGLAVAPYAKEPGVPFINPVAGADDLTqRAKAPNFFRTSF---TGSQWsapLGDYAYKELGYKKVATIGSDYAFGYEQAA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 202 GVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNvGAEAVIMWIAPTTAVIALKTSASIGFK---PQWVSSNTLSDYAL 278
Cdd:cd06332 154 GFKRGFEAAGGEVVQEIWVPLGTTDFSPYIAQIPS-ADDAVFAFLGGADAVRFLKQYREFGLKdkiPLIGGGTTVDESVL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 279 --MykisGGLWEGVITgAFSEPPDSASPLMVKYREAAKRMAPTERwGLFYMAGIMFAEPFVDALKRVGPNLSTEACL-KA 355
Cdd:cd06332 233 paM----GDAALGIIS-ASHYAEGLDNPENKKFVAAYKKKFGKLP-SLYAAGGYDGAQAILEALEAVGGDVSDKQALaAA 306
|
....*.
gi 1308826064 356 LNETTN 361
Cdd:cd06332 307 LRKVKF 312
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
49-292 |
1.78e-21 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 94.21 E-value: 1.78e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd06331 1 KIGLLTPLSGPASVYGrAIANGAELAVEEINAAGGVLGRPVELVVEDDASDPATAVAAARRLIQQDKVDAIVGPITSATR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIwvgpatsvkeYVFPV-------NPYLFSVYPLYEDEASILTQYIVEKLKfKKIGVFYQNDPYGKNGL 200
Cdd:cd06331 81 NAVAPVAERAKVP----------LLYPTfyeggecSPYLFCFGEVPNQQLDPLIPWLMEEYG-KKFYLIGSDYVWPRTMN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 201 EGVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSDYALMY 280
Cdd:cd06331 150 DAARRVIEAHGGEVVGEEYLPLGTTDFSSVIEKIKASGADVVLSTLVGADAVTFLKQFAAAGLRRKVRIAALLFDENTLA 229
|
250
....*....|..
gi 1308826064 281 KISGGLWEGVIT 292
Cdd:cd06331 230 GLGAEAAEGIYS 241
|
|
| PBP1_ABC_ligand_binding-like |
cd19982 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-266 |
6.91e-21 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 91.96 E-value: 6.91e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGSVARGSdilFNLA----NEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSA 124
Cdd:cd19982 1 KIGAILSLTGPFAPFGEMFKNG---YEMAleeiNAAGGIKGKKLELVIEDDQSKPQTALAAAEKLVSQDKVPLIVGGYSS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 125 AAGLAVKDYLAQNKVIWVGPATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVK 204
Cdd:cd19982 78 GITLPVAAVAERQKIPLLVPTAADDDITKPGYKYVFRLNPPASIYAKALFDFFKELVKPKTIAILYENTAFGTSVAKAAR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1308826064 205 QRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQ 266
Cdd:cd19982 158 RFAKKRGIEVVADESYDKGATDFKPLLNKVKAANPDVVYMVSYLNDAILLMRQAKELGLNPK 219
|
|
| PBP1_ABC_HAAT-like |
cd19983 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-254 |
1.25e-20 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380638 [Multi-domain] Cd Length: 303 Bit Score: 91.49 E-value: 1.25e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGSVARGSDIL-FNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVErQGIFAFVGGVSAAAG 127
Cdd:cd19983 1 RIGFVGGLTGRYSDLGVQGRNGAQLaVEEINAAGGINGRPVELIIRDDQQDPEAAKAADRELIA-GGVVAIIGHMTSAMT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGPATSVKEYVfPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQ--NDPYGKNGLEGVKQ 205
Cdd:cd19983 80 VAVLPVINEAKVLMISPTVSTPELS-GKDDYFFRVTPTTRESAQALARYAYNRGGLRRVAVIYDlsNRAYSESWLDNFRS 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1308826064 206 RMNKYNMKLVAEIPVEPGQ----KDLASQMLKFKnvgAEAVIMwIAPT--TAVIA 254
