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Conserved domains on  [gi|1377228039|gb|PTR48695|]
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flagellar hook-basal body complex protein FliE [Geobacillus thermodenitrificans]

Protein Classification

flagellar hook-basal body complex protein FliE( domain architecture ID 10014068)

flagellar hook-basal body complex protein FliE which serves as a structural assembly platform for the rod, and may also serve as a regulator of flagellum-specific secretion

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliE PRK12728
flagellar hook-basal body protein FliE; Provisional
 1-98 2.81e-43

flagellar hook-basal body protein FliE; Provisional


:

Pssm-ID: 237183  Cd Length: 102  Bit Score: 136.24  E-value: 2.81e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039   1 MLDGVSRVGLTPVSTVPNP---VKPAEVQKQFAAFLKEALNNVNDKQIQADALTEKLVRGENVQLHDVMIAAQKASVALQ 77
Cdd:PRK12728    2 MINEISPNQKVFDQNGSNKtnkNNPAEAQKSFSDFLKEALNKVNELQVEADNSTEKLVKGEIVDLHDVMIAAQKASISLQ 81

                          90       100
                  ....*....|....*....|.
gi 1377228039  78 LTIEIRNKAIEAYQEMMRMPL 98
Cdd:PRK12728   82 LTVQIRNKVVEAYQEIMRMQL 102
 
Name Accession Description Interval E-value
fliE PRK12728
flagellar hook-basal body protein FliE; Provisional
 1-98 2.81e-43

flagellar hook-basal body protein FliE; Provisional


Pssm-ID: 237183  Cd Length: 102  Bit Score: 136.24  E-value: 2.81e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039   1 MLDGVSRVGLTPVSTVPNP---VKPAEVQKQFAAFLKEALNNVNDKQIQADALTEKLVRGENVQLHDVMIAAQKASVALQ 77
Cdd:PRK12728    2 MINEISPNQKVFDQNGSNKtnkNNPAEAQKSFSDFLKEALNKVNELQVEADNSTEKLVKGEIVDLHDVMIAAQKASISLQ 81

                          90       100
                  ....*....|....*....|.
gi 1377228039  78 LTIEIRNKAIEAYQEMMRMPL 98
Cdd:PRK12728   82 LTVQIRNKVVEAYQEIMRMQL 102
FliE pfam02049
Flagellar hook-basal body complex protein FliE;
17-98 4.28e-32

Flagellar hook-basal body complex protein FliE;


Pssm-ID: 460429  Cd Length: 89  Bit Score: 107.27  E-value: 4.28e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039 17 PNPVKPAEVQKQFAAFLKEALNNVNDKQIQADALTEKLVRGENVQLHDVMIAAQKASVALQLTIEIRNKAIEAYQEMMRM 96
Cdd:pfam02049  8 AASAAAAAGGGSFASVLKDALDEVNQTQQEAEALAEAFATGEPVDLHDVMIAMQKASLSLQLTVQVRNKLVEAYQEIMRM 87


                 ..
gi 1377228039 97 PL 98
Cdd:pfam02049 88 QV 89
FliE COG1677
Flagellar hook-basal body complex protein FliE [Cell motility];
13-98 3.78e-31

Flagellar hook-basal body complex protein FliE [Cell motility];


Pssm-ID: 441283  Cd Length: 105  Bit Score: 105.44  E-value: 3.78e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039  13 VSTVPNPVKPAEVQKQFAAFLKEALNNVNDKQIQADALTEKLVRGENVQLHDVMIAAQKASVALQLTIEIRNKAIEAYQE 92
Cdd:COG1677    20 AAPSAAAAAPAAGGASFGDVLKDALDDVNQTQQEAEALAQAFATGKSVDLHDVMIAMQKASLSLQLTVQVRNKLVEAYQE 99


