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Conserved domains on  [gi|1559951231|sp|Q96GP6|]
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RecName: Full=Scavenger receptor class F member 2; AltName: Full=SRECRP-1; AltName: Full=Scavenger receptor expressed by endothelial cells 2 protein; Short=SREC-II; Flags: Precursor

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 534-871 1.06e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 62.65  E-value: 1.06e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  534 EPPSGLEQPSPSWSSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPA--SAEEAIPLPASS 611
Cdd:PHA03247  2675 QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAppAVPAGPATPGGP 2754

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  612 DSERSASSVEGPGGAlyARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPP 691
Cdd:PHA03247  2755 ARPARPPTTAGPPAP--APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  692 GS-EAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPglpeeATALAAPSPPRARARGRgPGLLEPTDAGGPPRSAPE 770
Cdd:PHA03247  2833 SAqPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP-----AAKPAAPARPPVRRLAR-PAVSRSTESFALPPDQPE 2906

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  771 AASMLAAELRGKTRslgraevALGAQGPREKPAPPQKAKRSVPPASPARAPPATE----TPGPEKAATDLPAPETPRKKT 846
Cdd:PHA03247  2907 RPPQPQAPPPPQPQ-------PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEpsgaVPQPWLGALVPGRVAVPRFRV 2979

                          330       340
                   ....*....|....*....|....*
gi 1559951231  847 PIQKPPRKKSREAAGELGRAGAPTL 871
Cdd:PHA03247  2980 PQPAPSREAPASSTPPLTGHSLSRV 3004
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 534-871 1.06e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 62.65  E-value: 1.06e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  534 EPPSGLEQPSPSWSSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPA--SAEEAIPLPASS 611
Cdd:PHA03247  2675 QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAppAVPAGPATPGGP 2754

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  612 DSERSASSVEGPGGAlyARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPP 691
Cdd:PHA03247  2755 ARPARPPTTAGPPAP--APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  692 GS-EAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPglpeeATALAAPSPPRARARGRgPGLLEPTDAGGPPRSAPE 770
Cdd:PHA03247  2833 SAqPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP-----AAKPAAPARPPVRRLAR-PAVSRSTESFALPPDQPE 2906

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  771 AASMLAAELRGKTRslgraevALGAQGPREKPAPPQKAKRSVPPASPARAPPATE----TPGPEKAATDLPAPETPRKKT 846
Cdd:PHA03247  2907 RPPQPQAPPPPQPQ-------PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEpsgaVPQPWLGALVPGRVAVPRFRV 2979

                          330       340
                   ....*....|....*....|....*
gi 1559951231  847 PIQKPPRKKSREAAGELGRAGAPTL 871
Cdd:PHA03247  2980 PQPAPSREAPASSTPPLTGHSLSRV 3004
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
679-849 2.99e-03

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 40.93  E-value: 2.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 679 AAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGS--PRTRDPTPRP-PGLPEEATALAAPSP-PRARARGRGPG 754
Cdd:COG3170   117 AAAPAPAPAAPAAAAAAADQPAAEAAPAASGEYYPVRPGDtlWSIAARPVRPsSGVSLDQMMVALYRAnPDAFIDGNINR 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 755 LLE------PTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEVALGAQgPREKPAPPQKAKRSVpPASPARAPPATETPG 828
Cdd:COG3170   197 LKAgavlrvPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPA-PAAAAPAAPPAAAAA-AGPVPAAAEDTLSPE 274

                         170       180
                  ....*....|....*....|.
gi 1559951231 829 PEKAATDLPAPETPRKKTPIQ 849
Cdd:COG3170   275 VTAAAAAEEADALPEAAAELA 295
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 578-797 4.98e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 40.33  E-value: 4.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 578 PEVPTVPAEAPAPSPVPLTTPASAEEAIPlPASSDSERSASSVEGPGGALYARVARREARPARARGEIGGLSLSPSPERR 657
Cdd:pfam17823 222 PAAGTALAAVGNSSPAAGTVTAAVGTVTP-AALATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPSDTMARNPAAPMG 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 658 KPPPPDPATKPKVSWIHGKhsaaaagrAPSPPPPGSEAAPSPSKRKRTPSDKSAhTVEHGSPRTRDPT----PRPPG--L 731
Cdd:pfam17823 301 AQAQGPIIQVSTDQPVHNT--------AGEPTPSPSNTTLEPNTPKSVASTNLA-VVTTTKAQAKEPSaspvPVLHTsmI 371