Cdd:cd19983 159 EFEALGGRIVAEIPFSSGAdvdfSDLARRLLASK---PDGLLL-VASAvdTAMLA 209
|
|
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-373 |
2.07e-20 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 91.53 E-value: 2.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd06348 1 KIGVALSLTGPGALYGqSQKNGAQLAVEEINAAGGVGGVKIELIVEDTAGDPEQAINAFQKLINQDKVLAILGPTLSSEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKVIWVGPaTSVKEYVFPVNPYLFSVyPLYEDEASILT-QYIVEKLKFKKIGVFY-QNDPYGKNGLEGVKQ 205
Cdd:cd06348 81 FAADPIAQQAKVPVVGI-SNTAPGITDIGPYIFRN-SLPEDKVIPPTvKAAKKKYGIKKVAVLYdQDDAFTVSGTKVFPA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 206 RMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIM-WIAPTTAVIaLKTSASIGFKPQWVSSNTLSDYALMyKISG 284
Cdd:cd06348 159 ALKKNGVEVLDTETFQTGDTDFSAQLTKIKALNPDAIVIsALAQEGALI-VKQARELGLKGPIVGGNGFNSPDLI-KLAG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 285 GLWEGVITG-AFSepPDSASP----LMVKYREAAKRmAPTERWGLFYmAGIMFaepFVDALKRVGPNLSTEACLKALN-- 357
Cdd:cd06348 237 KAAEGVIVGsAWS--PDNPDPknqaFVAAYKEKYGK-EPDQFAAQAY-DAAYI---LAEAIKKAGSTTDRADLRDALAri 309
|
330
....*....|....*..
gi 1308826064 358 -ETTNFQGVGPKVTWTA 373
Cdd:cd06348 310 lIAKDFEGPLGPFSFDA 326
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
49-377 |
3.47e-20 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 90.82 E-value: 3.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGsdilFNLA-----NEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGV 122
Cdd:cd06328 1 KIGVITSLTGPLAAYGkQTERG----FELGleyatDGTMEVDGRKIEVIVKDDQGDPDTAKAAATELIGDDGVDILVGTV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 123 SAAAGLAVKDYLAQNKVIW-VGPATS---VKEYvfpVNPYLFSVYPLYEDEASILTQYIVEkLKFKKIGVFYQNDPYGKN 198
Cdd:cd06328 77 SSAVALALAPVAEQNKKILiVGPAAAdsiTGEN---WNKYTFRTSRNSWQDAIAGAKALAD-PLGKSVAFLAQDYAFGQD 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 199 GLEGVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVSSNTLSD--- 275
Cdd:cd06328 153 GVAAFKKALEAKGGKIVGEELVPVTTTDFTPYLQRILDAKPDVLFVAWAGTGALTLWQQLADQGVLDDIKVVTGGPDiat 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 276 YALMYKISGGLwEGVITGAFSEPPDSASPLMVKYREAAKRMAPTerwgLFYMAGIMFAEPFVDALKRVGPNLSTEACLKA 355
Cdd:cd06328 233 LAALGDALPGI-EGLTYYYYGLPKNPVNDWLVKAHKERYNAPPD----LFTAGGFAAAQAVVRALEKAGGDTDVEKLIAA 307
|
330 340
....*....|....*....|..
gi 1308826064 356 LnETTNFQGVGPKVTWTASQHQ 377
Cdd:cd06328 308 L-EGLTFETPKGKMTIRAEDHQ 328
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
78-269 |
1.52e-19 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 89.21 E-value: 1.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 78 NEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAGLAVKDYLAQNKVIWVGP---ATSVKEYVFP 154
Cdd:cd19979 31 NAAGGLLGRKLELVAKDHRGNPARGVDNLREFAADPDVLAVFGGLHSPVLLAELDFIHELKIPYLVPwaaATPITRNGYS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 155 VNpYLF--SVYPLYEDEAsiLTQYIVEKlKFKKIGVFYQNDPYGKNGLEGVKQRMNKYNMKLVAEIPVEPGQKDLASQML 232
Cdd:cd19979 111 PN-YIFrlSVDDSLAGPF--LVEYALKK-GCKRPALLLENTGWGRSNLKAMTKALAKKGLQPVGVEWFNWGDTDAKPQLR 186
|
170 180 190
....*....|....*....|....*....|....*..
