|
Name |
Accession |
Description |
Interval |
E-value |
| DUF11 |
pfam01345 |
Domain of unknown function DUF11; A domain of unknown function found in multiple copies in ... |
553-668 |
1.99e-12 |
|
Domain of unknown function DUF11; A domain of unknown function found in multiple copies in several archaebacterial proteins. Conserved N-terminal lysine and C-terminal asparagine with central asp/glu suggests that many of these domain may contain an isopeptide bond. In Methanothermobacter sp. CaT2, a DUF11-containing repeat hypothetical protein encoded by MTCT_1020 plays a key role as a membrane-bound adhesion protein in the aggregation of CaT2. DUF11-containing repeat domains are not involved in aggregation, but may be important for stabilizing the surface cell wall structures of CaT2.
:
Pssm-ID: 460168 [Multi-domain] Cd Length: 114 Bit Score: 64.16 E-value: 1.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 553 DLAITKAADVATAAPGATITYTLTYRNLGETEATNFTIVDDFDE--RYVTVLDAAGGVVADGKItWTLaGPLAmADGPQT 630
Cdd:pfam01345 1 DLAITKTVDNTTPNVGDTVTFTITVTNNGPSDATGVVVTDTLPAglTFVSATASQGTYDSATGI-WTI-GSLA-VGASAT 77
|
90 100 110
....*....|....*....|....*....|....*....
gi 1309179805 631 ITYTVKVDStmptgTTNVDNTVVINHPD-DSNPDNNTDD 668
Cdd:pfam01345 78 LTITATVNT-----AGTITNTATVTSSTfDPNLSNNSAS 111
|
|
| SdrD_B super family |
cl25441 |
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This ... |
439-510 |
5.90e-10 |
|
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.
The actual alignment was detected with superfamily member pfam17210:
Pssm-ID: 435789 [Multi-domain] Cd Length: 112 Bit Score: 57.22 E-value: 5.90e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1309179805 439 YKFNDLNGDGIWDEGEPGIEGWTIYLYRQVPQIVlndaptpepgfelyATTLTGADGSYHFSGVLPGTYYVA 510
Cdd:pfam17210 6 FVWEDANKNGIQDAGEPGISGVTVTLYDANGTVV--------------GTTTTDANGKYLFTNLAPGTYYVE 63
|
|
| rne super family |
cl35953 |
ribonuclease E; Reviewed |
40-129 |
6.05e-04 |
|
ribonuclease E; Reviewed
The actual alignment was detected with superfamily member PRK10811:
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.10 E-value: 6.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 40 EPAKQAPEVVAPAEVAVPDPATEEVVAQPVADVVPEEPVVEVPASTET---------------VVSEEIAPVTAEVAVPV 104
Cdd:PRK10811 867 QPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETthpeviaapvteqpqVITESDVAVAQEVAEHA 946
|
90 100
....*....|....*....|....*
gi 1309179805 105 AKATPTATTPTAIVSTSLVEPIVVP 129
Cdd:PRK10811 947 EPVVEPQDETADIEEAAETAEVVVA 971
|
|
| ClfA super family |
cl34840 |
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ... |
231-675 |
7.68e-03 |
|
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];
The actual alignment was detected with superfamily member COG4932:
Pssm-ID: 443959 [Multi-domain] Cd Length: 689 Bit Score: 39.57 E-value: 7.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 231 EPETGSITVVKfndLDGDGQKSeseptLDGWDFALTLPTGGMLTGTSGA--DGPGAVLFGELPAGTYSVDETAKPGWHNT 308
Cdd:COG4932 258 KYTKGSVTVTK---TDADTGEP-----LAGATFTLTDADGNTVVTTTVTvtDADGSYTFTDLPPGTYTVTETKAPAGYDL 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 309 TTLPMDVTLAEGEDKTVYVGNAEDPAEDFTKTF--ELTYNGDIP-AETTFRVHYTLGTppeevapaIVDGTWLDLVGTGP 385
Cdd:COG4932 330 DGEAVKVTITAGQTTTVTVTNGNNEVKTGSVTLtkVDADDGEAPlAGAEFTLTDADGT--------VVATITTDADGTAS 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 386 FSasvELPAG--TIIESVdwyAQRGLEqiLLGTTEGETLTEDITNSFTYNGDASGykfndlNGDGIWDEGEPGIEGWTIY 463
Cdd:COG4932 402 FK---GLAPGtyTLTETK---APEGYT--LDSTPITVTVTDGGTGAIDTITNERK------KGSVQVTKVDAPLAGATFT 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 464 LYRQVPQIV--LNDAPTPEPGFELYATTL--TGADGSYHFSGVLPGTYYVAEETregwdMTVGPEGTFVMVNDQPITGLI 539
Cdd:COG4932 468 LTDADGTVVtlTTDADLAGATFEADGKVVttTDASGKYTFKNLPPGTYTDAGGS-----ATVITDDTDGTVGDEATGTDP 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 540 FGNHEPFLPFTDIDLAITKAADVATAAPGATITYTLTYRNLGETEATNFTIVDDFDERYVTVLDAAGGVVADGKITWTLA 619
