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Conserved domains on  [gi|334302880|sp|Q7Z6I6|]
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RecName: Full=Rho GTPase-activating protein 30; AltName: Full=Rho-type GTPase-activating protein 30

Protein Classification

Rho GTPase-activating protein( domain architecture ID 10138166)

Rho GTPase-activating protein for Rho/Rac/Cdc42-like small GTPases that act as molecular switches, active in their GTP-bound form but inactive when bound to GDP

CATH:  1.10.555.10
Gene Ontology:  GO:0007165|GO:0005096
PubMed:  17222083|12480336
SCOP:  4001255

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RhoGAP_CdGAP cd04384
RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 16-210 9.16e-109

RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


:

Pssm-ID: 239849 [Multi-domain]  Cd Length: 195  Bit Score: 337.17  E-value: 9.16e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   16 RVFGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGVVDGIYRLSGVSSNIQKLRQEFESERKPDLRRDVYLQDIHCVSSLCK 95
Cdd:cd04384     1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGIVDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   96 AYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAP 175
Cdd:cd04384    81 LYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAP 160

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 334302880  176 NLLRSKDIEASGFNGTAAFMEVRVQSIVVEFILTH 210
Cdd:cd04384   161 NLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195
2A1904 super family cl36772
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 673-887 2.19e-08

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


The actual alignment was detected with superfamily member TIGR00927:

Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 58.47  E-value: 2.19e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   673 EEAEGSPETKVEAGKASEDRGEAGGSQETKVRL---------REGSRE---ETEAKEEKSKGQKKADSMEAKGVEEPGGD 740
Cdd:TIGR00927  647 EEGERPTEAEGENGEESGGEAEQEGETETKGENesegeipaeRKGEQEgegEIEAKEADHKGETEAEEVEHEGETEAEGT 726

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   741 EYTDEKEKEIEREEDEQREEAQVEAGRDLEQGAQEDQVAeekwevVQKQEAEGVREDEDKGQREKGyhEARKDQGDGEDS 820
Cdd:TIGR00927  727 EDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETE------HEGETEAEGKEDEDEGEIQAG--EDGEMKGDEGAE 798

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   821 RSPEAATEGGAGEvSKERESGDGEAEGDQRAGGYYLEEDTLSEGSGVASLE---VDCAKEGNPHSSEMEE 887
Cdd:TIGR00927  799 GKVEHEGETEAGE-KDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDekgVDGGGGSDGGDSEEEE 867
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
332-413 9.84e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 9.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  332 SAAAGASDEPEGlvgPSSPRPSPLLPESLENDSIEAAEGEQEPEAEALGGTNSEPGTPRAGRSAIRAGGSSRA---ERCA 408
Cdd:PRK07003  483 DAPPDAAFEPAP---RAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAldvLRNA 559


                  ....*
gi 334302880  409 GVHIS 413
Cdd:PRK07003  560 GMRVS 564
 
Name Accession Description Interval E-value
RhoGAP_CdGAP cd04384
RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 16-210 9.16e-109

RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239849 [Multi-domain]  Cd Length: 195  Bit Score: 337.17  E-value: 9.16e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   16 RVFGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGVVDGIYRLSGVSSNIQKLRQEFESERKPDLRRDVYLQDIHCVSSLCK 95
Cdd:cd04384     1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGIVDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   96 AYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAP 175
Cdd:cd04384    81 LYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAP 160

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 334302880  176 NLLRSKDIEASGFNGTAAFMEVRVQSIVVEFILTH 210
Cdd:cd04384   161 NLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195
RhoGAP smart00324
GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac ...
 31-211 6.04e-56

GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.


Pssm-ID: 214618  Cd Length: 174  Bit Score: 191.33  E-value: 6.04e-56
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880     31 QEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERKPDLrrDVYLQDIHCVSSLCKAYFRELPDPLLTYR 109
Cdd:smart00324    1 KPIPIIVEKCIEYLEKRGLdTEGIYRVSGSKSRVKELRDAFDSGPDPDL--DLSEYDVHDVAGLLKLFLRELPEPLITYE 78

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880    110 LYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDieasgfN 189
Cdd:smart00324   79 LYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPD------G 152

                           170       180
                    ....*....|....*....|..
gi 334302880    190 GTAAFMEVRVQSIVVEFILTHV 211
Cdd:smart00324  153 EVASLKDIRHQNTVIEFLIENA 174
RhoGAP pfam00620
RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.
 34-182 1.12e-53

RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.


Pssm-ID: 459875  Cd Length: 148  Bit Score: 183.90  E-value: 1.12e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880    34 PQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERKPDLrrDVYLQDIHCVSSLCKAYFRELPDPLLTYRLYD 112
Cdd:pfam00620    1 PLIVRKCVEYLEKRGLdTEGIFRVSGSASRIKELREAFDRGPDVDL--DLEEEDVHVVASLLKLFLRELPEPLLTFELYE 78

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   113 KFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKD 182
Cdd:pfam00620   79 EFIEAAKLPDEEERLEALRELLRKLPPANRDTLRYLLAHLNRVAQNSDVNKMNAHNLAIVFGPTLLRPPD 148
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 673-887 2.19e-08

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 58.47  E-value: 2.19e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   673 EEAEGSPETKVEAGKASEDRGEAGGSQETKVRL---------REGSRE---ETEAKEEKSKGQKKADSMEAKGVEEPGGD 740
Cdd:TIGR00927  647 EEGERPTEAEGENGEESGGEAEQEGETETKGENesegeipaeRKGEQEgegEIEAKEADHKGETEAEEVEHEGETEAEGT 726

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   741 EYTDEKEKEIEREEDEQREEAQVEAGRDLEQGAQEDQVAeekwevVQKQEAEGVREDEDKGQREKGyhEARKDQGDGEDS 820
Cdd:TIGR00927  727 EDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETE------HEGETEAEGKEDEDEGEIQAG--EDGEMKGDEGAE 798

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   821 RSPEAATEGGAGEvSKERESGDGEAEGDQRAGGYYLEEDTLSEGSGVASLE---VDCAKEGNPHSSEMEE 887
Cdd:TIGR00927  799 GKVEHEGETEAGE-KDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDekgVDGGGGSDGGDSEEEE 867
PTZ00121 PTZ00121
MAEBL; Provisional
 673-851 2.33e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 2.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  673 EEAEGSPETKVEAGKASEDRGEAGGSQETKVRLR-EGSREETEAKEEKSKGQKKADSMEAKGVEEPGGDEYTDEKEKEIE 751
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKkEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  752 REEDEQREEAQVEAGRDLEQGAQEDQVAEEkwevvQKQEAEGVREDEDKGQREKGYHEARKDQGDGEDSRSPEAATEgGA 831
Cdd:PTZ00121 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADE-----AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK-KA 1492

