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Conserved domains on  [gi|1309098561|gb|PKP75536|]
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flagellar hook-associated protein FlgK [Alphaproteobacteria bacterium HGW-Alphaproteobacteria-6]

Protein Classification

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
flgK super family cl35588
flagellar hook-associated protein FlgK; Validated
 1-481 4.34e-148

flagellar hook-associated protein FlgK; Validated


The actual alignment was detected with superfamily member PRK07521:

Pssm-ID: 236038 [Multi-domain]  Cd Length: 483  Bit Score: 431.67  E-value: 4.34e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   1 MSLSTSLANALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSPQSlggngAGVRVDSVTRAINQSVLNDRRLADAEAG 80
Cdd:PRK07521    1 MSLSSALNTAQSGLTATSRQTSVVSRNIANAGTPGYSRREASLVSGP-----AGGQVVGISRAQDPALLAQRLLATSAAA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  81 NRQLRSDFLAGIEARIGRPGEPASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMDADAA 160
Cdd:PRK07521   76 AQDTLADGLERLASTVGDNDYEGSPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAE 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 161 IAREVGTLNETLAQIDRLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLDGNPAVI 240
Cdd:PRK07521  156 IADSVDTLNDLLAQFEDANNAVVSGTATGRDASDALDQRDKLLKQISQIVGVTTVTRDNNDMALYTDGGVTLFETTPRTV 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 241 GFAPVGVITPDMTLASgalsgLTINGQPV-ASGDGGVLGGGTLGARFAIRDTLAPAAQDQLDAFARDLIGRFADPalDPT 319
Cdd:PRK07521  236 TFTPTATYTAGTTGNA-----VYIDGVPLtGGSGVMPLAGGSLAALLQLRDEIAPTYQAQLDEIARGLITRFAES--DPT 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 320 LAPGQPGLFTDAGGAFDP-LLEVGLAGRIRINAAVDPARGGALWRLRDG-------IGAPAPGEVGNATLLGALADRMAE 391
Cdd:PRK07521  309 GAAGDPGLFTDSGAPADPaAGEAGLAGRISVNAAVDPSQGGDPWLLRDGgingaayLGANTTGAAGFSTRLNALVDALSA 388

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 392 ARVPASGPFIGAAVSSSALASDILSQIAAGRQDAEARTSFATARQEALTQ-LQLQDGVDTDAEMQRLLMVEQAFSANARV 470
Cdd:PRK07521  389 PRTFDSAAGLSGSSSLMDLAASSLSWLEQQRSSASSEASYASALLSRADEaLSNATGVDTDDEMALLLDLEQSYAASAKV 468

                         490
                  ....*....|.
gi 1309098561 471 IQMIDDLIQQL 481
Cdd:PRK07521  469 ISTVDEMLDSL 479
 
Name Accession Description Interval E-value
flgK PRK07521
flagellar hook-associated protein FlgK; Validated
 1-481 4.34e-148

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236038 [Multi-domain]  Cd Length: 483  Bit Score: 431.67  E-value: 4.34e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   1 MSLSTSLANALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSPQSlggngAGVRVDSVTRAINQSVLNDRRLADAEAG 80
Cdd:PRK07521    1 MSLSSALNTAQSGLTATSRQTSVVSRNIANAGTPGYSRREASLVSGP-----AGGQVVGISRAQDPALLAQRLLATSAAA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  81 NRQLRSDFLAGIEARIGRPGEPASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMDADAA 160
Cdd:PRK07521   76 AQDTLADGLERLASTVGDNDYEGSPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAE 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 161 IAREVGTLNETLAQIDRLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLDGNPAVI 240
Cdd:PRK07521  156 IADSVDTLNDLLAQFEDANNAVVSGTATGRDASDALDQRDKLLKQISQIVGVTTVTRDNNDMALYTDGGVTLFETTPRTV 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 241 GFAPVGVITPDMTLASgalsgLTINGQPV-ASGDGGVLGGGTLGARFAIRDTLAPAAQDQLDAFARDLIGRFADPalDPT 319
Cdd:PRK07521  236 TFTPTATYTAGTTGNA-----VYIDGVPLtGGSGVMPLAGGSLAALLQLRDEIAPTYQAQLDEIARGLITRFAES--DPT 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 320 LAPGQPGLFTDAGGAFDP-LLEVGLAGRIRINAAVDPARGGALWRLRDG-------IGAPAPGEVGNATLLGALADRMAE 391
Cdd:PRK07521  309 GAAGDPGLFTDSGAPADPaAGEAGLAGRISVNAAVDPSQGGDPWLLRDGgingaayLGANTTGAAGFSTRLNALVDALSA 388