Cdd:COG4932 543 EVTVTGKSTTTTPDVALLTNLGTTEDALTSLAKTGDEVGKGLTLTTTTTVDTLDTNATEKTETVTVTAQLIGVKTTKLTD 622
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1309179805 620 GPLAMADGPQTITYTVKVDSTMPTGTTNVDNTVVINHPDDSNPDNNTDDERVRVTV 675
Cdd:COG4932 623 TTDPKGGTVEEATTTGGTANTGKTGTDLTDDTTVTSTTNTATSVEDTTDVDNKDAF 678
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DUF11 |
pfam01345 |
Domain of unknown function DUF11; A domain of unknown function found in multiple copies in ... |
553-668 |
1.99e-12 |
|
Domain of unknown function DUF11; A domain of unknown function found in multiple copies in several archaebacterial proteins. Conserved N-terminal lysine and C-terminal asparagine with central asp/glu suggests that many of these domain may contain an isopeptide bond. In Methanothermobacter sp. CaT2, a DUF11-containing repeat hypothetical protein encoded by MTCT_1020 plays a key role as a membrane-bound adhesion protein in the aggregation of CaT2. DUF11-containing repeat domains are not involved in aggregation, but may be important for stabilizing the surface cell wall structures of CaT2.
Pssm-ID: 460168 [Multi-domain] Cd Length: 114 Bit Score: 64.16 E-value: 1.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 553 DLAITKAADVATAAPGATITYTLTYRNLGETEATNFTIVDDFDE--RYVTVLDAAGGVVADGKItWTLaGPLAmADGPQT 630
Cdd:pfam01345 1 DLAITKTVDNTTPNVGDTVTFTITVTNNGPSDATGVVVTDTLPAglTFVSATASQGTYDSATGI-WTI-GSLA-VGASAT 77
|
90 100 110
....*....|....*....|....*....|....*....
gi 1309179805 631 ITYTVKVDStmptgTTNVDNTVVINHPD-DSNPDNNTDD 668
Cdd:pfam01345 78 LTITATVNT-----AGTITNTATVTSSTfDPNLSNNSAS 111
|
|
| SdrD_B |
pfam17210 |
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This ... |
439-510 |
5.90e-10 |
|
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.
Pssm-ID: 435789 [Multi-domain] Cd Length: 112 Bit Score: 57.22 E-value: 5.90e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1309179805 439 YKFNDLNGDGIWDEGEPGIEGWTIYLYRQVPQIVlndaptpepgfelyATTLTGADGSYHFSGVLPGTYYVA 510
Cdd:pfam17210 6 FVWEDANKNGIQDAGEPGISGVTVTLYDANGTVV--------------GTTTTDANGKYLFTNLAPGTYYVE 63
|
|
| MJ0795 |
COG1361 |
S-layer protein MJ0795, predicted component of type IV pili-like system [General function ... |
552-708 |
2.63e-06 |
|
S-layer protein MJ0795, predicted component of type IV pili-like system [General function prediction only];
Pssm-ID: 440972 [Multi-domain] Cd Length: 409 Bit Score: 50.46 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 552 IDLAITKaaDVATAAPGATITYTLTYRNLGETEATNftivddfderyVTV-LDAAGGVVADGKiTWTLaGPLAmADGPQT 630
Cdd:COG1361 270 ADFEVEN--VESTITAGETVTITITVTNTGNETAKN-----------VVArLSADDPLSSLDD-EAFI-GDLA-PGESAT 333
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1309179805 631 ITYTVKVDSTMPTGTTNVdnTVVINHPDDSNPDNNTDDERVRVTVQGEPflPFTGGEALLLVSAAILSAGVGALLRRR 708
Cdd:COG1361 334 VTFTVSASSDATPGTYPI--TVTIRYDDDDGNTQLSDTITVPVEVTEPS--SGGLLTVLAIIIGLLIVAVGGYLYRRR 407
|
|
| RrgB_K2N_iso_D2 |
TIGR04226 |
fimbrial isopeptide formation D2 domain; The Streptococcus Pneumoniae pilus backbone protein, ... |
556-655 |
3.18e-04 |
|
fimbrial isopeptide formation D2 domain; The Streptococcus Pneumoniae pilus backbone protein, RrgB, has three tandem domains with Lys-to-Asn isopeptide bonds, but these three regions are extremely divergent in sequence. This model represents the homology domain family of the D2 domain. It occurs just once in many surface proteins but up to twenty times in some pilin subunit proteins. Three of every four members have the typical Gram-positive C-terminal motif, LPXTG, although in many cases this motif may be involved in pilin subunit cross-linking rather than cell wall attachment. Proteins with this domain include fimbrial proteins with lectin-like adhesion functions, and the majority of characterized members are involved in surface adhesion to host structures.