                         170       180
                  ....*....|....*....|
gi 334302880  832 GEVSKERESGDGEAEGDQRA 851
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKA 1512
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
332-413 9.84e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 9.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  332 SAAAGASDEPEGlvgPSSPRPSPLLPESLENDSIEAAEGEQEPEAEALGGTNSEPGTPRAGRSAIRAGGSSRA---ERCA 408
Cdd:PRK07003  483 DAPPDAAFEPAP---RAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAldvLRNA 559


                  ....*
gi 334302880  409 GVHIS 413
Cdd:PRK07003  560 GMRVS 564
 
Name Accession Description Interval E-value
RhoGAP_CdGAP cd04384
RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 16-210 9.16e-109

RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239849 [Multi-domain]  Cd Length: 195  Bit Score: 337.17  E-value: 9.16e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   16 RVFGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGVVDGIYRLSGVSSNIQKLRQEFESERKPDLRRDVYLQDIHCVSSLCK 95
Cdd:cd04384     1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGIVDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   96 AYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAP 175
Cdd:cd04384    81 LYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAP 160

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 334302880  176 NLLRSKDIEASGFNGTAAFMEVRVQSIVVEFILTH 210
Cdd:cd04384   161 NLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195
RhoGAP smart00324
GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac ...
 31-211 6.04e-56

GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.


Pssm-ID: 214618  Cd Length: 174  Bit Score: 191.33  E-value: 6.04e-56
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880     31 QEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERKPDLrrDVYLQDIHCVSSLCKAYFRELPDPLLTYR 109
Cdd:smart00324    1 KPIPIIVEKCIEYLEKRGLdTEGIYRVSGSKSRVKELRDAFDSGPDPDL--DLSEYDVHDVAGLLKLFLRELPEPLITYE 78

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880    110 LYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDieasgfN 189
Cdd:smart00324   79 LYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPD------G 152

                           170       180
                    ....*....|....*....|..
gi 334302880    190 GTAAFMEVRVQSIVVEFILTHV 211
Cdd:smart00324  153 EVASLKDIRHQNTVIEFLIENA 174
RhoGAP pfam00620
RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.
 34-182 1.12e-53

RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.


Pssm-ID: 459875  Cd Length: 148  Bit Score: 183.90  E-value: 1.12e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880    34 PQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERKPDLrrDVYLQDIHCVSSLCKAYFRELPDPLLTYRLYD 112
Cdd:pfam00620    1 PLIVRKCVEYLEKRGLdTEGIFRVSGSASRIKELREAFDRGPDVDL--DLEEEDVHVVASLLKLFLRELPEPLLTFELYE 78

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   113 KFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKD 182
Cdd:pfam00620   79 EFIEAAKLPDEEERLEALRELLRKLPPANRDTLRYLLAHLNRVAQNSDVNKMNAHNLAIVFGPTLLRPPD 148
RhoGAP cd00159
RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like ...
 34-210 3.43e-51

RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.


Pssm-ID: 238090 [Multi-domain]  Cd Length: 169  Bit Score: 177.88  E-value: 3.43e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   34 PQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERKPDLRRDVylqDIHCVSSLCKAYFRELPDPLLTYRLYD 112
Cdd:cd00159     1 PLIIEKCIEYLEKNGLnTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDY---DVHDVASLLKLYLRELPEPLIPFELYD 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  113 KFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDIEASgfngta 192
Cdd:cd00159    78 EFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSDDE------ 151

                         170
                  ....*....|....*...
gi 334302880  193 AFMEVRVQSIVVEFILTH 210
Cdd:cd00159   152 LLEDIKKLNEIVEFLIEN 169
RhoGAP_fRGD1 cd04398
RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 18-215 3.06e-43

RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239863  Cd Length: 192  Bit Score: 156.02  E-value: 3.06e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESErkPD----LRRDVYLQDIHCVSS 92
Cdd:cd04398     1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLnLEGIYRLSGNVSRVNKLKELFDKD--PLnvllISPEDYESDIHSVAS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   93 LCKAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIV 172
Cdd:cd04398    79 LLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAII 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 334302880  173 WAPNLLR--SKDIEASGFngtaafmevrvQSIVVEFILTHVDQLF 215
Cdd:cd04398   159 WGPTLMNaaPDNAADMSF-----------QSRVIETLLDNAYQIF 192
RhoGAP_ARHGAP27_15_12_9 cd04403
RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ...
 18-209 6.89e-42

RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239868 [Multi-domain]  Cd Length: 187  Bit Score: 151.77  E-value: 6.89e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERKPDLRrDVYLQDIHCVSSLCKA 96
Cdd:cd04403     1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLdVDGIYRVSGNLAVIQKLRFAVDHDEKLDLD-DSKWEDIHVITGALKL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   97 YFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPN 176
Cdd:cd04403    80 FFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159

                         170       180       190
                  ....*....|....*....|....*....|...
gi 334302880  177 LLRSKDiEASGFNGTAAFmevrvQSIVVEFILT 209
Cdd:cd04403   160 LLRPEQ-ETGNIAVHMVY-----QNQIVELILL 186
RhoGAP_nadrin cd04386
RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 16-219 1.70e-41

RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239851  Cd Length: 203  Bit Score: 151.07  E-value: 1.70e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   16 RVFGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGVVD-GIYRLSGVSSNIQKLRQEFESER-KPDLrrDVYLQDIHCVSSL 93
Cdd:cd04386     3 PVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEeGLFRVGGGASKLKRLKAALDAGTfSLPL--DEFYSDPHAVASA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   94 CKAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVW 173
Cdd:cd04386    81 LKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 334302880  174 APNLLRSKdIEASGFNGTAAfMEVRVqSIVVEFILTHVDQLFGGAA 219
Cdd:cd04386   161 APNLLWAK-NEGSLAEMAAG-TSVHV-VAIVELIISHADWFFPGEV 203
RhoGAP_chimaerin cd04372
RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 18-215 7.27e-36

RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239837 [Multi-domain]  Cd Length: 194  Bit Score: 134.95  E-value: 7.27e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGVV-DGIYRLSGVSSNIQKLRQEFESE-RKPDLRRDVYlQDIHCVSSLCK 95
Cdd:cd04372     1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQsEGLYRVSGFAEEIEDVKMAFDRDgEKADISATVY-PDINVITGALK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   96 AYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAP 175
Cdd:cd04372    80 LYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 334302880  176 NLLRSKDIEASgfngtAAFMEVRVQSIVVEFILTHVDQLF 215
Cdd:cd04372   160 TLMRPPEDSAL-----TTLNDMRYQILIVQLLITNEDVLF 194
RhoGAP_ARHGAP21 cd04395
RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 17-215 4.44e-35

RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239860  Cd Length: 196  Bit Score: 132.52  E-value: 4.44e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   17 VFGCDLQEHL-QHSGQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFEseRKP---DLRRDVYlQDIHCVS 91
Cdd:cd04395     1 TFGVPLDDCPpSSENPYVPLIVEVCCNIVEARGLeTVGIYRVPGNNAAISALQEELN--RGGfdiDLQDPRW-RDVNVVS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   92 SLCKAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAI 171
Cdd:cd04395    78 SLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAI 157

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 334302880  172 VWAPNLLRSKDIeasgfNGTAAFMEVRVQSIVVEFILTHVDQLF 215
Cdd:cd04395   158 VFGPTLVRTSDD-----NMETMVTHMPDQCKIVETLIQHYDWFF 196
RhoGAP_GMIP_PARG1 cd04378
RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 18-210 4.91e-34

RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239843  Cd Length: 203  Bit Score: 129.85  E-value: 4.91e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERkpDLrrdVYLQDI--HCVSSLC 94
Cdd:cd04378     1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALgVQGIYRVSGSKARVEKLCQAFENGK--DL---VELSELspHDISSVL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   95 KAYFRELPDPLLTYRLYDKF-------------AEAVGVQLEPER-LVKILEVLRELPVPNYRTLEFLMRHLVHMASFSA 160
Cdd:cd04378    76 KLFLRQLPEPLILFRLYNDFialakeiqrdteeDKAPNTPIEVNRiIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFE 155

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 334302880  161 QTNMHARNLAIVWAPNLLRSKDIEASgfNGTAAFMEVRVQSIVVEFILTH 210
Cdd:cd04378   156 ENKMSPNNLGIVFGPTLIRPRPGDAD--VSLSSLVDYGYQARLVEFLITN 203
RhoGAP_ARAP cd04385
RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present ...
 19-182 6.96e-33

RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239850  Cd Length: 184  Bit Score: 125.88  E-value: 6.96e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   19 GCDLQEhLQHSGQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFES-ERKPDLRRDVYlqDIHCVSSLCKA 96
Cdd:cd04385     2 GPALED-QQLTDNDIPVIVDKCIDFITQHGLmSEGIYRKNGKNSSVKKLLEAFRKdARSVQLREGEY--TVHDVADVLKR 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   97 YFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPN 176
Cdd:cd04385    79 FLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPT 158


                  ....*.
gi 334302880  177 LLRSKD 182
Cdd:cd04385   159 LFQTDE 164
RhoGAP_myosin_IX cd04377
RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 33-182 1.40e-32

RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239842  Cd Length: 186  Bit Score: 124.86  E-value: 1.40e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   33 VPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESErkPDlrrDVYLQD--IHCVSSLCKAYFRELPDPLLTYR 109
Cdd:cd04377    15 VPLVLEKLLEHIEMHGLyTEGIYRKSGSANKIKELRQGLDTD--PD---SVNLEDypIHVITSVLKQWLRELPEPLMTFE 89

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334302880  110 LYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKD 182
Cdd:cd04377    90 LYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPD 162
RhoGAP-p50rhoGAP cd04404
RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 18-215 9.77e-31

RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239869 [Multi-domain]  Cd Length: 195  Bit Score: 120.14  E-value: 9.77e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQeHLQHSGQE---VPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERkpdlrrDVYLQ---DIHCV 90
Cdd:cd04404     6 FGVSLQ-FLKEKNPEqepIPPVVRETVEYLQAHALtTEGIFRRSANTQVVKEVQQKYNMGE------PVDFDqyeDVHLP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   91 SSLCKAYFRELPDPLLTYRLYDKFAEAVGVQLEpERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLA 170
Cdd:cd04404    79 AVILKTFLRELPEPLLTFDLYDDIVGFLNVDKE-ERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLA 157

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 334302880  171 IVWAPNLLRSKDIEA--SGFNGTAAFmevrvqsivVEFILTHVDQLF 215
Cdd:cd04404   158 VVFGPNLLWAKDASMslSAINPINTF---------TKFLLDHQDEIF 195
RhoGAP_Bcr cd04387
RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr ...
 33-210 1.75e-30

RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239852 [Multi-domain]  Cd Length: 196  Bit Score: 119.26  E-value: 1.75e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   33 VPQVLKSCAEFVEEYGVVD-GIYRLSGVSSNIQKLRQEFESERKpDLRRDVYLQDIHCVSSLCKAYFRELPDPLLTYRLY 111
Cdd:cd04387    16 VPYIVRQCVEEVERRGMEEvGIYRISGVATDIQALKAAFDTNNK-DVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDELY 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  112 DKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDIEASGFNGT 191
Cdd:cd04387    95 PNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKESKIPTNT 174

                         170       180
                  ....*....|....*....|..
gi 334302880  192 AAF---MEVRVQSIVVEFILTH 210
Cdd:cd04387   175 MTDswsLEVMSQVQVLLYFLQL 196
RhoGAP_Graf cd04374
RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase ...
 35-210 2.09e-28

RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239839  Cd Length: 203  Bit Score: 113.64  E-value: 2.09e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   35 QVLKSCAEFVEEYGVVD-GIYRLSGVSSNIQKLRQEFESERKP---DLRRDVYLQDIHCVSSLCKAYFRELPDPLLTYRL 110
Cdd:cd04374    30 KFVRKCIEAVETRGINEqGLYRVVGVNSKVQKLLSLGLDPKTStpgDVDLDNSEWEIKTITSALKTYLRNLPEPLMTYEL 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  111 YDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDieasgfNG 190
Cdd:cd04374   110 HNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQE------ET 183

                         170       180
                  ....*....|....*....|
gi 334302880  191 TAAFMEVRVQSIVVEFILTH 210
Cdd:cd04374   184 VAAIMDIKFQNIVVEILIEN 203
RhoGap_RalBP1 cd04381
RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 18-217 1.87e-27

RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239846 [Multi-domain]  Cd Length: 182  Bit Score: 110.22  E-value: 1.87e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEHLQ----HSGQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERKPDLrrDVYlqDIHCVSS 92
Cdd:cd04381     1 FGASLSLAVErsrcHDGIDLPLVFRECIDYVEKHGMkCEGIYKVSGIKSKVDELKAAYNRRESPNL--EEY--EPPTVAS 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   93 LCKAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIV 172
Cdd:cd04381    77 LLKQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIV 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 334302880  173 WAPNllrskdieasgfngtaafmeVRVQSIVVEFILTHVDQLFGG 217
Cdd:cd04381   157 LSPT--------------------VQISNRLLYALLTHCQELFGN 181
RhoGAP_myosin_IXB cd04407
RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 33-182 2.96e-27

RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239872 [Multi-domain]  Cd Length: 186  Bit Score: 109.70  E-value: 2.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   33 VPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESErkPDlrrDVYLQD--IHCVSSLCKAYFRELPDPLLTYR 109
Cdd:cd04407    15 VPIVLEKLLEHVEMHGLyTEGIYRKSGSANRMKELHQLLQAD--PE---NVKLENypIHAITGLLKQWLRELPEPLMTFA 89

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334302880  110 LYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKD 182
Cdd:cd04407    90 QYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPD 162
RhoGAP_PARG1 cd04409
RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 18-210 5.80e-27

RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239874  Cd Length: 211  Bit Score: 109.90  E-value: 5.80e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERkpDLrrdVYLQDI--HCVSSLC 94
Cdd:cd04409     1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALcLKGIYRVNGAKSRVEKLCQAFENGK--DL---VELSELspHDISNVL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   95 KAYFRELPDPLLTYRLYDKF---------------------AEAVGVQLEPER-LVKILEVLRELPVPNYRTLEFLMRHL 152
Cdd:cd04409    76 KLYLRQLPEPLILFRLYNEFiglakesqhvnetqeakknsdKKWPNMCTELNRiLLKSKDLLRQLPAPNYNTLQFLIVHL 155

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 334302880  153 VHMASFSAQTNMHARNLAIVWAPNLLRSKDIEASgfNGTAAFMEVRVQSIVVEFILTH 210
Cdd:cd04409   156 HRVSEQAEENKMSASNLGIIFGPTLIRPRPTDAT--VSLSSLVDYPHQARLVELLITY 211
RhoGAP_p190 cd04373
RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 18-207 8.43e-27

RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239838  Cd Length: 185  Bit Score: 108.31  E-value: 8.43e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEhLQHSGQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERKPDL-RRDVylqDIHCVSSLCK 95
Cdd:cd04373     1 FGVPLAN-VVTSEKPIPIFLEKCVEFIEATGLeTEGIYRVSGNKTHLDSLQKQFDQDHNLDLvSKDF---TVNAVAGALK 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   96 AYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAP 175
Cdd:cd04373    77 SFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWP 156

                         170       180       190
                  ....*....|....*....|....*....|..
gi 334302880  176 NLLRSKDIEASGFNGTAAFmevrvQSIVVEFI 207
Cdd:cd04373   157 TLMRPDFTSMEALSATRIY-----QTIIETFI 183
RhoGAP_ARHGAP22_24_25 cd04390
RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ...
 17-181 1.29e-26

RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239855 [Multi-domain]  Cd Length: 199  Bit Score: 108.30  E-value: 1.29e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   17 VFGCDLQEHLQHS---GQE-VPQVLKSCAEFVEEYGVVD-GIYRLSGVSSNIQKLRQEFESERKPDLRRDVylqDIHCVS 91
Cdd:cd04390     2 VFGQRLEDTVAYErkfGPRlVPILVEQCVDFIREHGLKEeGLFRLPGQANLVKQLQDAFDAGERPSFDSDT---DVHTVA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   92 SLCKAYFRELPDPLLTYRLYDKFAEAVGVQL--EPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNL 169
Cdd:cd04390    79 SLLKLYLRELPEPVIPWAQYEDFLSCAQLLSkdEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNL 158

                         170
                  ....*....|..
gi 334302880  170 AIVWAPNLLRSK 181
Cdd:cd04390   159 ATVFGPNILRPK 170
RhoGAP_ARHGAP6 cd04376
RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 32-215 1.48e-25

RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239841  Cd Length: 206  Bit Score: 105.60  E-value: 1.48e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   32 EVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFeserkpDLRRDVYLQDIHC---VSSLCKAYFRELPDPLLT 107
Cdd:cd04376     8 QVPRLVESCCQHLEKHGLqTVGIFRVGSSKKRVRQLREEF------DRGIDVVLDENHSvhdVAALLKEFFRDMPDPLLP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  108 YRLYDKFAEAVGVQLEpERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQT-----------NMHARNLAIVWAPN 176
Cdd:cd04376    82 RELYTAFIGTALLEPD-EQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSidedgqevsgnKMTSLNLATIFGPN 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 334302880  177 LLRSKDIEASGFNGTAAFMEVRVQSI-VVEFILTHVDQLF 215
Cdd:cd04376   161 LLHKQKSGEREFVQASLRIEESTAIInVVQTMIDNYEELF 200
RhoGAP_fBEM3 cd04400
RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of ...
 17-177 2.39e-25

RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239865 [Multi-domain]  Cd Length: 190  Bit Score: 104.36  E-value: 2.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   17 VFGCDLQEHLQHSGQE-----VPQVLKSCAEFVEEYGVV--DGIYRLSGVSSNIQKLRQEFESERKPDLRRDVYLQDIHC 89
Cdd:cd04400     1 IFGSPLEEAVELSSHKyngrdLPSVVYRCIEYLDKNRAIyeEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   90 VSSLCKAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKIL-EVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARN 168
Cdd:cd04400    81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELkDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160


                  ....*....
gi 334302880  169 LAIVWAPNL 177
Cdd:cd04400   161 VCIVFSPTL 169
RhoGAP_GMIP cd04408
RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP ...
 18-210 8.24e-25

RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239873  Cd Length: 200  Bit Score: 103.36  E-value: 8.24e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERkpDLrrdVYLQDI--HCVSSLC 94
Cdd:cd04408     1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALgVQGIYRISGSKARVEKLCQAFENGR--DL---VDLSGHspHDITSVL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   95 KAYFRELPDPLLTYRLYDKF-AEAVGVQLEPERLVK-----------ILEVLRELPVPNYRTLEFLMRHLVHMASFSAQT 162
Cdd:cd04408    76 KHFLKELPEPVLPFQLYDDFiALAKELQRDSEKAAEspsiveniirsLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDN 155

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 334302880  163 NMHARNLAIVWAPNLLR---SKDIEASgfngtaAFMEVRVQSIVVEFILTH 210
Cdd:cd04408   156 KMSPNNLGIVFGPTLLRplvGGDVSMI------CLLDTGYQAQLVEFLISN 200
RhoGAP_FAM13A1a cd04393
RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 16-177 2.36e-24

RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.