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1559951231 732 PE-EATA-LAAPSPPRARARGRGPGLLEPTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEVALGAQG 797
Cdd:pfam17823 372 PEvEATSpTTQPSPLLPTQGAAGPGILLAPEQVATEATAGTASAGPTPRSSGDPKTLAMASCQLSTQG 439
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 713-860 5.63e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 39.75  E-value: 5.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 713 TVEHGSPRTRDPTP---RPPGLPEEATALAAPSPPRARARGRGPGLLEPTDAGGPPRSAPEAASMLAAELRGKTRSLGRA 789
Cdd:NF040712  201 TVPRLAREPADARPeevEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGEP 280

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1559951231 790 EVALGA-QGPREKPAPPQkakrsvppasparappatetPGPEKAATDLPAPETPRKKTPIQKPPRKKSREAA 860
Cdd:NF040712  281 PAPGAAeTPEAAEPPAPA--------------------PAAPAAPAAPEAEEPARPEPPPAPKPKRRRRRAS 332
fibronec_FbpA NF033913
LPXTG-anchored fibronectin-binding protein FbpA; FbpA, a fibronectin-binding protein described ...
 534-715 8.13e-03

LPXTG-anchored fibronectin-binding protein FbpA; FbpA, a fibronectin-binding protein described in Streptococcus pyogenes, has a YSIRK-type (crosswall-targeting) signal peptide and a C-terminal LPXTG motif for covalent attachment to the cell wall. It is unrelated to the PavA-like protein from Streptococcus gordonii (see BlastRule NBR009716) that was given the identical name, so the phase LPXTG-anchored is added to the protein name for clarity.


Pssm-ID: 468243 [Multi-domain]  Cd Length: 386  Bit Score: 39.67  E-value: 8.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 534 EPPSGlEQPSPSWSSRASFSSFDTTDEGPVYCVPHEE--APAESRDPEVPTVPAeAPAPSPVPLTTPASAEEAIPLPASS 611
Cdd:NF033913  166 ETPSS-ETPAPSIPALPEAPAQSAESEEPSVAASSEEtpSPETPAAPETPEEPA-APAPSPESEPSVAASSEETPSPSTP 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 612 DSERSASSVEGPggalyarvarrearparargeigglslSPSPErrkppppdpatkpkvswihGKHSAAAAGRAPSPPPP 691
Cdd:NF033913  244 AAPETPAESEAP---------------------------AQPAE-------------------SEESSVAATTSPSPSTP 277

                         170       180
                  ....*....|....*....|....*
gi 1559951231 692 G-SEAAPSPSKRKrtPSDKSAHTVE 715
Cdd:NF033913  278 AeSETQTPPAVTK--DSDKPSSAAE 300
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 679-765 8.44e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 39.60  E-value: 8.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 679 AAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPeEATALAAPSPPRARARGRGPGLLEP 758
Cdd:NF041121   12 AAQMGRAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALP 90


                  ....*..
gi 1559951231 759 TDAGGPP 765
Cdd:NF041121   91 VRVPAPP 97
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 534-871 1.06e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 62.65  E-value: 1.06e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  534 EPPSGLEQPSPSWSSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPA--SAEEAIPLPASS 611
Cdd:PHA03247  2675 QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAppAVPAGPATPGGP 2754

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  612 DSERSASSVEGPGGAlyARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPP 691
Cdd:PHA03247  2755 ARPARPPTTAGPPAP--APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  692 GS-EAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPglpeeATALAAPSPPRARARGRgPGLLEPTDAGGPPRSAPE 770
Cdd:PHA03247  2833 SAqPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP-----AAKPAAPARPPVRRLAR-PAVSRSTESFALPPDQPE 2906

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  771 AASMLAAELRGKTRslgraevALGAQGPREKPAPPQKAKRSVPPASPARAPPATE----TPGPEKAATDLPAPETPRKKT 846
Cdd:PHA03247  2907 RPPQPQAPPPPQPQ-------PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEpsgaVPQPWLGALVPGRVAVPRFRV 2979

                          330       340
                   ....*....|....*....|....*
gi 1559951231  847 PIQKPPRKKSREAAGELGRAGAPTL 871
Cdd:PHA03247  2980 PQPAPSREAPASSTPPLTGHSLSRV 3004
PHA03247 PHA03247
large tegument protein UL36; Provisional
 570-852 8.75e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 8.75e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  570 EAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSERSassvEGPGGALYARVARREARPARARGEIGGLS 649
Cdd:PHA03247  2590 DAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAN----EPDPHPPPTVPPPERPRDDPAPGRVSRPR 2665

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  650 LSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRaPSPPPPGSEAAPSPSKrKRTPSDKSAHTVEHGSPrtrdPTPRPP 729
Cdd:PHA03247  2666 RARRLGRAAQASSPPQRPRRRAARPTVGSLTSLAD-PPPPPPTPEPAPHALV-SATPLPPGPAAARQASP----ALPAAP 2739

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  730 GLPEEATALAAPSPPRARARgrgpgllePTDAGGPPRSAPEAASMLAAElrgktRSLGRAEVALGAQGPREKPAPPQKAK 809
Cdd:PHA03247  2740 APPAVPAGPATPGGPARPAR--------PPTTAGPPAPAPPAAPAAGPP-----RRLTRPAVASLSESRESLPSPWDPAD 2806

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 1559951231  810 RSVPPASPARAPPATETPGPEKAATDLPAPETPRKKTPIQKPP 852
Cdd:PHA03247  2807 PPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
581-860 6.76e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 56.40  E-value: 6.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 581 PTVPAEAPAPSPVPLTTP-ASAEEAIPLPASSDSERSASSVEGPGGALYARVARREARPARARGEIGGLSLSPSPERRKP 659
Cdd:PRK07003  374 ARVAGAVPAPGARAAAAVgASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKA 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 660 PPPDPAtkpkvswihgkhSAAAAGRAPSPPP-PGSEAAPSPSKR---KRTPSDKSAHTVEHGSPRTRDptPRPPGLPEEA 735
Cdd:PRK07003  454 NARASA------------DSRCDERDAQPPAdSGSASAPASDAPpdaAFEPAPRAAAPSAATPAAVPD--ARAPAAASRE 519

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 736 TALAAPSPPRARARGRGPGlleptdAGGPPRSAPEAASMLAAeLR--GKTRSLGRAEVAlgaqGPREKPAPPQKAkrsvp 813
Cdd:PRK07003  520 DAPAAAAPPAPEARPPTPA------AAAPAARAGGAAAALDV-LRnaGMRVSSDRGARA----AAAAKPAAAPAA----- 583

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1559951231 814 pasparappaTETPGPEKAATDLPAPETPRKKTPIQKPPRKKSREAA 860
Cdd:PRK07003  584 ----------APKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAA 620
PHA03247 PHA03247
large tegument protein UL36; Provisional
 671-852 2.70e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 2.70e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  671 SWIHGKHSAAAaGRAPSPPPPGSEAAPSPSKRKRTPSDKSAhtvehgsPRTRDPT----PRPPGLPEEATALAAPSPPRA 746
Cdd:PHA03247  2535 TWIRGLEELAS-DDAGDPPPPLPPAAPPAAPDRSVPPPRPA-------PRPSEPAvtsrARRPDAPPQSARPRAPVDDRG 2606