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 392 ARVPASGPFIGAAVSSSALASDILSQIAAGRQDAEARTSFATARQEALTQ-LQLQDGVDTDAEMQRLLMVEQAFSANARV 470
Cdd:PRK07521  389 PRTFDSAAGLSGSSSLMDLAASSLSWLEQQRSSASSEASYASALLSRADEaLSNATGVDTDDEMALLLDLEQSYAASAKV 468

                         490
                  ....*....|.
gi 1309098561 471 IQMIDDLIQQL 481
Cdd:PRK07521  469 ISTVDEMLDSL 479
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
2-484 1.81e-100

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 309.50  E-value: 1.81e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   2 SLSTSLANALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSP-----QSLGGNGAGVRVDSVTRAINQSVLNDRRLAD 76
Cdd:COG1256     1 SLFSALNIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLSAagptaTGAGQVGTGVRVTGIRRIRDEFLDAQLRSAN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  77 AEAGNRQLRSDFLAGIEARIGRPGEpASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMD 156
Cdd:COG1256    81 SDLGYAEARADALSQLEALLGEPSD-TGLSTALDDFFNALQELASNPESSAARQAVLEAAQALADRFNSLSSQLQDLRAD 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 157 ADAAIAREVGTLNETLAQIDRLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLDGN 236
Cdd:COG1256   160 ADSQIASTVDEINSLLSQIADLNKQIVKAEAGGQDANDLLDQRDQLLDELSELVGVTVVEQDDGTVNVSTGNGQTLVDGD 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 237 -PAVIGFAPvgviTPDMtlaSGALSGLTINGQPVASGDGGVLGGGTLGARFAIRDTLAPAAQDQLDAFARDLIGRFADPA 315
Cdd:COG1256   240 tASELSFTP----SAGD---PGGLSTVTLDDSGVPSDATSSITGGSLGGLLELRDETLPEYQAQLDELARGLADAFNAVH 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 316 LDPTLAPGQPG--LFTD----AGGAFDPLLEVGlAGRIRINAAVDpargGALWRLrdGIGAPAPGEVGNATLLGALADRM 389
Cdd:COG1256   313 AQGYDLNGNPGgdLFDIdpsiTGGTLTPFDTVG-AGNISVNPAVI----GDPSLL--AAANSDGGGAGDNTNALALAALQ 385

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 390 AEARVPASgpfiGAAVSSSALASDILSQIAAGRQDAEARTSFATARQEALT-QLQLQDGVDTDAEMQRLLMVEQAFSANA 468
Cdd:COG1256   386 DAKLVFDS----GGSGTLSDYYASLVSDLGVDAQQAKTEAEAQEALLDQLEnQRQSVSGVNLDEEMANLIKFQQAYQANA 461

                         490
                  ....*....|....*.
gi 1309098561 469 RVIQMIDDLIQQLIGL 484
Cdd:COG1256   462 RVITTADEMLDTLLNI 477
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 6-311 6.65e-48

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 167.91  E-value: 6.65e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   6 SLANALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSP-----QSLGGNGAGVRVDSVTRAINQSVLNDRRLADAEAG 80
Cdd:TIGR02492   2 LLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLTAvpaggQGGKQIGTGVKVTSIRRIQDQFLDNQYRRANSSAG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  81 NRQLRSDFLAGIEARIGRPGEpASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMDADAA 160
Cdd:TIGR02492  82 YADSRASGLSKIEQIFNDLDG-SGLGTYLNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 161 IAREVGTLNETLAQIDRLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLDGnpAVI 240
Cdd:TIGR02492 161 IKSAVTEINSLLKQIASLNKEIKQVEASGQDANDLLDQRDLLLKELSQLIGISVSENENGTVNVYTGSGQVLVDG--ATV 238

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1309098561 241 GFAPVGVITPDMTLASGALSGLTINGQPVASGDGGVLGGGTLGARFAIRDTLAPAAQDQLDAFARDLIGRF 311
Cdd:TIGR02492 239 TGSSTSPLTADTTGGKVGGDGVYLPSGSSKVTISSDLQGGKLGGLLDLRDGVLPDLQSQLDQLAKTLADEF 309
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 447-484 5.24e-05