Pssm-ID: 239858 [Multi-domain]  Cd Length: 189  Bit Score: 101.38  E-value: 2.36e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   16 RVFGCDLQEhLQHSGQ---EVPQVLKSCAEFVEEYGVV-DGIYRLSGVSSNIQKLRQEFESERKPDLRRDvylQDIHCVS 91
Cdd:cd04393     1 KVFGVPLQE-LQQAGQpenGVPAVVRHIVEYLEQHGLEqEGLFRVNGNAETVEWLRQRLDSGEEVDLSKE---ADVCSAA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   92 SLCKAYFRELPDPLLT----YRLYDKFAEAVGvqlEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHAR 167
Cdd:cd04393    77 SLLRLFLQELPEGLIPaslqIRLMQLYQDYNG---EDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAE 153

                         170
                  ....*....|
gi 334302880  168 NLAIVWAPNL 177
Cdd:cd04393   154 NLAAVFGPDV 163
RhoGAP_srGAP cd04383
RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 16-208 3.45e-24

RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239848  Cd Length: 188  Bit Score: 100.96  E-value: 3.45e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   16 RVFGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGVV-DGIYRLSGVSSNIQKLRQEFESERKPdLRRDVYLQDIHCVSSLC 94
Cdd:cd04383     1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQhQGIFRVSGSQVEVNDIKNAFERGEDP-LADDQNDHDINSVAGVL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   95 KAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWA 174
Cdd:cd04383    80 KLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159

                         170       180       190
                  ....*....|....*....|....*....|....
gi 334302880  175 PNLLRSKDieasgfNGTAAFMEVRVQSIVVEFIL 208
Cdd:cd04383   160 PTLMPVPE------GQDQVSCQAHVNELIKTIII 187
RhoGAP_myosin_IXA cd04406
RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 18-182 1.42e-22

RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239871  Cd Length: 186  Bit Score: 96.22  E-value: 1.42e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEhLQHSGQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESERKpDLRRDVYlqDIHCVSSLCKA 96
Cdd:cd04406     1 FGVELSR-LTSEDRSVPLVVEKLINYIEMHGLyTEGIYRKSGSTNKIKELRQGLDTDAN-SVNLDDY--NIHVIASVFKQ 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   97 YFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMAsFSAQTN-MHARNLAIVWAP 175
Cdd:cd04406    77 WLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIA-LQEETNrMSANALAIVFAP 155


                  ....*..
gi 334302880  176 NLLRSKD 182
Cdd:cd04406   156 CILRCPD 162
RhoGAP_DLC1 cd04375
RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 17-177 1.97e-21

RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239840  Cd Length: 220  Bit Score: 94.02  E-value: 1.97e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   17 VFGCDLQEHLQHSGQEVPQVLKSCAEFVEEYgVVD--GIYRLSGVSSNIQKLRQEFESERKPDLRRDvylQDIHCVSSLC 94
Cdd:cd04375     4 VFGVPLLVNLQRTGQPLPRSIQQAMRWLRNN-ALDqvGLFRKSGVKSRIQKLRSMIESSTDNVNYDG---QQAYDVADML 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   95 KAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWA 174
Cdd:cd04375    80 KQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLA 159


                  ...
gi 334302880  175 PNL 177
Cdd:cd04375   160 PSL 162
RhoGAP_SYD1 cd04379
RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present ...
 18-182 1.12e-20

RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239844  Cd Length: 207  Bit Score: 91.37  E-value: 1.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEHLQHSGQ--EVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESE-RKPDLRRDVYlQDIHCVSSL 93
Cdd:cd04379     1 FGVPLSRLVEREGEsrDVPIVLQKCVQEIERRGLdVIGLYRLCGSAAKKKELRDAFERNsAAVELSEELY-PDINVITGV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   94 CKAYFRELPDPLLTYRLYDKFAEAVGVQLePERLVK----ILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNL 169
Cdd:cd04379    80 LKDYLRELPEPLITPQLYEMVLEALAVAL-PNDVQTnthlTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNL 158

                         170
                  ....*....|...
gi 334302880  170 AIVWAPNLLRSKD 182
Cdd:cd04379   159 AVCFGPVLMFCSQ 171
RhoGAP_MgcRacGAP cd04382
RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 33-208 2.11e-20

RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239847  Cd Length: 193  Bit Score: 90.05  E-value: 2.11e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   33 VPQVLKSCAEFVEEYGVVD-GIYRLSGVSSNIQKLRQEF-ESERKPDLRrdvyLQDIHCVSSLCKAYFRELPDPLLTYRL 110
Cdd:cd04382    17 IPALIVHCVNEIEARGLTEeGLYRVSGSEREVKALKEKFlRGKTVPNLS----KVDIHVICGCLKDFLRSLKEPLITFAL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  111 YDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASfSAQTNMHARNLAIVWAPNLLRSKDIEASgfnG 190
Cdd:cd04382    93 WKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPD---P 168

                         170
                  ....*....|....*...
gi 334302880  191 TAAFMEVRVQSIVVEFIL 208
Cdd:cd04382   169 MTILQDTVRQPRVVERLL 186
RhoGAP_ARHGAP20 cd04402
RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 18-216 5.17e-19

RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239867  Cd Length: 192  Bit Score: 86.20  E-value: 5.17e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEHLQHSGqeVPQVLKSCAEFVEEYG-VVDGIYRLSGVSSNIQKLRQEFESERKPDLRRdvylQDIHCVSSLCKA 96
Cdd:cd04402     2 FGQPLSNICEDDN--LPKPILDMLSLLYQKGpSTEGIFRRSANAKACKELKEKLNSGVEVDLKA----EPVLLLASVLKD 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   97 YFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYrtleFLMRHLV---HMASFSAQTN-MHARNLAIV 172
Cdd:cd04402    76 FLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNV----LLLKHLIcvlHNISQNSETNkMDAFNLAVC 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 334302880  173 WAPNLLRSKDieasgfnGTAAFME-VRVQSIVVEFILTHVDQLFG 216
Cdd:cd04402   152 IAPSLLWPPA-------SSELQNEdLKKVTSLVQFLIENCQEIFG 189
RhoGAP_fLRG1 cd04397
RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 50-214 6.64e-17

RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239862  Cd Length: 213  Bit Score: 80.87  E-value: 6.64e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   50 VDGIYRLSGvssNIQKLRQ-EFESERKPDLRRDVYLQDIHCVSSLCKAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLV 128
Cdd:cd04397    45 VEGVFRKNG---NIRRLKElTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKR 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  129 KILEVLRELPVPNYRTLEFLMRHLVHMASFS-----AQTNMHARNLAIVWAPNLLRSKDIEASGFNGTaaFMEVRvqsiV 203
Cdd:cd04397   122 VLHLVYCLLPKYHRDTMEVLFSFLKWVSSFShideeTGSKMDIHNLATVITPNILYSKTDNPNTGDEY--FLAIE----A 195

                         170
                  ....*....|.
gi 334302880  204 VEFILTHVDQL 214
Cdd:cd04397   196 VNYLIENNEEF 206
RhoGAP_KIAA1688 cd04389
RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ...
 18-179 1.96e-16

RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239854  Cd Length: 187  Bit Score: 78.59  E-value: 1.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   18 FGCDLQEHLQ-----HSGQEVPQVLKSCAEFVEEYGV--VDGIYRLSGVSSNIQKLRQEFESERKPDLRrdvyLQDIHCV 90
Cdd:cd04389     1 FGSSLEEIMDrqkekYPELKLPWILTFLSEKVLALGGfqTEGIFRVPGDIDEVNELKLRVDQWDYPLSG----LEDPHVP 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   91 SSLCKAYFRELPDPLLTYRLYDkfaEAVGVQLEPErlvKILEVLRELPVPNYRTLEFLMRHLVHMASFS--AQTNMHARN 168
Cdd:cd04389    77 ASLLKLWLRELEEPLIPDALYQ---QCISASEDPD---KAVEIVQKLPIINRLVLCYLINFLQVFAQPEnvAHTKMDVSN 150

                         170
                  ....*....|.
gi 334302880  169 LAIVWAPNLLR 179
Cdd:cd04389   151 LAMVFAPNILR 161
RhoGAP_ARHGAP18 cd04391
RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 30-215 1.01e-15

RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239856  Cd Length: 216  Bit Score: 77.39  E-value: 1.01e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   30 GQEVPQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESerkpDLRRDVYLQD---IHCVSSLCKAYFRELPDPL 105
Cdd:cd04391    19 GSKVPLIFQKLINKLEERGLeTEGILRIPGSAQRVKFLCQELEA----KFYEGTFLWDqvkQHDAASLLKLFIRELPQPL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  106 LTYRLYDKFAEAVGV-----QLEPERLVKILevlreLPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRS 180
Cdd:cd04391    95 LTVEYLPAFYSVQGLpskkdQLQALNLLVLL-----LPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPP 169

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 334302880  181 KDIEASGFNGTAAFMEVRVQ-SIVVEFILTHVDQLF 215
Cdd:cd04391   170 RGKHSKDNESLQEEVNMAAGcANIMRLLIRYQDLLW 205
RhoGAP-ARHGAP11A cd04394
RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 17-205 6.28e-14

RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239859 [Multi-domain]  Cd Length: 202  Bit Score: 71.73  E-value: 6.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   17 VFGCDLQ----EHLQHSGqEVPQVLKSCAEFVEEYGVVDGIYRLSGVSSNIQKLRQEFESerKPDLRRDVYLQDihcVSS 92
Cdd:cd04394     1 VFGVPLHslphSTVPEYG-NVPKFLVDACTFLLDHLSTEGLFRKSGSVVRQKELKAKLEG--GEACLSSALPCD---VAG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   93 LCKAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIV 172
Cdd:cd04394    75 LLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVI 154

                         170       180       190
                  ....*....|....*....|....*....|...
gi 334302880  173 WAPNLLRSKDIEASGFNGTAafMEVRVQSIVVE 205
Cdd:cd04394   155 FAPNLFQSEEGGEKMSSSTE--KRLRLQAAVVQ 185
RhoGAP_ARHGAP19 cd04392
RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 42-215 3.21e-12

RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239857  Cd Length: 208  Bit Score: 67.10  E-value: 3.21e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   42 EFVEEYGVVDGIYRLSGVSSNIQKLRQEFESERKPDLRRDVYlqDIHCVSSLCKAYFRELPDPLLTYRLYD--------- 112
Cdd:cd04392    18 EYLEKNLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGF--HAHDCATVLKGFLGELPEPLLTHAHYPahlqiadlc 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  113 KFAEAVGVQLEP--ERLVKILEVL-RELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDIEASGFN 189
Cdd:cd04392    96 QFDEKGNKTSAPdkERLLEALQLLlLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRNLTPEDLH 175

                         170       180
                  ....*....|....*....|....*.
gi 334302880  190 GTAAFMevrvqSIVVEFILTHVDQLF 215
Cdd:cd04392   176 ENAQKL-----NSIVTFMIKHSQKLF 196
RhoGAP_fSAC7_BAG7 cd04396
RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 17-214 2.23e-11

RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239861  Cd Length: 225  Bit Score: 64.74  E-value: 2.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   17 VFGCDLQEHLQHSGQEV---------------PQVLKSCAEFVEEYGV-VDGIYRLSGVSSNIQKLRQEFESerKPDLRR 80
Cdd:cd04396     1 VFGVSLEESLKYASVAIsivdedgeqyvygyiPVVVAKCGVYLKENATeVEGIFRVAGSSKRIRELQLIFST--PPDYGK 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   81 DVYLQD--IHCVSSLCKAYFRELPDPLLTYRLYDKFAEavgVQLEPERLVKILE--------------------VLRELP 138
Cdd:cd04396    79 SFDWDGytVHDAASVLRRYLNNLPEPLVPLDLYEEFRN---PLRKRPRILQYMKgrineplntdidqaikeyrdLITRLP 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334302880  139 VPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDIEASGfngtaafMEVRVQSIVVEFILTHVDQL 214
Cdd:cd04396   156 NLNRQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHEMDP-------KEYKLSRLVVEFLIEHQDKF 224
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 673-887 2.19e-08

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 58.47  E-value: 2.19e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   673 EEAEGSPETKVEAGKASEDRGEAGGSQETKVRL---------REGSRE---ETEAKEEKSKGQKKADSMEAKGVEEPGGD 740
Cdd:TIGR00927  647 EEGERPTEAEGENGEESGGEAEQEGETETKGENesegeipaeRKGEQEgegEIEAKEADHKGETEAEEVEHEGETEAEGT 726