                  ....*.
gi 1377228039  93 MMRMPL 98
Cdd:COG1677   100 IMRMQV 105
fliE TIGR00205
flagellar hook-basal body complex protein FliE; fliE is a component of the flagellar ...
 29-96 7.65e-20

flagellar hook-basal body complex protein FliE; fliE is a component of the flagellar hook-basal body complex located possibly at (MS-ring)-rod junction. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 272960  Cd Length: 108  Bit Score: 76.89  E-value: 7.65e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1377228039  29 FAAFLKEALNNVNDKQIQADALTEKLVRGE-NVQLHDVMIAAQKASVALQLTIEIRNKAIEAYQEMMRM 96
Cdd:TIGR00205  39 FSDLLKNSITDLNKTQLASDKVTEQAALGPsSVDLHDVMIAMQKASMSMSILKEVRNKAVKAYQEIMRM 107
 
Name Accession Description Interval E-value
fliE PRK12728
flagellar hook-basal body protein FliE; Provisional
 1-98 2.81e-43

flagellar hook-basal body protein FliE; Provisional


Pssm-ID: 237183  Cd Length: 102  Bit Score: 136.24  E-value: 2.81e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039   1 MLDGVSRVGLTPVSTVPNP---VKPAEVQKQFAAFLKEALNNVNDKQIQADALTEKLVRGENVQLHDVMIAAQKASVALQ 77
Cdd:PRK12728    2 MINEISPNQKVFDQNGSNKtnkNNPAEAQKSFSDFLKEALNKVNELQVEADNSTEKLVKGEIVDLHDVMIAAQKASISLQ 81

                          90       100
                  ....*....|....*....|.
gi 1377228039  78 LTIEIRNKAIEAYQEMMRMPL 98
Cdd:PRK12728   82 LTVQIRNKVVEAYQEIMRMQL 102
FliE pfam02049
Flagellar hook-basal body complex protein FliE;
17-98 4.28e-32

Flagellar hook-basal body complex protein FliE;


Pssm-ID: 460429  Cd Length: 89  Bit Score: 107.27  E-value: 4.28e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039 17 PNPVKPAEVQKQFAAFLKEALNNVNDKQIQADALTEKLVRGENVQLHDVMIAAQKASVALQLTIEIRNKAIEAYQEMMRM 96
Cdd:pfam02049  8 AASAAAAAGGGSFASVLKDALDEVNQTQQEAEALAEAFATGEPVDLHDVMIAMQKASLSLQLTVQVRNKLVEAYQEIMRM 87


                 ..
gi 1377228039 97 PL 98
Cdd:pfam02049 88 QV 89
FliE COG1677
Flagellar hook-basal body complex protein FliE [Cell motility];
13-98 3.78e-31

Flagellar hook-basal body complex protein FliE [Cell motility];


Pssm-ID: 441283  Cd Length: 105  Bit Score: 105.44  E-value: 3.78e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039  13 VSTVPNPVKPAEVQKQFAAFLKEALNNVNDKQIQADALTEKLVRGENVQLHDVMIAAQKASVALQLTIEIRNKAIEAYQE 92
Cdd:COG1677    20 AAPSAAAAAPAAGGASFGDVLKDALDDVNQTQQEAEALAQAFATGKSVDLHDVMIAMQKASLSLQLTVQVRNKLVEAYQE 99


                  ....*.
gi 1377228039  93 MMRMPL 98
Cdd:COG1677   100 IMRMQV 105
fliE PRK00253
flagellar hook-basal body protein FliE; Reviewed
 7-97 2.26e-24

flagellar hook-basal body protein FliE; Reviewed


Pssm-ID: 178948  Cd Length: 108  Bit Score: 88.48  E-value: 2.26e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039   7 RVGLTPVSTVPNPVKPAEVQK-QFAAFLKEALNNVNDKQIQADALTEKLVRGEN-VQLHDVMIAAQKASVALQLTIEIRN 84
Cdd:PRK00253   15 QATAMEASGQAKPAQGAAVGTaDFAGQLKAALDKVNDTQQAARTLAEKFELGDPgVSLNDVMIALQKASVSFQAGIQVRN 94