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 41.48  E-value: 5.24e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1309098561 447 GVDTDAEMQRLLMVEQAFSANARVIQMIDDLIQQLIGL 484
Cdd:pfam06429  37 NVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgK PRK07521
flagellar hook-associated protein FlgK; Validated
 1-481 4.34e-148

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236038 [Multi-domain]  Cd Length: 483  Bit Score: 431.67  E-value: 4.34e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   1 MSLSTSLANALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSPQSlggngAGVRVDSVTRAINQSVLNDRRLADAEAG 80
Cdd:PRK07521    1 MSLSSALNTAQSGLTATSRQTSVVSRNIANAGTPGYSRREASLVSGP-----AGGQVVGISRAQDPALLAQRLLATSAAA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  81 NRQLRSDFLAGIEARIGRPGEPASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMDADAA 160
Cdd:PRK07521   76 AQDTLADGLERLASTVGDNDYEGSPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAE 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 161 IAREVGTLNETLAQIDRLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLDGNPAVI 240
Cdd:PRK07521  156 IADSVDTLNDLLAQFEDANNAVVSGTATGRDASDALDQRDKLLKQISQIVGVTTVTRDNNDMALYTDGGVTLFETTPRTV 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 241 GFAPVGVITPDMTLASgalsgLTINGQPV-ASGDGGVLGGGTLGARFAIRDTLAPAAQDQLDAFARDLIGRFADPalDPT 319
Cdd:PRK07521  236 TFTPTATYTAGTTGNA-----VYIDGVPLtGGSGVMPLAGGSLAALLQLRDEIAPTYQAQLDEIARGLITRFAES--DPT 308

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 320 LAPGQPGLFTDAGGAFDP-LLEVGLAGRIRINAAVDPARGGALWRLRDG-------IGAPAPGEVGNATLLGALADRMAE 391
Cdd:PRK07521  309 GAAGDPGLFTDSGAPADPaAGEAGLAGRISVNAAVDPSQGGDPWLLRDGgingaayLGANTTGAAGFSTRLNALVDALSA 388

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 392 ARVPASGPFIGAAVSSSALASDILSQIAAGRQDAEARTSFATARQEALTQ-LQLQDGVDTDAEMQRLLMVEQAFSANARV 470
Cdd:PRK07521  389 PRTFDSAAGLSGSSSLMDLAASSLSWLEQQRSSASSEASYASALLSRADEaLSNATGVDTDDEMALLLDLEQSYAASAKV 468

                         490
                  ....*....|.
gi 1309098561 471 IQMIDDLIQQL 481
Cdd:PRK07521  469 ISTVDEMLDSL 479
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
2-484 1.81e-100

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 309.50  E-value: 1.81e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   2 SLSTSLANALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSP-----QSLGGNGAGVRVDSVTRAINQSVLNDRRLAD 76
Cdd:COG1256     1 SLFSALNIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLSAagptaTGAGQVGTGVRVTGIRRIRDEFLDAQLRSAN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  77 AEAGNRQLRSDFLAGIEARIGRPGEpASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMD 156
Cdd:COG1256    81 SDLGYAEARADALSQLEALLGEPSD-TGLSTALDDFFNALQELASNPESSAARQAVLEAAQALADRFNSLSSQLQDLRAD 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 157 ADAAIAREVGTLNETLAQIDRLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLDGN 236
Cdd:COG1256   160 ADSQIASTVDEINSLLSQIADLNKQIVKAEAGGQDANDLLDQRDQLLDELSELVGVTVVEQDDGTVNVSTGNGQTLVDGD 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 237 -PAVIGFAPvgviTPDMtlaSGALSGLTINGQPVASGDGGVLGGGTLGARFAIRDTLAPAAQDQLDAFARDLIGRFADPA 315
Cdd:COG1256   240 tASELSFTP----SAGD---PGGLSTVTLDDSGVPSDATSSITGGSLGGLLELRDETLPEYQAQLDELARGLADAFNAVH 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 316 LDPTLAPGQPG--LFTD----AGGAFDPLLEVGlAGRIRINAAVDpargGALWRLrdGIGAPAPGEVGNATLLGALADRM 389
Cdd:COG1256   313 AQGYDLNGNPGgdLFDIdpsiTGGTLTPFDTVG-AGNISVNPAVI----GDPSLL--AAANSDGGGAGDNTNALALAALQ 385