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   741 EYTDEKEKEIEREEDEQREEAQVEAGRDLEQGAQEDQVAeekwevVQKQEAEGVREDEDKGQREKGyhEARKDQGDGEDS 820
Cdd:TIGR00927  727 EDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETE------HEGETEAEGKEDEDEGEIQAG--EDGEMKGDEGAE 798

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   821 RSPEAATEGGAGEvSKERESGDGEAEGDQRAGGYYLEEDTLSEGSGVASLE---VDCAKEGNPHSSEMEE 887
Cdd:TIGR00927  799 GKVEHEGETEAGE-KDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDekgVDGGGGSDGGDSEEEE 867
RhoGAP_p85 cd04388
RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present ...
 21-179 3.84e-07

RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239853  Cd Length: 200  Bit Score: 51.80  E-value: 3.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   21 DLQEhlQHSGQEV-PQVLKSCAEFVEEYGVVDGIYRLSGVSSNIQKLRQEFESERKPdlrRDVYLQDIHCVSSLCKAYFR 99
Cdd:cd04388     4 DLTE--QFSPPDVaPPLLIKLVEAIEKKGLESSTLYRTQSSSSLTELRQILDCDAAS---VDLEQFDVAALADALKRYLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  100 ELPDPLLTYRLYDKFAE-AVGVQLEPERLVKILEVLRELPVPNYR--TLEFLMRHLVHMASFSAQTNMHARNLAIVWAPN 176
Cdd:cd04388    79 DLPNPVIPAPVYSEMISrAQEVQSSDEYAQLLRKLIRSPNLPHQYwlTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPL 158


                  ...
gi 334302880  177 LLR 179
Cdd:cd04388   159 LFR 161
RhoGAP_fRGD2 cd04399
RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 65-215 6.04e-06

RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239864  Cd Length: 212  Bit Score: 48.48  E-value: 6.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   65 KLRQEFESERKPDLRRdVYLQDIH--CVSSLCKAYFRELPDPLLTY-------RLYDKFAEAVGVQlEPERLVKILEVLR 135
Cdd:cd04399    55 QLRNLLNKPKKPDKEV-IILKKFEpsTVASVLKLYLLELPDSLIPHdiydlirSLYSAYPPSQEDS-DTARIQGLQSTLS 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  136 ELPVPNYRTLEFLMRH---LVHMASFSAQTNMHARNLAIVWAPNLLRSKdIEASGfngtaaFMEVRVQSIVVEFILTHVD 212
Cdd:cd04399   133 QLPKSHIATLDAIITHfyrLIEITKMGESEEEYADKLATSLSREILRPI-IESLL------TIGDKHGYKFFRDLLTHKD 205


                  ...
gi 334302880  213 QLF 215
Cdd:cd04399   206 QIF 208
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 612-849 8.71e-06

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 49.99  E-value: 8.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   612 AYDDLSPLLGPKPPIWKGSGSLEGEAAGCGRQALGQGGEEQACWEVGEDKQAEPGGRLDIREEAEGSPETKveaGKASED 691
Cdd:TIGR00927  626 ALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGE---GEIEAK 702

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   692 RGEAGGSQETKVRLREGSRE--------ETEAKEE-KSKGQKKADSMEAKGVEEPGGDEYTDEKEKEIEREEDEQREEAQ 762
Cdd:TIGR00927  703 EADHKGETEAEEVEHEGETEaegtedegEIETGEEgEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGE 782

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880   763 VEAGRDLE-------QGAQEDQVAEEKWEVVQKQEAEGVREDEDKGQREKGYHEARK-------------------DQGD 816
Cdd:TIGR00927  783 IQAGEDGEmkgdegaEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAenqgeakqdekgvdggggsDGGD 862

                          250       260       270
                   ....*....|....*....|....*....|...
gi 334302880   817 GEDSRSPEAATEggaGEVSKERESGDGEAEGDQ 849
Cdd:TIGR00927  863 SEEEEEEEEEEE---EEEEEEEEEEEEEEENEE 892
PTZ00121 PTZ00121
MAEBL; Provisional
 673-851 2.33e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 2.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  673 EEAEGSPETKVEAGKASEDRGEAGGSQETKVRLR-EGSREETEAKEEKSKGQKKADSMEAKGVEEPGGDEYTDEKEKEIE 751
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKkEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  752 REEDEQREEAQVEAGRDLEQGAQEDQVAEEkwevvQKQEAEGVREDEDKGQREKGYHEARKDQGDGEDSRSPEAATEgGA 831
Cdd:PTZ00121 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADE-----AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK-KA 1492

                         170       180
                  ....*....|....*....|
gi 334302880  832 GEVSKERESGDGEAEGDQRA 851
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKA 1512
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 671-853 1.12e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 42.97  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  671 IREEAEGSPETKVEAGKASEDRGEAGGSQETKVRLREGSREETEAKEEKSKGQKKADSMEAKGVEEPGGDEYTDEKEKEI 750
Cdd:PRK12678   55 IKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERG 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  751 EREEDEQREEAQvEAGRDLEQGAQEDQVAEEKWEVVQKQEAEGVREDEDKGQREKGYHEARKDQGDGEDSRSPEAATEGG 830
Cdd:PRK12678  135 EAARRGAARKAG-EGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGD 213

                         170       180
                  ....*....|....*....|...
gi 334302880  831 AGEVSKERESGDGEAEGDQRAGG 853
Cdd:PRK12678  214 RREERGRRDGGDRRGRRRRRDRR 236
PTZ00121 PTZ00121
MAEBL; Provisional
 650-889 1.65e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 1.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  650 EEQACWEVGEDKQAEpggrlDIREEAEgspETKVEAGKasedrgEAGGSQETKVRLREGSREETEAKEEKSKGQKKADsm 729
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAE-----ELKKAEE---ENKIKAAE------EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE-- 1699

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  730 EAKGVEEpggdeytdekekeiereedeqREEAQVEAGRDLEQGAQEDQVAEEKWEVVQKQeaegvrEDEDKGQREkgyhE 809
Cdd:PTZ00121 1700 EAKKAEE---------------------LKKKEAEEKKKAEELKKAEEENKIKAEEAKKE------AEEDKKKAE----E 1748

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  810 ARKDQGDGEDSRSPEAATEGGAGEVSKERES----GDGEAEGDQRAGGYYLEEDTLS------EGSGVASLEVDCAKEgn 879
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAvieeELDEEDEKRRMEVDKKIKDIFDnfaniiEGGKEGNLVINDSKE-- 1826