Pssm-ID: 275067 [Multi-domain] Cd Length: 124 Bit Score: 41.10 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 556 ITK---AADVATAAPGATITYTLTYRN-LGETEATNFTIVDDFDERyvtvLDAAGG--VVADGK---------------I 614
Cdd:TIGR04226 5 ITKkvnDKDDADVNIGDEVTYTITTTVpADIADYKSFVITDTLDDG----LTYKGSvkVTVDGKtltvdtdytvtdgqtV 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1309179805 615 TWTL--AGPLAMADGPQTITYTVKVDSTMPTGTTNvDNTVVIN 655
Cdd:TIGR04226 81 TVTFtdAGLKKLAGKKITVTYTAKVKEGAVLGKGI-PNTATLT 122
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
40-129 |
6.05e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.10 E-value: 6.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 40 EPAKQAPEVVAPAEVAVPDPATEEVVAQPVADVVPEEPVVEVPASTET---------------VVSEEIAPVTAEVAVPV 104
Cdd:PRK10811 867 QPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETthpeviaapvteqpqVITESDVAVAQEVAEHA 946
|
90 100
....*....|....*....|....*
gi 1309179805 105 AKATPTATTPTAIVSTSLVEPIVVP 129
Cdd:PRK10811 947 EPVVEPQDETADIEEAAETAEVVVA 971
|
|
| ClfA |
COG4932 |
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ... |
231-675 |
7.68e-03 |
|
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443959 [Multi-domain] Cd Length: 689 Bit Score: 39.57 E-value: 7.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 231 EPETGSITVVKfndLDGDGQKSeseptLDGWDFALTLPTGGMLTGTSGA--DGPGAVLFGELPAGTYSVDETAKPGWHNT 308
Cdd:COG4932 258 KYTKGSVTVTK---TDADTGEP-----LAGATFTLTDADGNTVVTTTVTvtDADGSYTFTDLPPGTYTVTETKAPAGYDL 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 309 TTLPMDVTLAEGEDKTVYVGNAEDPAEDFTKTF--ELTYNGDIP-AETTFRVHYTLGTppeevapaIVDGTWLDLVGTGP 385
Cdd:COG4932 330 DGEAVKVTITAGQTTTVTVTNGNNEVKTGSVTLtkVDADDGEAPlAGAEFTLTDADGT--------VVATITTDADGTAS 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 386 FSasvELPAG--TIIESVdwyAQRGLEqiLLGTTEGETLTEDITNSFTYNGDASGykfndlNGDGIWDEGEPGIEGWTIY 463
Cdd:COG4932 402 FK---GLAPGtyTLTETK---APEGYT--LDSTPITVTVTDGGTGAIDTITNERK------KGSVQVTKVDAPLAGATFT 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 464 LYRQVPQIV--LNDAPTPEPGFELYATTL--TGADGSYHFSGVLPGTYYVAEETregwdMTVGPEGTFVMVNDQPITGLI 539
Cdd:COG4932 468 LTDADGTVVtlTTDADLAGATFEADGKVVttTDASGKYTFKNLPPGTYTDAGGS-----ATVITDDTDGTVGDEATGTDP 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 540 FGNHEPFLPFTDIDLAITKAADVATAAPGATITYTLTYRNLGETEATNFTIVDDFDERYVTVLDAAGGVVADGKITWTLA 619
Cdd:COG4932 543 EVTVTGKSTTTTPDVALLTNLGTTEDALTSLAKTGDEVGKGLTLTTTTTVDTLDTNATEKTETVTVTAQLIGVKTTKLTD 622
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1309179805 620 GPLAMADGPQTITYTVKVDSTMPTGTTNVDNTVVINHPDDSNPDNNTDDERVRVTV 675
Cdd:COG4932 623 TTDPKGGTVEEATTTGGTANTGKTGTDLTDDTTVTSTTNTATSVEDTTDVDNKDAF 678
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DUF11 |
pfam01345 |
Domain of unknown function DUF11; A domain of unknown function found in multiple copies in ... |
553-668 |
1.99e-12 |
|
Domain of unknown function DUF11; A domain of unknown function found in multiple copies in several archaebacterial proteins. Conserved N-terminal lysine and C-terminal asparagine with central asp/glu suggests that many of these domain may contain an isopeptide bond. In Methanothermobacter sp. CaT2, a DUF11-containing repeat hypothetical protein encoded by MTCT_1020 plays a key role as a membrane-bound adhesion protein in the aggregation of CaT2. DUF11-containing repeat domains are not involved in aggregation, but may be important for stabilizing the surface cell wall structures of CaT2.