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 390 AEARVPASgpfiGAAVSSSALASDILSQIAAGRQDAEARTSFATARQEALT-QLQLQDGVDTDAEMQRLLMVEQAFSANA 468
Cdd:COG1256   386 DAKLVFDS----GGSGTLSDYYASLVSDLGVDAQQAKTEAEAQEALLDQLEnQRQSVSGVNLDEEMANLIKFQQAYQANA 461

                         490
                  ....*....|....*.
gi 1309098561 469 RVIQMIDDLIQQLIGL 484
Cdd:COG1256   462 RVITTADEMLDTLLNI 477
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 6-311 6.65e-48

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 167.91  E-value: 6.65e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   6 SLANALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSP-----QSLGGNGAGVRVDSVTRAINQSVLNDRRLADAEAG 80
Cdd:TIGR02492   2 LLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLTAvpaggQGGKQIGTGVKVTSIRRIQDQFLDNQYRRANSSAG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  81 NRQLRSDFLAGIEARIGRPGEpASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMDADAA 160
Cdd:TIGR02492  82 YADSRASGLSKIEQIFNDLDG-SGLGTYLNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 161 IAREVGTLNETLAQIDRLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLDGnpAVI 240
Cdd:TIGR02492 161 IKSAVTEINSLLKQIASLNKEIKQVEASGQDANDLLDQRDLLLKELSQLIGISVSENENGTVNVYTGSGQVLVDG--ATV 238

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1309098561 241 GFAPVGVITPDMTLASGALSGLTINGQPVASGDGGVLGGGTLGARFAIRDTLAPAAQDQLDAFARDLIGRF 311
Cdd:TIGR02492 239 TGSSTSPLTADTTGGKVGGDGVYLPSGSSKVTISSDLQGGKLGGLLDLRDGVLPDLQSQLDQLAKTLADEF 309
flgK PRK07191
flagellar hook-associated protein FlgK; Validated
 9-484 3.36e-26

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180871 [Multi-domain]  Cd Length: 456  Bit Score: 110.68  E-value: 3.36e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   9 NALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSPQSLGGN-----GAGVRVDSVTRAINQSVLNDRRLADAEAGNRQ 83
Cdd:PRK07191    6 TAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQSAIGADGQggvnaGNGVNVDGIRRLSQQYVVMQEWQANSQQGYYD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  84 LRSDFLAGIEARIGrpGEPASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLS-------RGLQQSRmd 156
Cdd:PRK07191   86 AGEQYFNALELVVG--NKSTSLATGLNNFFSALSAATQLPDSPPMRQQVIESANAMALRFNNVNnfivqqkKSIGQQR-- 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 157 adAAIAREVGTLNETLAQidrLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLDGn 236
Cdd:PRK07191  162 --DATVKQINSLTRSIAD---YNQKILKNRSDGNNISDLLDQRDLQIKKLSGLIEVRVVQQEDGTYRVSVKNGQPLVNG- 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 237 pAVIGFAPVGVITPDMTLASGALSGLTingQPVasgDGGVLGGGTLGARFAiRDTLAPaAQDQLDAFARDLIGRFAD--- 313
Cdd:PRK07191  236 -AVAAELAVDTSSVGTQKLTLHFSGAT---QGM---NMSCGGQLGGLNDYE-LTTLKP-LQDSTQEMAKTVADKFNDqlt 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 314 PALDPTLAPGQPgLFTdaggaFDPLLEVGLAGRirinAAVDPARGGAlwrlrDGIGAPApgevGNATLLGALADrMAEAR 393
Cdd:PRK07191  307 KGFDMNGAPGKP-LFT-----FNPSDPNGMLQL----SAIKPEELAL-----SGDPKPP----GDNSNLFELLE-IRSQK 366

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 394 VPASGpfIGAAVSSSALASDILSQIAAGRQDAEARTSFATARQEALTQLQLQDGVDTDAEMQRLLMVEQAFSANARVIQM 473
Cdd:PRK07191  367 TDLPG--MGNVSLGDAATALVGYIAITSNQNHSELENAENVRNQAERYWESFSGVNNDEEAMNLMEYQRAYQSNMKVIAT 444

                         490
                  ....*....|.
gi 1309098561 474 IDDLIQQLIGL 484
Cdd:PRK07191  445 GDKLFSDLLAL 455
flgK PRK07739
flagellar hook-associated protein FlgK; Validated
 1-482 1.85e-21

