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Conserved domains on  [gi|122166182|sp|Q09MH7|]
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RecName: Full=Photosystem I assembly protein Ycf3

Protein Classification

photosystem I assembly protein Ycf3( domain architecture ID 11414006)

photosystem I assembly protein Ycf3 is essential for the assembly of the photosystem I (PSI) complex; may act as a chaperone-like factor to guide the assembly of the PSI subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 1.23e-131

photosystem I assembly protein Ycf3


:

Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 364.71  E-value: 1.23e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   1 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAVRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIQAQNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 122166182 161 LKITGRFE 168
Cdd:CHL00033 161 LKITGRFE 168
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 1.23e-131

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 364.71  E-value: 1.23e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   1 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAVRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIQAQNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 122166182 161 LKITGRFE 168
Cdd:CHL00033 161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-168 2.09e-99

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 283.53  E-value: 2.09e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   1 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:COG5713    1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAVRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIQAQNW 160
Cdd:COG5713   81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                 ....*...
gi 122166182 161 LKITGRFE 168
Cdd:COG5713  161 LKTTGRSK 168
TPR_1 pfam00515
Tetratricopeptide repeat;
72-103 1.53e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 1.53e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 122166182   72 SYILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 30-156 1.17e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   30 VGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDP-YDRSYIlyNIGLIHTSNGEHTKALEYYFRALERNPflpqa 108
Cdd:TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELDPrVTQSYI--KRASMNLELGDPDKAEEDFDKALKLNS----- 396

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 122166182  109 fNNMAVICHyRGEQAVRQGDseiaeawFNQAAEYWKQAIALTPGN---YIQ 156
Cdd:TIGR00990 397 -EDPDIYYH-RAQLHFIKGE-------FAQAGKDYQKSIDLDPDFifsHIQ 438
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-103 1.29e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.29e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 122166182    74 ILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 1.23e-131

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 364.71  E-value: 1.23e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   1 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAVRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIQAQNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 122166182 161 LKITGRFE 168
Cdd:CHL00033 161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-168 2.09e-99

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 283.53  E-value: 2.09e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   1 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:COG5713    1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAVRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIQAQNW 160
Cdd:COG5713   81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                 ....*...
gi 122166182 161 LKITGRFE 168
Cdd:COG5713  161 LKTTGRSK 168
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1-166 5.36e-98

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 280.02  E-value: 5.36e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   1 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:PRK02603   1 MPRTQRNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAVRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIQAQNW 160
Cdd:PRK02603  81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160


                 ....*.
gi 122166182 161 LKITGR 166
Cdd:PRK02603 161 LKTTGR 166
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-153 1.45e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 1.45e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNM 112
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA--LELDP-DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 122166182 113 AVICHYRGE--------QAVRQGDSEIAEAWFN------------QAAEYWKQAIALTPGN 153
Cdd:COG0457   83 GLALQALGRyeealedyDKALELDPDDAEALYNlglallelgrydEAIEAYERALELDPDD 143
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 34-161 1.48e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.55  E-value: 1.48e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  34 EAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMA 113
Cdd:COG3914  111 NAEALFNLGNLLLALGRLEEALAALRRA--LALNP-DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 122166182 114 VICHYRGEQAvrqgdseiaeawfnQAAEYWKQAIALTPGNYIQAQNWL 161
Cdd:COG3914  188 NALQDLGRLE--------------EAIAAYRRALELDPDNADAHSNLL 221
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
21-142 1.78e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.93  E-value: 1.78e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  21 ILLRIIPTTVGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALE 100
Cdd:COG4785   59 AAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA--LELDP-DLAEAYNNRGLAYLLLGDYDAALEDFDRALE 135

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 122166182 101 RNPFLPQAFNNMAVICHYRgeqavrqGDSEIAEAWFNQAAEY 142
Cdd:COG4785  136 LDPDYAYAYLNRGIALYYL-------GRYELAIADLEKALEL 170
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 19-168 9.95e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 9.95e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  19 ANILLRIIPTTVGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI----GLIHTSNGEHTKALEY 94
Cdd:COG3914   21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALlelaALLLQALGRYEEALAL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  95 YFRALERNPFLPQAFNNMAVICHYRG---------EQAVRQgDSEIAEAWFN------------QAAEYWKQAIALTPgN 153
Cdd:COG3914  101 YRRALALNPDNAEALFNLGNLLLALGrleealaalRRALAL-NPDFAEAYLNlgealrrlgrleEAIAALRRALELDP-D 178

                        170
                 ....*....|....*....
gi 122166182 154 YIQAQNWL----KITGRFE 168
Cdd:COG3914  179 NAEALNNLgnalQDLGRLE 197
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-161 2.08e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 2.08e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG0457   76 AEALNNLGLALQALGRYEEALEDYDKA--LELDPDD-AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 122166182 115 ICHyrgeqavRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIQAQNWL 161
Cdd:COG0457  153 ALE-------KLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 19-141 3.23e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.04  E-value: 3.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  19 ANILLRIIPTTVGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRA 98
Cdd:COG5010   38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA--LQLDPNN-PELYYNLALLYSRSGDKDEAKEYYEKA 114