gi 1308826064 233 KFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVS 269
Cdd:cd19979 187 ALKAAGADAILLVANAPEGAAIVKALAALPERLPIIS 223
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
49-356 |
4.95e-19 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 87.74 E-value: 4.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGS-VARGsdilFNLA-NEAGG-INGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAA 125
Cdd:cd06360 1 KIGVLLPLTGPLAVNGEdVRDG----FELYfDEIGNqVAGRKIELIVEDDEGKPDVGLTKARKLVERDKVHVLAGIVSSA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 126 AGLAVKDYLAQNKVIWVGPATSVKEYVFPV-NPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEGVK 204
Cdd:cd06360 77 VAYAVRDYVVEQKIPLVISNAGAAPLTQELaSPYIFRTSFSNGQYDAPFGQYAYEKLGYRRIAVMASDYAAGHEQAGAFA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 205 QRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQW--VSSNTLSDYALMYKI 282
Cdd:cd06360 157 RTFKQAGGKVVQEIYPPLGTADFAPYLARIQQDAADAVWAFFAGADAIRFVKQYDEYGLKGKLplVGIGGLVDDAILPEQ 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 283 sGGLWEGVITGA-FSEPPDSA-SPLMVK-YREAAKRmAPT--ERWGlfYMAGIMFAEpfvdALKRVGPNLS-TEACLKAL 356
Cdd:cd06360 237 -GDAALGIVSYLhYSAALDTPeNKAFVQaYRKKYGR-DPGlyAEGG--YVAARAIAE----ALEAVKGNVEdKEAFLEAL 308
|
|
| PBP1_ABC_HAAT-like |
cd19985 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-231 |
6.24e-18 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380640 [Multi-domain] Cd Length: 321 Bit Score: 83.86 E-value: 6.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIfAFVG----GVS 123
Cdd:cd19985 1 HIAVVGPMSGKSASKGkSMLRGAELYIDQINAAGGINGKKVKLDVFDDQNDPDAARKAAQIIVSDKAL-AVIGhyysSAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 124 AAAGlavKDYlAQNKVIWVGP-ATSVKeyVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFKKIGVFYQNDPYGKNGLEG 202
Cdd:cd19985 80 IAAG---KIY-KKAGIPAITPsATADA--VTRDNPWYFRVIFNDSLQGRFLANYAKKVLKKDKVSIIYEEDSYGKSLASV 153
|
170 180
....*....|....*....|....*....
gi 1308826064 203 VKQRMNKYNMKLVAEIPVEPGQKDLASQM 231
Cdd:cd19985 154 FEATARALGLKVLKKWSFDTDSSQLDQNL 182
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
49-365 |
1.65e-15 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 76.91 E-value: 1.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGSVARGSdilFNLA--NEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAA 126
Cdd:cd06359 1 KIGFITTLSGPAAVLGQDMRDG---FNLAleQLGGKLGGLPVEVVVEDDQLKPDVAKQAAERLIERDKVDFVTGIIFSNV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 127 GLAVKDYLAQNKVIWVGPATSVKEYVFP-VNPYLFSVYPLYEDEASILTQYIVEKlKFKKIGVFYQNDPYGKNGLEGVKQ 205
Cdd:cd06359 78 MLAVVKPVVDSKVFYISANAGPSDLAGKgCNPNFFVTSWQNDQLHEAAGKYANDK-GYKRVYLLAPNYQAGKDALAGFKR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 206 rmnKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQ--WVSSNTLSDyALMYKIS 283
Cdd:cd06359 157 ---TYKGEVVGEIYTPLGQLDFSAELAQIRAAKPDAVFAFYPGGMGVNFVKQYAQAGLKKKipLYTVGTLDD-EDLLPAM 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 284 GGLWEGVITGAFSEpPDSASP----LMVKYREAAKRMaPTERWGLFYMAGIMFAEpfvdALKRVGPNLSTEACLKALNET 359
Cdd:cd06359 233 GDAALGVLSVSQWS-PDLDNPenkrFVAAFRKKYGRP-PSNYAAQGYDAALLIDA----AVKAVGGDLSDKDALRAALRK 306
|
....*.