                         250
                  ....*....|
gi 334302880  880 PHSSEMEEVA 889
Cdd:PTZ00121 1827 MEDSAIKEVA 1836
PTZ00121 PTZ00121
MAEBL; Provisional
 661-888 1.80e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 1.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  661 KQAEPGGRLD-IREEAEGSPETKVEAGKASEDRG---EAGGSQETKVRLREGSREETEAKEEKSKGQ--KKADSM----E 730
Cdd:PTZ00121 1477 KKAEEAKKADeAKKKAEEAKKKADEAKKAAEAKKkadEAKKAEEAKKADEAKKAEEAKKADEAKKAEekKKADELkkaeE 1556

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  731 AKGVEEPGGDEYTDEKEKEIEREEDEQREEAQVEAGRDLEQGAQEDQVAEEKWEVVQKQEAEGVREDE-DKGQREKGYHE 809
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVE 1636

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334302880  810 ARKDQGDGEDSRSPEAATEGGAGEVSKERESGDGEAEGDQRAGGYYLEEDTLSEGSGVASLEVDCAKEGNPHSSEMEEV 888
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
PTZ00121 PTZ00121
MAEBL; Provisional
 642-851 1.94e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.44  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  642 RQALGQGGEEQACWEVG---EDKQAEPGGRLDIREEAEGSPETKVEAGKASEDRGEAggsQETKVRLREGSR--EETEAK 716
Cdd:PTZ00121 1268 RQAAIKAEEARKADELKkaeEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKA---EEAKKKADAAKKkaEEAKKA 1344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  717 EEKSKGQKKADSMEAKGVEEPGgdEYTDEKEKEIEREEDEQREEA-QVEAGRDLEQGAQEDQvaeEKWEVVQKQEAEGVR 795
Cdd:PTZ00121 1345 AEAAKAEAEAAADEAEAAEEKA--EAAEKKKEEAKKKADAAKKKAeEKKKADEAKKKAEEDK---KKADELKKAAAAKKK 1419

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 334302880  796 EDEDKGQRE--KGYHEARKdqgDGEDSRSPEAATEggAGEVSKERESGDGEAEGDQRA 851
Cdd:PTZ00121 1420 ADEAKKKAEekKKADEAKK---KAEEAKKADEAKK--KAEEAKKAEEAKKKAEEAKKA 1472
PTZ00121 PTZ00121
MAEBL; Provisional
 659-839 3.06e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 3.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  659 EDKQAEPGGRLDIREEAEGSPETKVEAGKASEDRGEAGGSQETKVRLREGSREETEAKEEKSKGQ--KKADSMEAKGVEE 736
Cdd:PTZ00121 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEekKKADEAKKKAEEA 1443

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  737 PGGDEYTDEKEKEIEREEDEQREEAQVEAgRDLEQGAQEDQVAEE---KWEVVQKQ--EAEGVREDEDKGQREKGYHEAR 811
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKA-DEAKKKAEEAKKADEakkKAEEAKKKadEAKKAAEAKKKADEAKKAEEAK 1522

                         170       180       190
                  ....*....|....*....|....*....|
gi 334302880  812 K--DQGDGEDSRSPEAATEggAGEVSKERE 839
Cdd:PTZ00121 1523 KadEAKKAEEAKKADEAKK--AEEKKKADE 1550
PTZ00121 PTZ00121
MAEBL; Provisional
 659-851 4.99e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 4.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  659 EDKQAEPGGRLDIREEAEGSPETKvEAGKASEDRGEAGGSQETKVRLREGSREETEAK---EEKSKGQKKADsmEAKGVE 735
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKAEEAKKAD-EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKkaeEDKNMALRKAE--EAKKAE 1590

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  736 EPGGDEYTDEKEKEIEREEDEQREEAQV-----------EAGRDLEQGAQEDQVAEEKWEVVQKQEAEG-VREDEDKGQR 803
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAkikaeelkkaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENkIKAAEEAKKA 1670

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 334302880  804 EKGYHEARKDQGDGEDSRSPEAATEGGAGEVSKERESGDGEAEGDQRA 851
Cdd:PTZ00121 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718
PTZ00121 PTZ00121
MAEBL; Provisional
 659-850 6.16e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.89  E-value: 6.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  659 EDKQAEPGGRLdiREEAEGSPETKV---EAGKASEDRGEAggsQETKVRLREGSREETEAK--EEKSKGQKKADSMEAKG 733
Cdd:PTZ00121 1455 EAKKAEEAKKK--AEEAKKADEAKKkaeEAKKADEAKKKA---EEAKKKADEAKKAAEAKKkaDEAKKAEEAKKADEAKK 1529

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  734 VEEP-GGDEYTDEKEKEIEREEDEQREEAQVEAGRDLEQG-------------AQEDQVAEEK--------WEVVQKQEA 791
Cdd:PTZ00121 1530 AEEAkKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAkkaeedknmalrkAEEAKKAEEArieevmklYEEEKKMKA 1609

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 334302880  792 EGVREDEDKGQREKGYHEARKDQGDGEDSRSPEAATEGGAGEVSKERESGDGEAEGDQR 850
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
PHA03169 PHA03169
hypothetical protein; Provisional
 666-864 7.64e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.95  E-value: 7.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  666 GGRLDIREEAEGSPETKVEAGKASEDRGEAGGSQETKVRLREGSREETE------AKEEKSKGQKKADSMEA-------- 731
Cdd:PHA03169   28 GTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAeesrhgEKEERGQGGPSGSGSESvgsptpsp 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  732 KGVEEPGGDEYTDEKEKEIEREEDEQREEAQVEAGRDLEQGAQEDQVAEEKWEVVQKQEAEGVREDEDKgQREKGYHEAR 811
Cdd:PHA03169  108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPE-EPEPPTSEPE 186

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 334302880  812 KDQGDGEDSRSPEAATEGGAGEVSKERESGDGEAEGDQRAGGYYLEEDTLSEG 864
Cdd:PHA03169  187 PDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTE 239
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
332-413 9.84e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 9.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334302880  332 SAAAGASDEPEGlvgPSSPRPSPLLPESLENDSIEAAEGEQEPEAEALGGTNSEPGTPRAGRSAIRAGGSSRA---ERCA 408
Cdd:PRK07003  483 DAPPDAAFEPAP---RAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAldvLRNA 559


                  ....*
gi 334302880  409 GVHIS 413
Cdd:PRK07003  560 GMRVS 564
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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