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 122166182  99 LERNPFLPQAFNNMAVIchyrgeqAVRQGDSEIAEAWFNQAAE 141
Cdd:COG5010  115 LALSPDNPNAYSNLAAL-------LLSLGQDDEAKAALQRALG 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 42-153 1.06e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.77  E-value: 1.06e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIchyrge 121
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKA--LRLDP-DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA------ 94

                         90       100       110
                 ....*....|....*....|....*....|..
gi 122166182 122 qAVRQGDseiaeawFNQAAEYWKQAIALTPGN 153
Cdd:COG4235   95 -AFQQGD-------YAEAIAAWQKLLALLPAD 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
45-154 1.15e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.78  E-value: 1.15e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  45 AQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEyYFRALERNPFLPQAFNNMAVICHYRGEqav 124
Cdd:COG3063    2 YLKLGDLEEAEEYYEKA--LELDP-DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGD--- 74

                         90       100       110
                 ....*....|....*....|....*....|
gi 122166182 125 rqgdseiaeawFNQAAEYWKQAIALTPGNY 154
Cdd:COG3063   75 -----------YDEALAYLERALELDPSAL 93
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
33-161 2.49e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.45  E-value: 2.49e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPY----DRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 108
Cdd:COG4785   30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 122166182 109 FNNMAVIchyrgeqAVRQGDSEIAEAWFNQAAE--------YWKQAIALTP-GNYIQAQNWL 161
Cdd:COG4785  110 YNNRGLA-------YLLLGDYDAALEDFDRALEldpdyayaYLNRGIALYYlGRYELAIADL 164
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 35-153 8.60e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.65  E-value: 8.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKA--LELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 122166182 115 IchyrgeqAVRQGDseiaeawFNQAAEYWKQAIALTPGN 153
Cdd:COG4783   81 A-------LLKAGD-------YDEALALLEKALKLDPEH 105
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
64-161 9.97e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.01  E-value: 9.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  64 LEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEqavrqgdseiaeawFNQAAEYW 143
Cdd:COG0457    1 LELDP-DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR--------------YEEALADY 65

                         90
                 ....*....|....*...
gi 122166182 144 KQAIALTPgNYIQAQNWL 161
Cdd:COG0457   66 EQALELDP-DDAEALNNL 82
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 46-153 3.27e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 3.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  46 QSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRG----- 120
Cdd:COG2956   53 RRRGEYDRAIRIHQKL--LERDP-DRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGdweka 129

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 122166182 121 ----EQAVRQGDS------EIAEAWFNQ-----AAEYWKQAIALTPGN 153
Cdd:COG2956  130 ievlERLLKLGPEnahaycELAELYLEQgdydeAIEALEKALKLDPDC 177
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 42-153 3.78e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 3.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  42 GMSAQSEGNYAEALQNYYEAMRLeiDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGE 121
Cdd:COG4783   45 GEILLQLGDLDEAIVLLHEALEL--DP-DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121

                         90       100       110
                 ....*....|....*....|....*....|..
gi 122166182 122 QAvrqgdseiaeawfnQAAEYWKQAIALTPGN 153
Cdd:COG4783  122 PD--------------EAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-141 5.71e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 5.71e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  30 VGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAF 109
Cdd:COG2956  139 LGPENAHAYCELAELYLEQGDYDEAIEALEKA--LKLDP-DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL 215

                         90       100       110
                 ....*....|....*....|....*....|..
gi 122166182 110 NNMAVICHyrgeqavRQGDSEIAEAWFNQAAE 141
Cdd:COG2956  216 PRLAELYE-------KLGDPEEALELLRKALE 240
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-162 2.31e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 2.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG2956    8 ALGWYFKGLNYLLNGQPDKAIDLLEEA--LELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 122166182 115 IchYRgeqavRQGDseiaeawFNQAAEYWKQAIALTPGN----------YIQAQNWLK 162
Cdd:COG2956   85 D--YL-----KAGL-------LDRAEELLEKLLELDPDDaealrllaeiYEQEGDWEK 128
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
81-162 9.69e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 9.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRG--EQAVR-----QGDSEIAEAWFNQAAEYWKQaialtpGN 153
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGryDEAIAlekalKLDPNNAEALLNLAELLLEL------GD 74


                 ....*....
gi 122166182 154 YIQAQNWLK 162
Cdd:COG3063   75 YDEALAYLE 83
TPR_1 pfam00515
Tetratricopeptide repeat;
72-103 1.53e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 1.53e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 122166182   72 SYILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 38-151 2.92e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 2.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  38 YYRDGMSAQSEGNYAEALQnYYEAMrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIch 117
Cdd:COG2956  113 LRLLAEIYEQEGDWEKAIE-VLERL-LKLGPEN-AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL-- 187