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  747 RARGRGPGLLEPTDAGGPPRSAPEAASmlaaelRGKTRSLGRAEVALGAQGPREKPAPPQ--KAKRSVPPASPARAPPAT 824
Cdd:PHA03247  2607 DPRGPAPPSPLPPDTHAPDPPPPSPSP------AANEPDPHPPPTVPPPERPRDDPAPGRvsRPRRARRLGRAAQASSPP 2680

                          170       180
                   ....*....|....*....|....*...
gi 1559951231  825 ETPGPeKAATDLPAPETPRKKTPIQKPP 852
Cdd:PHA03247  2681 QRPRR-RAARPTVGSLTSLADPPPPPPT 2707
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
678-853 5.41e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 50.26  E-value: 5.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 678 SAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAPSP-PRARARGRGPGLL 756
Cdd:PRK12323  393 AAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPaAAARPAAAGPRPV 472

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 757 EPTDAGGPPRSAPEAASMLAA-------ELRGKTRSLGRAEVALG------AQGPREKPAPPQKAKrsvppasparappa 823
Cdd:PRK12323  473 AAAAAAAPARAAPAAAPAPADddpppweELPPEFASPAPAQPDAApagwvaESIPDPATADPDDAF-------------- 538

                         170       180       190
                  ....*....|....*....|....*....|
gi 1559951231 824 tETPGPEKAATDLPAPETPRKKTPIQKPPR 853
Cdd:PRK12323  539 -ETLAPAPAAAPAPRAAAATEPVVAPRPPR 567
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 675-869 1.61e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.83  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 675 GKHSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHtvehgSPRTRDPTPRPPGLPEEATALAAPSPPRARARGRGPG 754
Cdd:PRK07764  605 SSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAA-----PAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPA 679

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 755 LLEPTDAGGPPRS-APEAASMLAAELRGKTRSLGRAEVALGAQGPREKPAPPQkakrSVPPASPARAPPATETPGPEKAA 833
Cdd:PRK07764  680 APPPAPAPAAPAApAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPS----PAADDPVPLPPEPDDPPDPAGAP 755

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1559951231 834 TDLPAPETPRKKTPIQKPPRKKSREAAGELGRAGAP 869
Cdd:PRK07764  756 AQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP 791
flhF PRK06995
flagellar biosynthesis protein FlhF;
731-864 2.47e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 47.65  E-value: 2.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 731 LPEEATALAAPSPPRARARGRGPGLLEPTDAGGPPRSAPEAASMLAAelrgKTRSLGRAEVALGAQGPREKPAPPQKAKR 810
Cdd:PRK06995   43 LADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVE----HAKRLTAQREQLVARAAAPAAPEAQAPAA 118

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1559951231 811 SVPPASPARAPPATETPGPEKAATDLPAPETPRKKTPIQKP-PRKKSREAAGELG 864
Cdd:PRK06995  119 PAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARiERIVNDTVMQELR 173
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 678-779 4.97e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 4.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 678 SAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARGRGPGLLE 757
Cdd:PRK14951  388 APAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVA 467

                          90       100
                  ....*....|....*....|....*.
gi 1559951231 758 P----TDAGGPPRSAPEAASMLAAEL 779
Cdd:PRK14951  468 PepavASAAPAPAAAPAAARLTPTEE 493
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 678-866 5.98e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 5.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 678 SAAAAGRAPSPPPPGSEAAPS--PSKRKRTPSDKSAHTVEH----GSPRTRDPTPRPPGLPEEATALAAPSPPRARARGR 751
Cdd:PRK07764  616 AAPAAPAAPAAPAPAGAAAAPaeASAAPAPGVAAPEHHPKHvavpDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 752 GPGLLEPTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPATETPGPEK 831
Cdd:PRK07764  696 AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1559951231 832 AATDLPAPETPRKKTPiqkPPRKKSREAAGELGRA 866
Cdd:PRK07764  776 PSPPSEEEEMAEDDAP---SMDDEDRRDAEEVAME 807
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
679-871 1.65e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.25  E-value: 1.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 679 AAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAhtvehgsprtRDPTPRPPglpeeatALAAPSPPRARARGRGPGLLEP 758
Cdd:PRK12323  388 AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA----------AAPARRSP-------APEALAAARQASARGPGGAPAP 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 759 TDAGGP---PRSAPEAASMLAAELRGKTRSLGRAEVALGAQGPREKP----APPQKAKRSVPPASPARAPPATET---PG 828
Cdd:PRK12323  451 APAPAAapaAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweeLPPEFASPAPAQPDAAPAGWVAESipdPA 530

