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Conserved domains on  [gi|123070305|sp|Q1BA97|]
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RecName: Full=Ribosome maturation factor RimP

Protein Classification

ribosome maturation factor RimP( domain architecture ID 10011230)

ribosome maturation factor rimp is important for maturation of 30S ribosome subunits

Gene Symbol:  rimP
Gene Ontology:  GO:0000028|GO:0042274|GO:0006412
PubMed:  19150615

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 10-172 6.67e-42

ribosome maturation protein RimP; Reviewed


:

Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 138.01  E-value: 6.67e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  10 TGLPSQEQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLDRVDESGpgvtadaAT 89
Cdd:PRK00092   1 MMSPLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIP-------GA 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  90 YVLEVTSPGVDRPLTTEKHYRRARGRKVELTLS----DGSQLTGRIGAltADGESVSLVVREGAranfSVRELPLEGIVK 165
Cdd:PRK00092  74 YTLEVSSPGLDRPLKKARDFRRFIGREVKVKLYepidGRKKFQGILLA--VDGETVTLEVEGKE----KEVEIPLDNIAK 147


                 ....*..
gi 123070305 166 AVVQVEF 172
Cdd:PRK00092 148 ARLVVEF 154
 
Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 10-172 6.67e-42

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 138.01  E-value: 6.67e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  10 TGLPSQEQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLDRVDESGpgvtadaAT 89
Cdd:PRK00092   1 MMSPLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIP-------GA 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  90 YVLEVTSPGVDRPLTTEKHYRRARGRKVELTLS----DGSQLTGRIGAltADGESVSLVVREGAranfSVRELPLEGIVK 165
Cdd:PRK00092  74 YTLEVSSPGLDRPLKKARDFRRFIGREVKVKLYepidGRKKFQGILLA--VDGETVTLEVEGKE----KEVEIPLDNIAK 147


                 ....*..
gi 123070305 166 AVVQVEF 172
Cdd:PRK00092 148 ARLVVEF 154
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
16-172 1.14e-34

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 119.46  E-value: 1.14e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  16 EQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLDRVDesgpgVTADAatYVLEVT 95
Cdd:COG0779    6 ERLEELLEPVLEELGLELVDVEVVKEGKRWVLRVYIDKDGGVTLDDCAAVSRALSAVLDVED-----PIPGA--YTLEVS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  96 SPGVDRPLTTEKHYRRARGRKVELTLSD----GSQLTGRIGAltADGESVSLVVREGaranfsVRELPLEGIVKAVVQVE 171
Cdd:COG0779   79 SPGLDRPLKKPRDFERFIGRLVKVKLREpidgRKKFTGRLLG--VDDDGVTLEVDGK------EVEIPLDDIAKARLVIE 150


                 .
gi 123070305 172 F 172
Cdd:COG0779  151 F 151
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 98-172 1.72e-12

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 59.77  E-value: 1.72e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 123070305  98 GVDRPLTTEKHYRRARGRKVELTLSD----GSQLTGRIgaLTADGESVSLVVREGAranfsVRELPLEGIVKAVVQVEF 172
Cdd:cd01734    1 GLDRPLKKPEDFERFIGKEVKVKLKEpidgRKKFTGEL--LGVDDDTVTLEVDDGK-----EVEIPFDNIAKARLVPEF 72
DUF150_C pfam17384
RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.
 103-172 2.54e-06

RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.


Pssm-ID: 465408  Cd Length: 67  Bit Score: 43.38  E-value: 2.54e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 123070305  103 LTTEKHYRRARGRKVELTLS----DGSQLTGRIGAltADGESVSLVVRegaraNFSVRELPLEGIVKAVVQVEF 172
Cdd:pfam17384   1 LFTAEHFARFIGELVKVKLKlpidGRKKFQGKIVA--VDGETITLEVD-----GKTEVTIPFDDIDKARLVPEF 67
 
Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 10-172 6.67e-42

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 138.01  E-value: 6.67e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  10 TGLPSQEQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLDRVDESGpgvtadaAT 89
Cdd:PRK00092   1 MMSPLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIP-------GA 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  90 YVLEVTSPGVDRPLTTEKHYRRARGRKVELTLS----DGSQLTGRIGAltADGESVSLVVREGAranfSVRELPLEGIVK 165
Cdd:PRK00092  74 YTLEVSSPGLDRPLKKARDFRRFIGREVKVKLYepidGRKKFQGILLA--VDGETVTLEVEGKE----KEVEIPLDNIAK 147


                 ....*..
gi 123070305 166 AVVQVEF 172
Cdd:PRK00092 148 ARLVVEF 154
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
16-172 1.14e-34

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 119.46  E-value: 1.14e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  16 EQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLDRVDesgpgVTADAatYVLEVT 95
Cdd:COG0779    6 ERLEELLEPVLEELGLELVDVEVVKEGKRWVLRVYIDKDGGVTLDDCAAVSRALSAVLDVED-----PIPGA--YTLEVS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  96 SPGVDRPLTTEKHYRRARGRKVELTLSD----GSQLTGRIGAltADGESVSLVVREGaranfsVRELPLEGIVKAVVQVE 171
Cdd:COG0779   79 SPGLDRPLKKPRDFERFIGRLVKVKLREpidgRKKFTGRLLG--VDDDGVTLEVDGK------EVEIPLDDIAKARLVIE 150


                 .
gi 123070305 172 F 172
Cdd:COG0779  151 F 151
PRK02001 PRK02001
ribosome assembly cofactor RimP;
16-168 1.99e-14

ribosome assembly cofactor RimP;


Pssm-ID: 179358 [Multi-domain]  Cd Length: 152  Bit Score: 67.31  E-value: 1.99e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  16 EQVKELLDGEFARAGyeiENVVIDGGARPP-RITVVVDGDRPLDLDTVASLSRSASEQLDRvdesgpgvtaDAATYVLEV 94
Cdd:PRK02001   4 KKVVELLVEELLEGP---ELFLVDLTISPDnKIVVEIDGDEGVWIEDCVELSRAIEHNLDR----------EEEDFELEV 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  95 TSPGVDRPLTTEKHYRRARGRKVELTLSDGSQLTGRIgaLTADGESVSLVVR-----EGARANFSVRE---LPLEGIVKA 166
Cdd:PRK02001  71 GSAGLTSPLKVPRQYKKNIGRELEVLTKNGKKIEGEL--KSADENDITLEVKarepkEGGKGKVTVEKeetITYDDIKEA 148


                 ..
gi 123070305 167 VV 168
Cdd:PRK02001 149 KV 150
PRK14645 PRK14645
ribosome maturation factor RimP;
17-145 3.99e-14

ribosome maturation factor RimP;


Pssm-ID: 184780 [Multi-domain]  Cd Length: 154  Bit Score: 66.33  E-value: 3.99e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  17 QVKELLDGEFARAGYEIENVVIDGGARPPRITVVVD--GDRPLDLDTVASLSRSASEQLDRVDesgpgvtADAATYVLEV 94
Cdd:PRK14645  10 DLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDrkDEQPVTVEDLERASRALEAELDRLD-------PIEGEYRLEV 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 123070305  95 TSPGVDRPLTTEKHYRRARGRKVELTlSDGSQLTGRIGALtaDGESVSLVV 145
Cdd:PRK14645  83 ESPGPKRPLFTARHFERFAGLKAKVR-GPGENFTGRIKAV--SGDQVTFDV 130
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 98-172 1.72e-12

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 59.77  E-value: 1.72e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 123070305  98 GVDRPLTTEKHYRRARGRKVELTLSD----GSQLTGRIgaLTADGESVSLVVREGAranfsVRELPLEGIVKAVVQVEF 172
Cdd:cd01734    1 GLDRPLKKPEDFERFIGKEVKVKLKEpidgRKKFTGEL--LGVDDDTVTLEVDDGK-----EVEIPFDNIAKARLVPEF 72
PRK14647 PRK14647
ribosome maturation factor RimP;
4-172 1.41e-11

ribosome maturation factor RimP;