                          90
                  ....*....|...
gi 1377228039  85 KAIEAYQEMMRMP 97
Cdd:PRK00253   95 KLVAAYQEIMNMQ 107
fliE PRK12729
flagellar hook-basal body protein FliE; Provisional
 16-93 1.50e-20

flagellar hook-basal body protein FliE; Provisional


Pssm-ID: 183707  Cd Length: 127  Bit Score: 79.31  E-value: 1.50e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1377228039  16 VPNPVKPAEVQKQFAAFLKEALNNVNDKQIQADALTEKLVRGEN-VQLHDVMIAAQKASVALQLTIEIRNKAIEAYQEM 93
Cdd:PRK12729   45 VKQPVSPDYVAESFSEAMKNALTSVNDLQVEADELTQKMVFDPNsVDAHDVMIASEKARVALTFTKTIADGVVRAYREL 123
fliE TIGR00205
flagellar hook-basal body complex protein FliE; fliE is a component of the flagellar ...
 29-96 7.65e-20

flagellar hook-basal body complex protein FliE; fliE is a component of the flagellar hook-basal body complex located possibly at (MS-ring)-rod junction. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 272960  Cd Length: 108  Bit Score: 76.89  E-value: 7.65e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1377228039  29 FAAFLKEALNNVNDKQIQADALTEKLVRGE-NVQLHDVMIAAQKASVALQLTIEIRNKAIEAYQEMMRM 96
Cdd:TIGR00205  39 FSDLLKNSITDLNKTQLASDKVTEQAALGPsSVDLHDVMIAMQKASMSMSILKEVRNKAVKAYQEIMRM 107
fliE PRK03907
flagellar hook-basal body complex protein FliE;
1-95 1.49e-14

flagellar hook-basal body complex protein FliE;


Pssm-ID: 235173  Cd Length: 97  Bit Score: 63.33  E-value: 1.49e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039  1 MLDGVSRVGLTPVSTVPNPVKPAEvQKQFAAFLKEALNNVNDKQIQADALTEKLVRGENVQLHDVMIAAQKASVALQLTI 80
Cdd:PRK03907   1 PFNNLNTDNRTKNEESGSTFKEQK-GGEFSKLLKQSINELNKTQEQSEKALADIATGQVKDLHQAAIAIGKAETSMKLML 79

                         90
                 ....*....|....*
gi 1377228039 81 EIRNKAIEAYQEMMR 95
Cdd:PRK03907  80 EVRNKAISAYKEILR 94
fliE PRK00732
flagellar hook-basal body complex protein FliE;
29-98 2.71e-09

flagellar hook-basal body complex protein FliE;


Pssm-ID: 179101  Cd Length: 102  Bit Score: 49.75  E-value: 2.71e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039  29 FAAFLKEALNNVNDKQIQADALTEKLVRGEnVQLHDVMIAAQKASVALQLTIEIRNKAIEAYQEMMRMPL 98
Cdd:PRK00732   34 FGALLKDAMGSVLEAGRKSDAQTAAMASGK-ANLMDVVTAVAETDVAVSTLVSVRDRVIQAYEEIMRMPI 102
fliE PRK01482
flagellar hook-basal body complex protein FliE;
27-93 3.32e-06

flagellar hook-basal body complex protein FliE;


Pssm-ID: 134562  Cd Length: 108  Bit Score: 42.10  E-value: 3.32e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1377228039  27 KQFAAFLKEALNNVNDKQIQADALTEK-LVRGENVQLHDVMIAAQKASVALQLTIEIRNKAIEAYQEM 93
Cdd:PRK01482   37 KTFKDTLLNAIDDVNNSQLNVSKVTEQaILDPESVDVHDVTIAMAKANMNLSIAKAVVERSIKAYQDI 104
fliE PRK00790
flagellar hook-basal body complex protein FliE;
6-97 7.22e-05

flagellar hook-basal body complex protein FliE;


Pssm-ID: 179126  Cd Length: 109  Bit Score: 38.49  E-value: 7.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1377228039   6 SRVGLTPVSTVPNPVKPAEVQKQFAAFLKEALNNVNDKQIQADALTEKLVRGEnVQLHDVMIAAQKASVALQLTIEIRNK 85
Cdd:PRK00790   18 SETVAEKSAAAAPAAAPAAPGASFASVLGQMAGDAVQTLKAAEATSIQAIKGK-ADTREVVDAVMQAEQALQTAVAIRDK 96

                          90
                  ....*....|..
gi 1377228039  86 AIEAYQEMMRMP 97
Cdd:PRK00790   97 VVEAYLEILRMP 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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