Pssm-ID: 460168 [Multi-domain] Cd Length: 114 Bit Score: 64.16 E-value: 1.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 553 DLAITKAADVATAAPGATITYTLTYRNLGETEATNFTIVDDFDE--RYVTVLDAAGGVVADGKItWTLaGPLAmADGPQT 630
Cdd:pfam01345 1 DLAITKTVDNTTPNVGDTVTFTITVTNNGPSDATGVVVTDTLPAglTFVSATASQGTYDSATGI-WTI-GSLA-VGASAT 77
|
90 100 110
....*....|....*....|....*....|....*....
gi 1309179805 631 ITYTVKVDStmptgTTNVDNTVVINHPD-DSNPDNNTDD 668
Cdd:pfam01345 78 LTITATVNT-----AGTITNTATVTSSTfDPNLSNNSAS 111
|
|
| SdrD_B |
pfam17210 |
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This ... |
439-510 |
5.90e-10 |
|
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.
Pssm-ID: 435789 [Multi-domain] Cd Length: 112 Bit Score: 57.22 E-value: 5.90e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1309179805 439 YKFNDLNGDGIWDEGEPGIEGWTIYLYRQVPQIVlndaptpepgfelyATTLTGADGSYHFSGVLPGTYYVA 510
Cdd:pfam17210 6 FVWEDANKNGIQDAGEPGISGVTVTLYDANGTVV--------------GTTTTDANGKYLFTNLAPGTYYVE 63
|
|
| MJ0795 |
COG1361 |
S-layer protein MJ0795, predicted component of type IV pili-like system [General function ... |
552-708 |
2.63e-06 |
|
S-layer protein MJ0795, predicted component of type IV pili-like system [General function prediction only];
Pssm-ID: 440972 [Multi-domain] Cd Length: 409 Bit Score: 50.46 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 552 IDLAITKaaDVATAAPGATITYTLTYRNLGETEATNftivddfderyVTV-LDAAGGVVADGKiTWTLaGPLAmADGPQT 630
Cdd:COG1361 270 ADFEVEN--VESTITAGETVTITITVTNTGNETAKN-----------VVArLSADDPLSSLDD-EAFI-GDLA-PGESAT 333
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1309179805 631 ITYTVKVDSTMPTGTTNVdnTVVINHPDDSNPDNNTDDERVRVTVQGEPflPFTGGEALLLVSAAILSAGVGALLRRR 708
Cdd:COG1361 334 VTFTVSASSDATPGTYPI--TVTIRYDDDDGNTQLSDTITVPVEVTEPS--SGGLLTVLAIIIGLLIVAVGGYLYRRR 407
|
|
| MJ0795 |
COG1361 |
S-layer protein MJ0795, predicted component of type IV pili-like system [General function ... |
553-679 |
3.74e-05 |
|
S-layer protein MJ0795, predicted component of type IV pili-like system [General function prediction only];
Pssm-ID: 440972 [Multi-domain] Cd Length: 409 Bit Score: 46.61 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 553 DLAITKAADVATAAPGATITYTLTYRNLGETEATNFTIV------------DDFDERYVTVLDAAGGVVADGKITWTLaG 620
Cdd:COG1361 137 RFEVVSVTSPDSLTPGDTGTLTLTIKNTGTGTAKNVTVTltspsgdltdlePGPRPATNVVVVLSSPVSPVGSNSVAL-G 215
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1309179805 621 PLAmADGPQTITYTVKVDSTMPTGTTNVDNTVVInhpDDSNPDNNTDDERVRVTVQGEP 679
Cdd:COG1361 216 TLE-PGESATFTFKVDVSEDAEPGPYPLPLTVTY---RDEDGDTYSDTVTIGVYVAPKA 270
|
|
| RrgB_K2N_iso_D2 |
TIGR04226 |
fimbrial isopeptide formation D2 domain; The Streptococcus Pneumoniae pilus backbone protein, ... |
556-655 |
3.18e-04 |
|