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1559951231 829 PEKAATDLPAPETPRKKTPIQKPPRKKSREAAGELGRAGAPTL 871
Cdd:PRK12323  531 TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGL 573
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 566-789 3.67e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 3.67e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  566 VPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSERSASSVEGPGGALYARVARREARPARARGEI 645
Cdd:PHA03307   194 PPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEAS 273

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  646 GGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPP--PPGSEAAPSPSKRKRTPSDKSAHTvehGSPRTRD 723
Cdd:PHA03307   274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSssSSRESSSSSTSSSSESSRGAAVSP---GPSPSRS 350

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1559951231  724 PTPRPPGLPeeatalAAPSPPRARARGRGPGllePTDAGGPPRSAPEAASMLAAEL---RGKTRSLGRA 789
Cdd:PHA03307   351 PSPSRPPPP------ADPSSPRKRPRPSRAP---SSPAASAGRPTRRRARAAVAGRarrRDATGRFPAG 410
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
 678-794 5.04e-04

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 43.75  E-value: 5.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 678 SAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRtRDPTPRPPGL--PEEATALAAPSPPRARARGRGPGL 755
Cdd:PRK01297   20 APPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPR-RERKPKPASLwkLEDFVVEPQEGKTRFHDFNLAPEL 98

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1559951231 756 LEPTDAGGPPRSAPEAASMLAAELRGKTrSLGRAEVALG 794
Cdd:PRK01297   99 MHAIHDLGFPYCTPIQAQVLGYTLAGHD-AIGRAQTGTG 136
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 678-752 5.49e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 43.78  E-value: 5.49e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1559951231 678 SAAAAGRAPSPPPPGSEAAPSPSKRKRtPSDKSAHTVEHGS---PRTRDPTPRPPGLPEEATAlaapSPPRARARGRG 752
Cdd:PRK14954  387 SPDVKKKAPEPDLPQPDRHPGPAKPEA-PGARPAELPSPASaptPEQQPPVARSAPLPPSPQA----SAPRNVASGKP 459
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 563-804 5.96e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 5.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 563 VYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSERSASSVEGPGGAlyarvARREARPARAR 642
Cdd:PRK07764  584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV-----AAPEHHPKHVA 658

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 643 GEIGGLSLSPSPERRKPPPPDPATKPKVSWihgkHSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTR 722
Cdd:PRK07764  659 VPDASDGGDGWPAKAGGAAPAAPPPAPAPA----APAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPA 734

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 723 -DPTPRPPGLPEEATALA-----APSPPRARARGRGPGLLEPTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEVA--LG 794
Cdd:PRK07764  735 aDDPVPLPPEPDDPPDPAgapaqPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAMELLEeeLG 814

                         250
                  ....*....|
gi 1559951231 795 AQGPREKPAP 804
Cdd:PRK07764  815 AKKIEEFAAD 824
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
559-779 6.14e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 6.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 559 DEGPVYCVPHEEAPAESRDPEVPTVPAE--APAPSPVPLTTPASAEEAIPLPASSDSERSASSVEGPGGALYARVARREA 636
Cdd:PRK12323  384 QPAPAAAAPAAAAPAPAAPPAAPAAAPAaaAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAAR 463

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 637 RPARARGEIGGLSLSPSPERRKppppdpatkpkvswihgkhsAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEH 716
Cdd:PRK12323  464 PAAAGPRPVAAAAAAAPARAAP--------------------AAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVA 523