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236084 [Multi-domain]  Cd Length: 507  Bit Score: 97.01  E-value: 1.85e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   1 MSLSTSLANALSGLNAASRSAEVVSSNVANVMTAGYARREVNL------------SPQSLGGNGAGVRVDSVTRAINQSV 68
Cdd:PRK07739    2 MSTFMGLETARRGLFAQQAALYVTGHNIANANTPGYTRQRVNLaatppyptpgmnRPKIPGQMGTGVEAGSVERIRDQFL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  69 LNDRRLADAEAGNRQLRSDFLAGIEARIGRPGEpASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSR 148
Cdd:PRK07739   82 DIQYRRENNKLGYWETKADALSQMEDIMNEPSD-TGLNKVLDQFWNSLQELSKNPENLGARSVVRQRAQALAETFNYLSQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 149 GLQQSRMDADAAIAREVGTLNETLAQIDRLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVR-----------EVAR 217
Cdd:PRK07739  161 SLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAKVEPNGYLPNDLYDQRDLLLDELSKIVNITveynksggnalEDAE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 218 QNDQIALFTTGGAI-LLDGNPAVIGfaPVGVITPDMTLASGALSGLTINGQPVASGDGGVLGGGTLGARFAIRDT----- 291
Cdd:PRK07739  241 GTFRIDILGGNGKGtLVDGKDSTVN--ELSVNKDDVTGLVTDLSLGGTTVSWDDTGQPVNPSSGKLKGLLEMYGYmsgng 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 292 ----LAPAAQDQLDAFARDLIGRFAD---PALDPTLAPGQPgLFTDAGGAfdpllEVGLAGRIRINAAVDPArggalwrL 364
Cdd:PRK07739  319 eekgLYPEMLNDLDKLAYTFATAFNEvhkQGYGLNGSTGID-FFDGTGDS-----TKGAAKTIKVSDDILAD-------L 385

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 365 RDGIGAPAPGEVG---NATLLGALADrmaearvpASGPFIGAAVSSSALASDILSQIAAgrqDAEARTSFATARQEALTQ 441
Cdd:PRK07739  386 NNIAAASDDGELGdgsNALNLANLKD--------FKLNSGLDTTTFDDFYQSLIGNLGV---DAQEANRMAENQEVLVDQ 454

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*
gi 1309098561 442 LQLQ----DGVDTDAEMQRLLMVEQAFSANARVIQMIDDLIQQLI 482
Cdd:PRK07739  455 VDNRrqsvSGVSLDEEMTNMIKFQHAYNAAARMITAIDEMLDKII 499
flgK PRK08147
flagellar hook-associated protein FlgK; Validated
 4-238 1.59e-18

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236165 [Multi-domain]  Cd Length: 547  Bit Score: 88.19  E-value: 1.59e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   4 STSLAN-ALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSPQ--SLGGN---GAGVRVDSVTRAINQSVLNDRRLADA 77
Cdd:PRK08147    1 MSSLINtAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQAgsTLTAGgwiGNGVYVSGVQREYDAFITNQLRAAQT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  78 EAGNRQLRSDFLAGIEARIGrpGEPASLGARIDALESALIEATSRP-DSAARlQGIADAADALGDHLNDLSRGLQQSRMD 156
Cdd:PRK08147   81 QSSGLTTRYEQMSKIDNLLS--DSTNSLSTTMQDFFTSLQTLVSNAeDPAAR-QALIGKAEGLVNQFKTTDQYLRDQDKG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 157 ADAAIAREVGTLNETLAQIDRLNAEI--LTQRSSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLD 234
Cdd:PRK08147  158 VNTAIGSSVDQINNYAKQIASLNDQItrLTGVGAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQ 237


                  ....
gi 1309098561 235 GNPA 238
Cdd:PRK08147  238 GSTA 241
flgK PRK06665
flagellar hook-associated protein FlgK; Validated
 13-238 9.46e-18

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180650 [Multi-domain]  Cd Length: 627  Bit Score: 86.26  E-value: 9.46e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  13 GLNAASRSAEVVSSNVANVMTAGYARREVNLSP------------QSLGGNGAGVRVDSVTRAINQsvLNDRRLADA--E 78
Cdd:PRK06665   14 SLFAHKQALQTTGHNISNASTKGYSRQRVTMKTfdplyapslnraEKPGQIGQGVEIQSIERIRDE--LLDSRIIEEsgR 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  79 AGNRQLRSDFLAGIEARIGRPGEpASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMDAD 158
Cdd:PRK06665   92 LGYWKTKDKYLSQLEQVYNEPED-QSLRTRLDDFWDSWQDLSNYPEGLAERQVVLERAQSLGERIHDRYRSLERIRDMAN 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 159 AAIAREVGTLNETLAQIDRLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVReVARQNDQIALFTTGGAILLDGNPA 238
Cdd:PRK06665  171 DEIEITVEEINNILRNIADLNEQIVKSQAMGDNPNDLLDRRDLLVDKLSSLIDVS-IERSDPDEFMIHIGGRHLVQGNIA 249
flgK PRK06945
flagellar hook-associated protein FlgK; Validated
 4-262 5.21e-17