fimbrial isopeptide formation D2 domain; The Streptococcus Pneumoniae pilus backbone protein, RrgB, has three tandem domains with Lys-to-Asn isopeptide bonds, but these three regions are extremely divergent in sequence. This model represents the homology domain family of the D2 domain. It occurs just once in many surface proteins but up to twenty times in some pilin subunit proteins. Three of every four members have the typical Gram-positive C-terminal motif, LPXTG, although in many cases this motif may be involved in pilin subunit cross-linking rather than cell wall attachment. Proteins with this domain include fimbrial proteins with lectin-like adhesion functions, and the majority of characterized members are involved in surface adhesion to host structures.
Pssm-ID: 275067 [Multi-domain] Cd Length: 124 Bit Score: 41.10 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 556 ITK---AADVATAAPGATITYTLTYRN-LGETEATNFTIVDDFDERyvtvLDAAGG--VVADGK---------------I 614
Cdd:TIGR04226 5 ITKkvnDKDDADVNIGDEVTYTITTTVpADIADYKSFVITDTLDDG----LTYKGSvkVTVDGKtltvdtdytvtdgqtV 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1309179805 615 TWTL--AGPLAMADGPQTITYTVKVDSTMPTGTTNvDNTVVIN 655
Cdd:TIGR04226 81 TVTFtdAGLKKLAGKKITVTYTAKVKEGAVLGKGI-PNTATLT 122
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
40-129 |
6.05e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.10 E-value: 6.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 40 EPAKQAPEVVAPAEVAVPDPATEEVVAQPVADVVPEEPVVEVPASTET---------------VVSEEIAPVTAEVAVPV 104
Cdd:PRK10811 867 QPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETthpeviaapvteqpqVITESDVAVAQEVAEHA 946
|
90 100
....*....|....*....|....*
gi 1309179805 105 AKATPTATTPTAIVSTSLVEPIVVP 129
Cdd:PRK10811 947 EPVVEPQDETADIEEAAETAEVVVA 971
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
40-106 |
1.20e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 42.33 E-value: 1.20e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1309179805 40 EPAKQAPEVVAPAEVAVPDPATEEvvAQPVADVVPEEPVVEVPASTE-------TVVSEEIAPVTAEVAVPVAK 106
Cdd:PRK10811 922 APVTEQPQVITESDVAVAQEVAEH--AEPVVEPQDETADIEEAAETAevvvaepEVVAQPAAPVVAEVAAEVET 993
|
|
| COG4719 |
COG4719 |
Uncharacterized conserved protein, UCP014979 family [Function unknown]; |
561-611 |
2.02e-03 |
|
Uncharacterized conserved protein, UCP014979 family [Function unknown];
Pssm-ID: 443754 Cd Length: 167 Bit Score: 39.64 E-value: 2.02e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1309179805 561 DVATAAPGATITYTLTYRNLGETEATNFTIVDDFDERYVTVLDAAGGVVAD 611
Cdd:COG4719 55 PAATVVPGDVLRYTLTYRNTGDRPATGLVITNPIPEGTIYVLASATGLGAT 105
|
|
| MJ0795 |
COG1361 |
S-layer protein MJ0795, predicted component of type IV pili-like system [General function ... |
564-681 |
2.33e-03 |
|
S-layer protein MJ0795, predicted component of type IV pili-like system [General function prediction only];
Pssm-ID: 440972 [Multi-domain] Cd Length: 409 Bit Score: 40.83 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 564 TAAPGATITYTLTYRNLGETEATNFTIVDDFDE--RYVTVLDAAGGVVADGKitwtlagplamadgPQTITYTVKVDSTM 641
Cdd:COG1361 35 EVAPGEEVTLTVTITNDGTLTARNVTVELEGDYpfEVKSGEQSVGGSLPPGQ--------------SVTVTFTVTVPEDA 100