gi 1308826064 360 TNFQGV 365
Cdd:cd06359 307 ADFKSV 312
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
49-372 |
2.22e-15 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 76.89 E-value: 2.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWG-SVARGsdilFNLA-NEAGG-INGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAA 125
Cdd:cd20014 1 KIGLLLPYSGVYAALGeDIRNG----FQLYlDEHGGkLGGRPIELVKEDDEADPDVALQKARKLIEQDKVDVLVGPVSSG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 126 AGLAVKDYLAQNKVIWVGPATSVKE--------YVFPVNpylFSVYPLyedeASILTQYIVEKLKfKKIGVFYQNDPYGK 197
Cdd:cd20014 77 VALAIRDVVEQAKVPLIVANAGANAltraacspYIFRTS---FSNWQL----GYALGKYAAENVG-KTVVTIASDYAAGR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 198 NGLEGVKQRMNKYNMKLVAEIPVEPGQ-KDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFK-------PQWV- 268
Cdd:cd20014 149 EVVAGFKEGFEAAGGKVVGEIWTPLGTtTDFSPYLTQIAASGPDAVYAFFAGADAVRFVKQYAEFGLKgkiplygPGFLt 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 269 SSNTLSdyALmykisGGLWEGVITGAFSEP--PDSASPLMVK-YREAAKRMApterwGLFYMAGIMFAEPFVDALKRVGP 345
Cdd:cd20014 229 DEDVLP--AL-----GEAAEGIITVLHYAPtlDNPANRAFVAaYQAKYGRLP-----DVYAVQGYDAAQVIDAALEAVGG 296
|
330 340
....*....|....*....|....*..
gi 1308826064 346 NLSTEACLKALNETTNFqgVGPKVTWT 372
Cdd:cd20014 297 DTSDKDILAAALELGSI--DSPRGPFR 321
|
|
| PBP1_SBP-like |
cd06329 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
55-377 |
4.94e-15 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380552 [Multi-domain] Cd Length: 343 Bit Score: 75.77 E-value: 4.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 55 PQTGPAAPWG-SVARGSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKALVKELVErQGIFAFVGGVSAAAGLA---- 129
Cdd:cd06329 7 PLSGPFASVGeIYLKGLQFAIEEINAGGGLLGRKIELVPFDNKGSPQEALIQLKKAID-QGIRFVLQGNSSAVAGAlida 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 130 VKDYLAQN---KVIWV-----GPATSVKEYvfpvNPYLFSVYPlyedEASI----LTQYIVEKLKFKKIGVFYQNDPYGK 197
Cdd:cd06329 86 IEKHNQRNpdkRVLFLnygaeAPELTGAKC----SFWHFRFDA----NADMkmaaLADYMKKDGSIKKVYLINQDYSFGR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 198 NGLEGVKQRMNKY--NMKLVAEIPVEPGQ-KDLASQMLKFKNVGAEAVIM--WIAPTTAVIalKTSASIGFKPQWVSSNt 272
Cdd:cd06329 158 DVAAAAKKNLKKKrpDIEIVGEDLHPLGKvKDFSPYIAKIKASGADTVITgnWGNDLTLLM--KAARDSGLKAPFYTYY- 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 273 LSDYALMYKIsGGLWEGVITGAFSEPPDSASPLMVKYREAakRMAPTERWGLFYMAGIMFA-EPFVDALKRVGPNlSTEA 351
Cdd:cd06329 235 ADGPGAPAAI-GEAGVGRLVAVAYWHPNPKTPELEKFAEA--FRAKYGRYPDFNIGRTYMGvEMLAAAIKKAGST-DPEK 310
|
330 340
....*....|....*....|....*.