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235895 [Multi-domain]  Cd Length: 651  Bit Score: 83.91  E-value: 5.21e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   4 STSLAN-ALSGLNAASRSAEVVSSNVANVMTAGYARREV---NLSPQSLGGN--GAGVRVDSVTRAINQSVLNDRRLADA 77
Cdd:PRK06945    1 SSSLLNiGLSGLNAAQWGLTTTGHNISNAATPGYSRQRVvqaEAGGQYTGSGylGQGVNVVTVKRQYSQYLSAQLNNAQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  78 EAGNRQLRSDFLAGIEARIGRPGepASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMDA 157
Cdd:PRK06945   81 ASSSLSTYYSQISQLNNYLADPT--AGLSPAITSFFTGLQNVANNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 158 DAAIAREVGTLNETLAQIDRLNAEILT-QRSSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLDGN 236
Cdd:PRK06945  159 NTQLTSSVTQINSYTKQIAQLNDQIAKaESSQGQPPNDLLDQRDQLVSELSKLVGVTVVQQDDGGYNVFVGNGQPLVVGN 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1309098561 237 PA----------------VIGFAPVG--VITPDMTLASGALSGL 262
Cdd:PRK06945  239 QSyqlttvpspsdpsrltVAGYKPPGttQELPDSSLTGGTLGGL 282
flgK PRK06799
flagellar hook-associated protein FlgK; Validated
 11-235 2.29e-09

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180699 [Multi-domain]  Cd Length: 431  Bit Score: 59.13  E-value: 2.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  11 LSGLNAASRSAEVVSSNVANVMTAGYARREVNLspQSLGGN---------GAGVR---VDSVTRAINQSVLNDrRLADAE 78
Cdd:PRK06799   10 LSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNY--GSVGASggllpeqqiGYGVQtlgVDRITDEVKTKQYND-QLSQLS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  79 AGNRQlrSDFLAGIEARIGRPGePASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMDAD 158
Cdd:PRK06799   87 YYNYM--NSALSRVESMVGTTG-KNSLSSLMDGFFNAFREVAKNPEQANYYDTLISETGKFTSQLNRLAKGLDELEAQTT 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 159 AAIAREVGTLNETLAQIDRLNAEIltqRSSGRDA-TALMDQRQSLVDRVAEIVPVrEVARQ--NDQIALFTTGGAILLDG 235
Cdd:PRK06799  164 EDIEAHVNEFNRLAKSLAEANKKI---GQAGTQVpNQLLDERDRILTEMSKYANI-EVSYEsmNPNIASVRMNGVLTVNG 239
flgK PRK12715
flagellar hook-associated protein FlgK; Provisional
 10-258 2.62e-09

flagellar hook-associated protein FlgK; Provisional


Pssm-ID: 183698 [Multi-domain]  Cd Length: 649  Bit Score: 59.36  E-value: 2.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  10 ALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSP---QSLGGN--GAGVRVDSVTRAINQ-------SVLNDRRLADA 77
Cdd:PRK12715    7 AYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPiasNRYAGSyiGAGVSVSSIYRNVDQfanaqvrSTLSYRTQYDA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  78 EAgNRQLRSDFLAGIEArigrpgepASLGARIDALESALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQSRMDA 157
Cdd:PRK12715   87 FY-NQAIQIDKLLSQDG--------SSISVPLQTFFDSIGQLNSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 158 DAAIAREVGTLNETLAQIDRLNAEILtqrsSGRDATALMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILLDGNP 237
Cdd:PRK12715  158 TLQVTESVKIINRITKELAEVNGKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVAGTQ 233

                         250       260
                  ....*....|....*....|....
gi 1309098561 238 A---VIGFAPVGVITPDMTLASGA 258
Cdd:PRK12715  234 QrdlVVGTGKDSIFGTKIFLSSGG 257
flgK PRK05683
flagellar hook-associated protein FlgK; Validated
 6-238 4.55e-09