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1309179805 642 PTGTTNVDntVVINHPDDSNPDNNTDDERVRVTVQGEPFL 681
Cdd:COG1361 101 EPGTYPIP--VTVSYSYGYTDRTETETYTVTVKVEGEPRF 138
|
|
| B_ant_repeat |
TIGR01451 |
conserved repeat domain; This model represents the conserved region of about 53 amino acids ... |
558-592 |
2.65e-03 |
|
conserved repeat domain; This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Pssm-ID: 273634 [Multi-domain] Cd Length: 53 Bit Score: 36.44 E-value: 2.65e-03
10 20 30
....*....|....*....|....*....|....*
gi 1309179805 558 KAADVATAAPGATITYTLTYRNLGETEATNFTIVD 592
Cdd:TIGR01451 1 KTVDKTVATIGDTITYTITVTNNGNVPATNVVVTD 35
|
|
| isopep_sspB_C2 |
TIGR04228 |
adhesin isopeptide-forming domain, sspB-C2 type; This domain has a conserved Lys (position 3 ... |
561-613 |
5.64e-03 |
|
adhesin isopeptide-forming domain, sspB-C2 type; This domain has a conserved Lys (position 3 in seed alignment) and Asn at 177 that form an intramolecular isopeptide bond. The Asp (or Glu) at position 59
Pssm-ID: 275068 [Multi-domain] Cd Length: 173 Bit Score: 38.43 E-value: 5.64e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1309179805 561 DVATAAPGATITYTLT-----YRNLG---ETEATNFTIVDDFDERYVTVLDAAGGVV-ADGK 613
Cdd:TIGR04228 14 DGKTVLPGSTNYYRLTwdlsqYKGIKaskEAIAKGFGYVDDYDEEALTVDQDKITITdSNGK 75
|
|
| ClfA |
COG4932 |
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ... |
231-675 |
7.68e-03 |
|
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443959 [Multi-domain] Cd Length: 689 Bit Score: 39.57 E-value: 7.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 231 EPETGSITVVKfndLDGDGQKSeseptLDGWDFALTLPTGGMLTGTSGA--DGPGAVLFGELPAGTYSVDETAKPGWHNT 308
Cdd:COG4932 258 KYTKGSVTVTK---TDADTGEP-----LAGATFTLTDADGNTVVTTTVTvtDADGSYTFTDLPPGTYTVTETKAPAGYDL 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 309 TTLPMDVTLAEGEDKTVYVGNAEDPAEDFTKTF--ELTYNGDIP-AETTFRVHYTLGTppeevapaIVDGTWLDLVGTGP 385
Cdd:COG4932 330 DGEAVKVTITAGQTTTVTVTNGNNEVKTGSVTLtkVDADDGEAPlAGAEFTLTDADGT--------VVATITTDADGTAS 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 386 FSasvELPAG--TIIESVdwyAQRGLEqiLLGTTEGETLTEDITNSFTYNGDASGykfndlNGDGIWDEGEPGIEGWTIY 463
Cdd:COG4932 402 FK---GLAPGtyTLTETK---APEGYT--LDSTPITVTVTDGGTGAIDTITNERK------KGSVQVTKVDAPLAGATFT 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 464 LYRQVPQIV--LNDAPTPEPGFELYATTL--TGADGSYHFSGVLPGTYYVAEETregwdMTVGPEGTFVMVNDQPITGLI 539
Cdd:COG4932 468 LTDADGTVVtlTTDADLAGATFEADGKVVttTDASGKYTFKNLPPGTYTDAGGS-----ATVITDDTDGTVGDEATGTDP 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309179805 540 FGNHEPFLPFTDIDLAITKAADVATAAPGATITYTLTYRNLGETEATNFTIVDDFDERYVTVLDAAGGVVADGKITWTLA 619
Cdd:COG4932 543 EVTVTGKSTTTTPDVALLTNLGTTEDALTSLAKTGDEVGKGLTLTTTTTVDTLDTNATEKTETVTVTAQLIGVKTTKLTD 622
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1309179805 620 GPLAMADGPQTITYTVKVDSTMPTGTTNVDNTVVINHPDDSNPDNNTDDERVRVTV 675
Cdd:COG4932 623 TTDPKGGTVEEATTTGGTANTGKTGTDLTDDTTVTSTTNTATSVEDTTDVDNKDAF 678
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