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Conserved domains on  [gi|1308963968|gb|PKO73945|]
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cytochrome C [Betaproteobacteria bacterium HGW-Betaproteobacteria-17]

Protein Classification

CytC552 family protein( domain architecture ID 10008682)

CytC552 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
16-102 3.10e-39

Cytochrome c551/c552 [Energy production and conversion];


:

Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 125.40  E-value: 3.10e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308963968  16 SGAASADQALAQKNACMSCHGVDKKIVGPAFKEVAAKYAGDKTAHEMLVAKVKTGGKGVWGPVPMPPSPQVKPEDASKII 95
Cdd:COG4654     1 AADAAAGKALAKKSGCLACHAVDKKLVGPSYKDVAKKYKGKADAVAKLAKKIKKGGSGVWGDVPMPPHPQLSDAEAKALV 80


                  ....*..
gi 1308963968  96 DWVLSLK 102
Cdd:COG4654    81 KWILSLK 87
 
Name Accession Description Interval E-value
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
16-102 3.10e-39

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 125.40  E-value: 3.10e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308963968  16 SGAASADQALAQKNACMSCHGVDKKIVGPAFKEVAAKYAGDKTAHEMLVAKVKTGGKGVWGPVPMPPSPQVKPEDASKII 95
Cdd:COG4654     1 AADAAAGKALAKKSGCLACHAVDKKLVGPSYKDVAKKYKGKADAVAKLAKKIKKGGSGVWGDVPMPPHPQLSDAEAKALV 80


                  ....*..
gi 1308963968  96 DWVLSLK 102
Cdd:COG4654    81 KWILSLK 87
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 23-102 8.76e-08

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 45.61  E-value: 8.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308963968  23 QALAQKNaCMSCHGVDKK---IVGPAFKEVAAKYAGDKTAHEMLVAKVKTGGKGVWG----PVPMPPSPQVKPEDASKII 95
Cdd:pfam00034   4 KKLFAAN-CAACHGVNGEgagAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAggppGTGMPAFDGLTDEEIADLV 82


                  ....*..
gi 1308963968  96 DWVLSLK 102
Cdd:pfam00034  83 AYLLSLS 89
 
Name Accession Description Interval E-value
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
16-102 3.10e-39

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 125.40  E-value: 3.10e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308963968  16 SGAASADQALAQKNACMSCHGVDKKIVGPAFKEVAAKYAGDKTAHEMLVAKVKTGGKGVWGPVPMPPSPQVKPEDASKII 95
Cdd:COG4654     1 AADAAAGKALAKKSGCLACHAVDKKLVGPSYKDVAKKYKGKADAVAKLAKKIKKGGSGVWGDVPMPPHPQLSDAEAKALV 80


                  ....*..
gi 1308963968  96 DWVLSLK 102
Cdd:COG4654    81 KWILSLK 87
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 23-102 8.76e-08

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 45.61  E-value: 8.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308963968  23 QALAQKNaCMSCHGVDKK---IVGPAFKEVAAKYAGDKTAHEMLVAKVKTGGKGVWG----PVPMPPSPQVKPEDASKII 95
Cdd:pfam00034   4 KKLFAAN-CAACHGVNGEgagAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAggppGTGMPAFDGLTDEEIADLV 82


                  ....*..
gi 1308963968  96 DWVLSLK 102
Cdd:pfam00034  83 AYLLSLS 89
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
28-98 2.47e-04

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 36.23  E-value: 2.47e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1308963968  28 KNACMSCHGVDKkiVGPAFkevaakyAGDKTAHEMLVAKVKTGGKGvwgpvpMPP-SPQVKPEDASKIIDWV 98
Cdd:pfam13442  11 AANCASCHGTGG--AGPSL-------AGRALPPEALVDIIRNGKGA------MPAfGGDLSDEELEALAAYL 67
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
3-102 9.92e-04

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 36.47  E-value: 9.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1308963968   3 LMMTAASAALLLMSGAASADQALAQKNaCMSCHGVDKKIVGPAFKEVAAKYAGDKTAhEMLVAKVKTGGKGvwgpVPMPP 82
Cdd:COG2010    73 LLAAAAADAPAADAEALARGKALYEQN-CAACHGADGKGGLGAAPNLTDDALYGGDP-EALVETILNGRPG----GAMPA 146

                          90       100
                  ....*....|....*....|.
gi 1308963968  83 -SPQVKPEDASKIIDWVLSLK 102
Cdd:COG2010   147 fGGQLSDEEIAALAAYLRSLS 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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