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235558 [Multi-domain]  Cd Length: 676  Bit Score: 58.97  E-value: 4.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   6 SLAN-ALSGLNAASRSAEVVSSNVANVMTAGYARREV---NLSPQSLGGN--GAGVRVDSVTRAINQSVLNDRRLA---- 75
Cdd:PRK05683    2 SLISiGLSGLGASQTALAVTGNNIANVDTAGYSRQQTvqtTKASQQSGAGyiGTGTTLADVRRIYNSFLDTQLRTAtsln 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  76 -DAEAGNRQ------LRSDFLAGIEarigrpgepASLGARIDALESAlieATSRPDSAARlQGIADAADALGDHLNDLSR 148
Cdd:PRK05683   82 sDASAYLGQisqldkLLSDSTTGIS---------PALQRFFTALQTA---AANPTDTAAR-QLLLTQAQGLSKRFNSLSS 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 149 GL--QQSRMDAD-AAIAREVGTLNETLAQidrLNAEILTQRSSGRDATALMDQRQSLVDRVAEIVPVrEVARQNDQIALF 225
Cdd:PRK05683  149 QLnqQNSNINSQlSAMTDQVNNLTTSIAS---YNKQIAQASASGATPNDLLDARDEAVRQLNELVGV-TVVERDGNYDVY 224

                         250
                  ....*....|...
gi 1309098561 226 TTGGAILLDGNPA 238
Cdd:PRK05683  225 IGSGQPLVVGNTA 237
flgK PRK08471
flagellar hook-associated protein FlgK; Validated
 1-210 5.60e-08

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236270 [Multi-domain]  Cd Length: 613  Bit Score: 55.44  E-value: 5.60e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   1 MSLSTSLANALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSPQ-----SLGGNGAGVRVDSVTRAINQSVLNDRRLA 75
Cdd:PRK08471    2 MGIFSSLNTGYTGLQAAQVMVDTTGNNISNASSEFYTRQRVVQSAQaalntGGGNVGTGTDIETIVRIHDEFVYSRYKKA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  76 DAEAGNRQLRSDFLAGIEARIgrPgEPASLGARIDALE--SALIEATSRPDSAARLQGIADAADALGDHLNDLSRGLQQS 153
Cdd:PRK08471   82 STELEYTDYEFSTLQEASQYF--P-DLDDTGILKDLQDyfNAWNDFASNPKDSAQKQALAQKTETLTNNIKDTRERLDTL 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1309098561 154 RMDADAAIAREVGTLNETLAQIDRLNAEILTQRSSGRDATA--LMDQRQSLVDRVAEIV 210
Cdd:PRK08471  159 QKKVNEELKVTVDEINSLGKQIAEINKQIKEVEAGKTLKHAneLRDKRDELELTLSKLV 217
flgK PRK08871
flagellar hook-associated protein FlgK; Validated
 13-221 2.30e-07

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 181572 [Multi-domain]  Cd Length: 626  Bit Score: 53.31  E-value: 2.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  13 GLNAASRSAEVVSSNVANVMTAGYARREV---NLSPQSLGGN--GAGVRVDSVTRAINQSVLNDRRLAD---AEAGNRQL 84
Cdd:PRK08871   12 SVLTAQRQLNTTGHNISNVNTEGYSRQSViqgTNDPRQFGGStyGMGVHVENVRRSWDQFAVNELNLSTtnlANKTDTEA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  85 RSDFLAGIEARIGRPGEPASLGARIDALESAlieATSRPDSAARlQGIADAADALGDHLNDLSRGLQQSRMDADAAIARE 164
Cdd:PRK08871   92 NLDMLSSMLSSVASKKIPENLNEWFDAVKTL---ADSPNDLGAR-KVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLG 167

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1309098561 165 VGTLNETLAQIDRLNAeiLTQRSSGRDaTALMDQRQSLVDRVAEIVPVREVARQNDQ 221
Cdd:PRK08871  168 VERINQIALEIRDIHR--LMMRTPGPH-NDLMDQHEKLVKELSQYTKVTVTPRKNAE 221
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-66 2.82e-07

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 52.53  E-value: 2.82e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1309098561   1 MSLSTslanALSGLNAASRSAEVVSSNVANVMTAGYARREVN----LSPQSLGGN---GAGVRVDSVTRAINQ 66
Cdd:PRK05682    1 MSFNT----AVSGLNAASNRLDVIGNNIANANTTGFKSSRAEfadlYANSAGTNPtqvGSGVKVAGVAQQFSQ 69
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-62 9.17e-07