gi 1308826064 352 CLKALnETTNFQGVGPKVTWTASQHQ 377
Cdd:cd06329 311 VAKAL-EGLSFDTPGGPVTMRADDHQ 335
|
|
| PBP1_SBP-like |
cd19987 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
49-387 |
8.77e-14 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380642 [Multi-domain] Cd Length: 353 Bit Score: 71.98 E-value: 8.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGS-VARGSDILFNLANEAG------------GINGRKIKYFYRDDQYNPAQTKALVKELVERQGI 115
Cdd:cd19987 1 TIGLNVPLSGPYAPQGEdQRRGFELAVDHLNNGGglvdkdsrlsgdGILGKKVELVTADTETKADTAVDNAKRLIEQDGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 116 FAFVGGVSAAAGLAVKDYLAQNKVIWVG-----PATSVKEyvfpVNPYLFSVYPLYEDEASILTQYIVEKL-KFKKIGVF 189
Cdd:cd19987 81 VMITGGSSSAVAVAAQKLAQKEGVLYFAglshsNDTTGKD----CHRYGFRECFNAHMSAKALAPYLVEKFgKDRKYFYL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 190 YQNDPYGKNGLEGVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQW-- 267
Cdd:cd19987 157 TADYTWGHSTEQSMREYTEAHGWKTVGNPATPLGETDFSAALLNAADSGADVLVLVLFGRDMVNALKQAKQFGLLKKMdi 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 268 -VSSNTlsdyALMYKISGG-LWEGVITGAFSEP--PDSASPLMVKYREAAKRMAPTERWG--LFYMAGIMFAepfvDALK 341
Cdd:cd19987 237 vVPLLT----AFMAESVGPeIMEGVLGTVNWHWslPDDYSYAFGKAEAFEKEYGAYPSQAaaSAYVQVLQYA----AAVE 308
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1308826064 342 RVGpNLSTEACLKALNETTNFQGVGPkVTWTASQHQGSDSVMIWKC 387
Cdd:cd19987 309 RAG-SFDPPAVIRALEGHEYTLLKGE-QYWRACDHQSVRPVYVVRG 352
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
60-312 |
8.88e-12 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 65.71 E-value: 8.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 60 AAPWGSVARGSDIL--FNLA----NEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAGLAVKDY 133
Cdd:cd06344 5 GVAWPFAPDGDLFLegVELAveeiNAAGGVLGRKIRLVEYDDEASVDKGLAIAQRFADNPDVVAVIGHRSSYVAIPASII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 134 LAQNKVIWVGPATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEkLKFKKIGVFYQNDPYGKNGLEGVKQRMNKYNMK 213
Cdd:cd06344 85 YERAGLLMLSPGATAPKLTQHGFKYIFRNIPSDEDIARQLARYAAR-QGYKRIVIYYDDDSYGKGLANAFEEEARELGIT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 214 LVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIA--PTTAVIaLKTSASIGFKPQWVSSNTLSDYALMyKISGGLWEGVI 291
Cdd:cd06344 164 IVDRRSYSSDEEDFRRLLSKWKALDFFDAIFLAGsmPEGAEF-IKQARELGIKVPIIGGDGLDSPELI-EIAGKAAEGVV 241
|
250 260
....*....|....*....|.