Pssm-ID: 173110 [Multi-domain]  Cd Length: 159  Bit Score: 59.76  E-value: 1.41e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305   4 EPKLRPTGLpsqeqvkELLDGEFARAGyeienvvidggaRPPRITVVVDGDRPLDLDTVASLSRSASEQLDRVDesgpgv 83
Cdd:PRK14647  15 EQVLSSLGL-------ELVELEYKREG------------REMVLRLFIDKEGGVNLDDCAEVSRELSEILDVED------ 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  84 tADAATYVLEVTSPGVDRPLTTEKHYRRARGRKVEL----TLSD--GSQLTGRIGALT--ADGEsVSLVVREGARAnfsv 155
Cdd:PRK14647  70 -FIPERYTLEVSSPGLDRPLKKEADYERYAGRLVKVrtfeLLADeaGNKRKTFLGELEglADGV-VTIALKEGQQA---- 143

                        170
                 ....*....|....*..
gi 123070305 156 rELPLEGIVKAVVQVEF 172
Cdd:PRK14647 144 -RIPLDKIAKANLEFEF 159
PRK14640 PRK14640
hypothetical protein; Provisional
 15-145 1.61e-09

hypothetical protein; Provisional


Pssm-ID: 173103 [Multi-domain]  Cd Length: 152  Bit Score: 54.24  E-value: 1.61e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  15 QEQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLDRVDEsgpgVTADaatYVLEV 94
Cdd:PRK14640   5 EQRLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDP----ITEE---YYLEV 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 123070305  95 TSPGVDRPLTTEKHYRRARGRKVELTL----SDGSQLTGRIGALtaDGESVSLVV 145
Cdd:PRK14640  78 SSPGLDRPLFKVAQFEKYVGQEAAVTLrmatNNRRKFKGVIKAV--QGDMITLTV 130
PRK14639 PRK14639
ribosome maturation factor RimP;
46-172 1.62e-08

ribosome maturation factor RimP;


Pssm-ID: 173102 [Multi-domain]  Cd Length: 140  Bit Score: 50.98  E-value: 1.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  46 RITVVVDGDrpLDLDTVASLSRSASEQLDRVdesgPGVTADaatYVLEVTSPGVDRPLTTEKHYRRARGRKVELTLSDGS 125
Cdd:PRK14639  29 RVYITKEGG--VNLDDCERLSELLSPIFDVE----PPVSGE---YFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKE 99

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 123070305 126 QLTGRIgaLTADGESVSLVVREgaraNFSVRELPLEGIVKAVVQVEF 172
Cdd:PRK14639 100 KFEGKI--VSVDDENITLENLE----NKEKTTINFNDIKKAKTYVEW 140
PRK14638 PRK14638
ribosome maturation factor RimP;
89-172 3.32e-08

ribosome maturation factor RimP;


Pssm-ID: 184777 [Multi-domain]  Cd Length: 150  Bit Score: 50.63  E-value: 3.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  89 TYVLEVTSPGVDRPLTTEKHYRRARGRKVELTLSDGSQLTGRIGALTADGESVSlvvREGARANFSVrelplEGIVKAVV 168
Cdd:PRK14638  75 SYTLEVSSPGLDRPLRGPKDYVRFTGKLAKIVTKDGKTFIGRIESFVDGTITIS---DEKEKYEINI-----DDVKRANL 146


                 ....
gi 123070305 169 QVEF 172
Cdd:PRK14638 147 EVEF 150
PRK14636 PRK14636
ribosome maturation protein RimP;
20-166 5.28e-08

ribosome maturation protein RimP;


Pssm-ID: 237773 [Multi-domain]  Cd Length: 176  Bit Score: 50.55  E-value: 5.28e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  20 ELLDGEFARAGYEIENVVIDGGARPPriTVVVDGDRP----LDLDTVASLSRSASEQLDRVDEsgpgvTADAatYVLEVT 95
Cdd:PRK14636   9 ALIEPEAKALGLDLVRVAMFGGKSDP--TLQIMAERPdtrqLVIEDCAALSRRLSDVFDELDP-----IEDA--YRLEVS 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 123070305  96 SPGVDRPLTTEKHYRRARGR--KVELT--LSDGSQLTGRIGALtaDGESVSLVVREGAranfsVRELPLEGIVKA 166
Cdd:PRK14636  80 SPGIDRPLTRPKDFADWAGHeaRIALSepLDGRKQFRGELKGI--DGDTVTIADNKAG-----EVILPFAAIESA 147
PRK14641 PRK14641
ribosome maturation factor RimP;
36-171 1.71e-07

ribosome maturation factor RimP;