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 47.90  E-value: 9.17e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1309098561   1 MSLSTSLANALSGLNAASRSAEVVSSNVANVMTAG------YARREVNLSPQSLGGNGA-GVRVDSVTR 62
Cdd:PRK05681    1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAapdgdpYRRKQVVFAAELDPGQGTgGVKVAKIVE 69
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-66 9.23e-07

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 50.94  E-value: 9.23e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1309098561   1 MSLSTslanALSGLNAASRSAEVVSSNVANVMTAGYARREVNLS---PQSLGGN-----GAGVRVDSVTRAINQ 66
Cdd:COG1749     3 MSFNT----GVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFAdlvAQSLSGAnptqvGGGVRVASVAQIFTQ 72
flgK PRK12714
flagellar hook-associated protein FlgK; Provisional
 4-238 1.22e-06

flagellar hook-associated protein FlgK; Provisional


Pssm-ID: 183697 [Multi-domain]  Cd Length: 624  Bit Score: 51.10  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   4 STSLANALSGLNAASRSAEVVSSNVANVMTAGYARREVNLS---PQSLG----GNGAgvRVDSVTRAINQSVLNdrRLAD 76
Cdd:PRK12714    1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFAtrtPTDMGyafvGNGA--KITDVGRVADQLAIS--RLLD 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561  77 A--EAGNRQLRSDFLAGIEARIGRPGEPASlGARIDALESALIEATSRPDSAARlQGIADAADALGDHLNDLSRGLQQSR 154
Cdd:PRK12714   77 SggELSRLQQLSSLSNRVDALYSNTATNVA-GLWSNFFDSTSALSSNASSTAER-QSMLDSGNSLATRFKQLNGQMDSLS 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561 155 MDADAAIAREVGTLNETLAQIDRLNAEIltqRSSGRDATA-LMDQRQSLVDRVAEIVPVREVARQNDQIALFTTGGAILL 233
Cdd:PRK12714  155 NEVNSGLTSSVDEVNRLTQQIAKINGTI---GSSAQNAAPdLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALV 231


                  ....*
gi 1309098561 234 DGNPA 238
Cdd:PRK12714  232 VGTTA 236
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
1-62 9.67e-06

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 45.11  E-value: 9.67e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309098561   1 MSLSTSLANALSGLNAASRSAEVVSSNVANVMTAG------YARREVNLS--PQSLGGNGAGVRVDSVTR 62
Cdd:COG1558     1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRtsdggpYRRKQVVFEavLDRAGSGAAGVRVAGIVE 70
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 6-66 4.67e-05

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 44.55  E-value: 4.67e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1309098561   6 SLANALSGLNAASRSAEVVSSNVANVMTAGYARREVN----LSPQSLGGN--GAGVRVDSVTRAINQ 66
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEfqdlLSQSVSGSGqvGGGVRTSGVATDFSQ 68
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 447-484 5.24e-05

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 41.48  E-value: 5.24e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1309098561 447 GVDTDAEMQRLLMVEQAFSANARVIQMIDDLIQQLIGL 484
Cdd:pfam06429  37 NVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgB PRK12623
flagellar basal body rod protein FlgB; Provisional
 1-41 4.95e-04

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183630  Cd Length: 131  Bit Score: 40.16  E-value: 4.95e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1309098561   1 MSLSTSLANALS-GLNAASRSAEVVSSNVANVMTAGYARREV 41
Cdd:PRK12623    6 ISSDQLVYDLLKkGLDASSYRGKVISNNIANVNTKGYKRHYV 47
flgK PRK08471
flagellar hook-associated protein FlgK; Validated
 447-484 5.32e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236270 [Multi-domain]  Cd Length: 613  Bit Score: 39.26  E-value: 5.32e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1309098561 447 GVDTDAEMQRLLMVEQAFSANARVIQMIDDLIQQLIGL 484
Cdd:PRK08471  574 GVSTDEELVNLIKFQSSYGAAAKIITTIDQMLDTLLGI 611
flgE PRK06803
flagellar basal body protein FlaE;
1-62 9.31e-03

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 38.21  E-value: 9.31e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1309098561   1 MSLSTslanALSGLNAASRSAEVVSSNVANVMTAGYARREVNLSPQSLGGNGAGVRVDSVTR 62
Cdd:PRK06803    1 MSFNI----ALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQ 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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