                         90       100       110
                 ....*....|....*....|....*....|....
gi 122166182 118 yrgeqAVRQGDseiaeawFNQAAEYWKQAIALTP 151
Cdd:COG2956  188 -----YLEQGD-------YEEAIAALERALEQDP 209
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 38-108 5.42e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 5.42e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 122166182  38 YYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 108
Cdd:COG1729   33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 30-156 1.17e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   30 VGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDP-YDRSYIlyNIGLIHTSNGEHTKALEYYFRALERNPflpqa 108
Cdd:TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELDPrVTQSYI--KRASMNLELGDPDKAEEDFDKALKLNS----- 396

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 122166182  109 fNNMAVICHyRGEQAVRQGDseiaeawFNQAAEYWKQAIALTPGN---YIQ 156
Cdd:TIGR00990 397 -EDPDIYYH-RAQLHFIKGE-------FAQAGKDYQKSIDLDPDFifsHIQ 438
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 42-106 1.25e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.47  E-value: 1.25e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 122166182   42 GMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLP 106
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-103 1.29e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.29e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 122166182    74 ILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 51-153 1.31e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEqavrqgdse 130
Cdd:COG5010   33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD--------- 103

                         90       100
                 ....*....|....*....|...
gi 122166182 131 iaeawFNQAAEYWKQAIALTPGN 153
Cdd:COG5010  104 -----KDEAKEYYEKALALSPDN 121
TPR_12 pfam13424
Tetratricopeptide repeat;
35-101 1.81e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.14  E-value: 1.81e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 122166182   35 AFTYYRDGMSAQSEGNYAEALQNYYEAMRL---EIDPYDRSY--ILYNIGLIHTSNGEHTKALEYYFRALER 101
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrLLGPDHPLTatTLLNLGRLYLELGRYEEALELLERALAL 74
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
33-107 4.80e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 4.80e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 122166182  33 KEAFTYYRDGMSAQSEGNYAEALQnYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQ 107
Cdd:COG3063   24 DNADALNNLGLLLLEQGRYDEAIA-LEKA--LKLDP-NNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-141 5.29e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.33  E-value: 5.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFnnmavichYRGE 121
Cdd:COG2956  185 AELYLEQGDYEEAIAALERA--LEQDP-DYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL--------ALAD 253

                         90       100
                 ....*....|....*....|
gi 122166182 122 QAVRQGDSEIAEAWFNQAAE 141
Cdd:COG2956  254 LLERKEGLEAALALLERQLR 273
TPR_12 pfam13424
Tetratricopeptide repeat;
70-145 5.44e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 5.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   70 DRSYILYNIGLIHTSNGEHTKALEYYFRALER--------NPFLPQAFNNMAVICHyrgeqavRQGDSEIAEAWFNQAAE 141
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYL-------ELGRYEEALELLERALA 73


                  ....
gi 122166182  142 YWKQ 145
Cdd:pfam13424  74 LAEK 77
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 33-153 7.40e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.91  E-value: 7.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILyniGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNM 112
Cdd:TIGR02917 259 NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLA---GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLL 335

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 122166182  113 AVICHYRGE--QAVRQ------------------GDSEIAEAWFNQAAEYWKQAIALTPGN 153
Cdd:TIGR02917 336 ASIQLRLGRvdEAIATlspalgldpddpaalsllGEAYLALGDFEKAAEYLAKATELDPEN 396
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 48-141 1.19e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.89  E-value: 1.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  48 EGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNP---FLPQAFNNMAVIchyrgeqAV 124
Cdd:COG1729    6 AGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLS-------YL 78

                         90
                 ....*....|....*..
gi 122166182 125 RQGDSEIAEAWFNQAAE 141
Cdd:COG1729   79 ELGDYDKARATLEELIK 95
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
35-148 2.26e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 37.20  E-value: 2.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG4785  107 AEAYNNRGLAYLLLGDYDAALEDFDRA--LELDP-DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYL 183

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 122166182 115 IchyRGEQAVRQGDSEIAEAWFNQ---------AAEYWKQAIA 148
Cdd:COG4785  184 A---ERKLDPEKALALLLEDWATAyllqgdteeARELFKLALA 223
EST1_DNA_bind pfam10373
Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the ...
 76-115 5.32e-03

Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the site of polymerization. This is the DNA/RNA binding domain of EST1.


Pssm-ID: 431239  Cd Length: 279  Bit Score: 36.24  E-value: 5.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 122166182   76 YN-IGLIHTSNGEHTKALEYYFRAL-ERNPFlPQAFNNMAVI 115
Cdd:pfam10373  19 YNqLGVIALYVGNHLDAVYYFLRSLlSRNPF-PTAKNNLELL 59
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 42-149 5.42e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 36.60  E-value: 5.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122166182   42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPflpqafNNMAVICHYRGE 121
Cdd:TIGR02917 472 GAIYLGKGDLAKAREAFEKA--LSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP------KNLRAILALAGL 542

                          90       100
                  ....*....|....*....|....*...
gi 122166182  122 QAvRQGDSEIAEAWFNQAAEYWKQAIAL 149
Cdd:TIGR02917 543 YL-RTGNEEEAVAWLEKAAELNPQEIEP 569
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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