Pssm-ID: 173104 [Multi-domain]  Cd Length: 173  Bit Score: 49.00  E-value: 1.71e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  36 VVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLDrVDESGPGVTADaaTYVLEVTSPGVDRPLTTEKHYRRARGR 115
Cdd:PRK14641  29 MTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLE-EDEELLGLVGE--DFDLMVSSPGLGEPIILPRQYGRHVGR 105

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 123070305 116 KVELTLSDGSQ----LTGRIGA-LTADGESVSLVV------REGARANFSVRELPLEGIVKAVVQVE 171
Cdd:PRK14641 106 LLRVTYRDEEGseheVTGHLQEvSLTEGEGASIVLkpeqkkKKGKQEETENITLELDAVIRAVPEAE 172
DUF150_C pfam17384
RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.
 103-172 2.54e-06

RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.


Pssm-ID: 465408  Cd Length: 67  Bit Score: 43.38  E-value: 2.54e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 123070305  103 LTTEKHYRRARGRKVELTLS----DGSQLTGRIGAltADGESVSLVVRegaraNFSVRELPLEGIVKAVVQVEF 172
Cdd:pfam17384   1 LFTAEHFARFIGELVKVKLKlpidGRKKFQGKIVA--VDGETITLEVD-----GKTEVTIPFDDIDKARLVPEF 67
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 27-100 4.65e-05

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 39.89  E-value: 4.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 123070305   27 ARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLDRVDESGPGvtadaatYVLEVTSPGVD 100
Cdd:pfam02576   7 ESLGFELVDVEFVKEGGGWTLRIYIDKDGGVTIDDCAKVSRAISAVLDVEDPISGE-------YTLEVSSPGLD 73
PRK14632 PRK14632
ribosome maturation factor RimP;
37-122 9.75e-05

ribosome maturation factor RimP;


Pssm-ID: 173095 [Multi-domain]  Cd Length: 172  Bit Score: 41.21  E-value: 9.75e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  37 VIDGGARPPRitVVVDGDRPLDLDTVASLSRSASEQLDRVDesgpgVTADAatYVLEVTSPGVDRPLTTEKHYRRARGRK 116
Cdd:PRK14632  30 LSYGGRTVVR--LFVDGPEGVTIDQCAEVSRHVGLALEVED-----VISSA--YVLEVSSPGLERPFFRAEQMSPYVGRQ 100


                 ....*.
gi 123070305 117 VELTLS 122
Cdd:PRK14632 101 IELTLI 106
PRK14642 PRK14642
ribosome maturation factor RimP;
86-133 5.31e-04

ribosome maturation factor RimP;


Pssm-ID: 237775 [Multi-domain]  Cd Length: 197  Bit Score: 39.07  E-value: 5.31e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 123070305  86 DAATYV-LEVTSPGVDRPLTTEKHYRRARGRKVELTLSD--GSQLTGRIGA 133
Cdd:PRK14642  71 DGVDYKrLEVSSPGIDRPLRHEQDFERFAGEVIDITLKApiGAAAGGQVSA 121
PRK14631 PRK14631
ribosome maturation factor RimP;
87-152 4.37e-03

ribosome maturation factor RimP;


Pssm-ID: 237772 [Multi-domain]  Cd Length: 174  Bit Score: 36.41  E-value: 4.37e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123070305  87 AATYVLEVTSPGVDRPLTTEKHYRRARGRKVELTL----SDGSQLTGRIGALTADGESVSLVVREGARAN 152
Cdd:PRK14631  90 SGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLiaavENRRKFQAKLLAVDLENEEIQVEVEGKHVLD 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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