gi 1308826064 292 TGAFSEPPDsASPLMVKYREA 312
Cdd:cd06344 242 VATVFDPDD-PRPEVRAFVEA 261
|
|
| PRK15404 |
PRK15404 |
high-affinity branched-chain amino acid ABC transporter substrate-binding protein; |
26-242 |
1.18e-11 |
|
high-affinity branched-chain amino acid ABC transporter substrate-binding protein;
Pssm-ID: 237959 [Multi-domain] Cd Length: 369 Bit Score: 65.81 E-value: 1.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 26 VMMSVFVLTTVSYSAPGfddKEIRIGQWGPQTGPAAPWGSVAR-GSDILFNLANEAGGINGRKIKYFYRDDQYNPAQTKA 104
Cdd:PRK15404 7 TLLAGCIALALSHAALA---DDIKIAIVGPMSGPVAQYGDMEFtGARQAIEDINAKGGIKGDKLEGVEYDDACDPKQAVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 105 LVKELVErQGIFAFVGGVSAAAGLAVKDYLAQNKVIWVGPATSVKEYVFPVNPYLFSVYPLYEDEASILTQYIVEKLKFK 184
Cdd:PRK15404 84 VANKVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLIFRTIGLDSDQGPTAAKYILEKVKPK 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1308826064 185 KIGVFYQNDPYGKNGLEGVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAV 242
Cdd:PRK15404 163 RIAVLHDKQQYGEGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFV 220
|
|
| PBP1_ABC_ligand_binding-like |
cd06337 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-378 |
1.58e-10 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380560 [Multi-domain] Cd Length: 354 Bit Score: 61.93 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGSVARGSDILFNLANEAGGI--NGRK--IKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSA 124
Cdd:cd06337 1 KIGRVSPLTGPLAAFGEADPWVLEQIREAFADGGIkvGGKKypVEIVVRDSQSDPNRAGEAARDLILRDKVDLMLASGTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 125 AAGLAVKDYLAQNKViwvgPATSVkeyVFPVNPYLFSV-----------YPLYEDEASILTQYI--VEKLKF-KKIGVFY 190
Cdd:cd06337 81 DTVNPVADQCEANGV----PCIST---DAPWQAWFFGRggdpakgfkwtFHFFWGLEDIAANFLgmWDQVPTnKVVGLLW 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 191 QNDPYGKNGLEGVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIGFKPQWVss 270
Cdd:cd06337 154 PNDPDGTAFADAFLGLPAAAGYTLVDPGRFPPGTDDFSSIINAFKKAGVEIVTGVMIPPDFATFWRQAAQQGFKPKVV-- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 271 nTLSDyALMY----KISGGLWEGVITGAFSEP--P-------DSASPLMVKYREAAKR--MAPTErwglFYMAgimFAEP 335
Cdd:cd06337 232 -TIGK-ALLFpsavAALGDLGDGLSTEVWWSPahPfkssltgQTAAELADAYEKATGKqwTQPLG----YAHA---LFEV 302
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1308826064 336 FVDALKRVGpNLSTEACLKALNETTNFQGVGPkVTWTASQHQG 378
Cdd:cd06337 303 AVDALKRAG-SPDDEAVRAALADTDLDTIVGP-VDFTSGPVPN 343
|
|
| PBP1_SBP-like |
cd20378 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
55-147 |
1.30e-09 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380668 [Multi-domain] Cd Length: 357 Bit Score: 59.28 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 55 PQTGPAAPWGSVA-RGSdilfNLA-NEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAGLAVKD 132
Cdd:cd20378 7 SMSGAFAAAGKLAdRGM----RLAvEEYGGALGRPLKYITRDTEGKPGTGVRKVQEAIAQDGARFFIGGTLSSVALAVSE 82
|
90
....*....|....*
gi 1308826064 133 YLAQNKVIWVGPATS 147
Cdd:cd20378 83 EAEKAGGVYITSGGA 97
|
|
| PBP1_SBP-like |
cd06327 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
49-262 |
1.91e-09 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative, gram-positive bacteria, and archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380550 [Multi-domain] Cd Length: 336 Bit Score: 58.74 E-value: 1.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAApwGSVARGSDILFNLA-NEAGG-INGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAA 126
Cdd:cd06327 1 RIGVLTDLSGVYA--DLSGPGSVEAAKMAvEDFGGkVLGRPIEVVSADHQNKPDVASAIAREWYDRDGVDAIVDVPNSAV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 127 GLAVKDYLAQNK--VIWVGPATSV--KEYvfpVNPYLFS-VYPLYEdEASILTQYIVEKLKfKKIGVFYQNDPYGKNGLE 201
Cdd:cd06327 79 ALAVQKLAKEKKkiAIVTGAGSSDltGKA---CSPYGVHwAYDTYA-LARGTVKALVKQGG-KSWFFITADYAFGHSLEA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1308826064 202 GVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWIAPTTAVIALKTSASIG 262
Cdd:cd06327 154 DATAAVKAAGGKVVGSVRHPLGTTDFSSFLLQAQASGADVIALANAGADLVNAVKQAREFG 214
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
49-264 |
4.79e-08 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 54.57 E-value: 4.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGSVARGSDILFnLANEAGGINGRKIKYFYRDDQ-YNPAQTKALVKELVERQGIFAFVGGVSAAAG 127
Cdd:cd20013 1 KVGVIGPFSGPFADYGKQFDRGIDLY-LKLHGDKVGGRKVEVIYRDDGgPNPAVAKRLAQELIVRDKVQILIGFGFTPNA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 128 LAVKDYLAQNKV--IWVGPATSvkeYVFPVNPYL----FSVYPLyedeASILTQYIVEKLKFKKIGVFYQNDPyGKNGLE 201
Cdd:cd20013 80 LAVAPVATEAKTptVIMNAATS---SITRKSPYFvrtsFTMWQV----AYPMGKWAAKNGIKKAYTAVADYAP-GHDAET 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1308826064 202 GVKQRMNKYNMKLVAEIPVEPGQKDLASQMLKFKNVGAEAVIMWI---APTTAViaLKTSASIGFK 264
Cdd:cd20013 152 AFKKAFEAAGGKIVGSIRVPLATPDFAPFMQRIKDAKPDAVFVFVpagAPSIGF--LKAYAERGLK 215
|
|
| PBP1_glutamate_receptors-like |
cd06269 |
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl ... |
87-251 |
1.54e-07 |
|
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as natriuretic peptide receptors (NPRs), and N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of ionotropic glutamate rece; This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type 1 family. The family C GPCRs consists of metabotropic glutamate receptor (mGluR), a calcium-sensing receptor (CaSR), gamma-aminobutyric acid receptor (GABAbR), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G).
Pssm-ID: 380493 [Multi-domain] Cd Length: 332 Bit Score: 52.80 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 87 KIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAGLAVKDYLAQNKVIWVG-----PATSVK-EYvfpvnPYLF 160
Cdd:cd06269 40 TLGLAIRDSECNPTQALLSACDLLAAAKVVAILGPGCSASAAPVANLARHWDIPVLSygataPGLSDKsRY-----AYFL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 161 SVYPLYEDEASILTQyIVEKLKFKKIGVFYQNDPYGKNGLEGVKQRMNKYNMKLVAEIPVEPG-QKDLASQMLKFKNVGA 239
Cdd:cd06269 115 RTVPPDSKQADAMLA-LVRRLGWNKVVLIYSDDEYGEFGLEGLEELFQEKGGLITSRQSFDENkDDDLTKLLRNLRDTEA 193
|
170
....*....|..
gi 1308826064 240 EAVIMWIAPTTA 251
Cdd:cd06269 194 RVIILLASPDTA 205
|
|
| PBP1_NHase |
cd06358 |
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively ... |
49-167 |
3.88e-06 |
|
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides; This group includes the type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified into two subgroups: ferric NHases and cobalt NHases.
Pssm-ID: 380581 [Multi-domain] Cd Length: 333 Bit Score: 48.36 E-value: 3.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308826064 49 RIGQWGPQTGPAAPWGSVARGSDILfnlA----NEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSA 124
Cdd:cd06358 1 RIGLLIPLSGPAGLWGPSCEACAEL---AaaeiNAAGGILGREVELVLIDAGGPPAEVAAAARRLVDDGAVDAIVGMHTS 77
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1308826064 125 AAGLAVKDYLAqNKViwvgpatsvkeyvfpvnPYLFSvyPLYE 167
Cdd:cd06358 78 AVRQALANAVG-GRV-----------------PYVYT--PLYE 100
|
|
| PBP1_AmiC |
cd06357 |
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding ... |
78-130 |
2.12e-05 |
|
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family; This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Pssm-ID: 380580 [Multi-domain] Cd Length: 357 Bit Score: 46.03 E-value: 2.12e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1308826064 78 NEAGGINGRKIKYFYRDDQYNPAQTKALVKELVERQGIFAFVGGVSAAAGLAV 130
Cdd:cd06357 31 NAAGGVNGRPIEPVVYDPASDPDRYRELAERLLLEDGVRHIFGCYTSASRKAV 83
|
|
| |