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1559951231 717 GS---PRTRDPTPRPPGLPEEATALAAPSPPRARARGRGPGLLEPTDAGGPPRSAPE----AASM----LAAEL 779
Cdd:PRK12323  524 ESipdPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDwpalAARLpvrgLAQQL 597
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 676-853 7.63e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 43.14  E-value: 7.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 676 KHSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPR-------TRDPTP-------------RPPGLPEEA 735
Cdd:PTZ00449  506 KHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGetkegevGKKPGPakehkpskiptlsKKPEFPKDP 585

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 736 TALAAPSPPRARARGRGPGllEPTDAGGPPRsaPEAASMlaaelrgkTRSLGRAEvalGAQGPReKPAPPQKAKrsvppa 815
Cdd:PTZ00449  586 KHPKDPEEPKKPKRPRSAQ--RPTRPKSPKL--PELLDI--------PKSPKRPE---SPKSPK-RPPPPQRPS------ 643

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1559951231 816 sparappatetpGPEKaatdlpaPETPRK-KTPiqKPPR 853
Cdd:PTZ00449  644 ------------SPER-------PEGPKIiKSP--KPPK 661
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
697-869 1.01e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.94  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 697 PSPSKRKRTPSDKSAHTVEHGSPRTRDPTP--RPPGLPEEATALAAPSPPRARARGRGPGlleptdAGGPPRSAPEAASM 774
Cdd:PRK12323  365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAaaPAPAAPPAAPAAAPAAAAAARAVAAAPA------RRSPAPEALAAARQ 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 775 LAAELRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPETPRKKTPIQKPPRK 854
Cdd:PRK12323  439 ASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAP 518

                         170
                  ....*....|....*
gi 1559951231 855 KSREAAGELGRAGAP 869
Cdd:PRK12323  519 AGWVAESIPDPATAD 533
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
717-869 1.12e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 717 GSPRTRDPTPRPPGLPEEATALAAPSPPRARARGRGPGLLEPTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEvalgAQ 796
Cdd:PRK07003  365 GGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR----GD 440

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1559951231 797 GPREKPAPPQKAKrSVPPASPARAPPATETPGPEKAATDLPAPETPrkktpiqKPPRKKSREAAGELGRAGAP 869
Cdd:PRK07003  441 DAADGDAPVPAKA-NARASADSRCDERDAQPPADSGSASAPASDAP-------PDAAFEPAPRAAAPSAATPA 505
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 534-869 1.97e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 1.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  534 EPPSGLEQPSPSWSSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPlttPASAEEAIPLPASSDS 613
Cdd:PHA03307    62 CDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPP---PASPPPSPAPDLSEML 138

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  614 ERSASSVEGPGGALYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGS 693
Cdd:PHA03307   139 RPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASAS 218

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  694 EAAPSPSKRKRTP----SDKSAHTVEHGS---PRTRDPTPRP-----------PGLPEEATALAAPSPPRARARGRGPGL 755
Cdd:PHA03307   219 SPAPAPGRSAADDagasSSDSSSSESSGCgwgPENECPLPRPapitlptriweASGWNGPSSRPGPASSSSSPRERSPSP 298

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  756 LEPTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPAT-ETPGPEKAAT 834
Cdd:PHA03307   299 SPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKrPRPSRAPSSP 378

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1559951231  835 DLPAPETPRKKTPIQKPPRKKSREAAGELGRAGAP 869
Cdd:PHA03307   379 AASAGRPTRRRARAAVAGRARRRDATGRFPAGRPR 413
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 670-870 2.21e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 2.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 670 VSWIHGKHSAAAAGRAPSPPPPGSEAAPSPskrKRTPSDKSAHTVehgsPRTRDPTPRPPGLPEEATALAAPSPPRARAR 749
Cdd:PRK07764  584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAA---RPAAPAAPAAPA----APAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 750 GRGPGllEPTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEVALGAQGPREKPAPPqkAKRSVPPASPARAPPATETPGP 829
Cdd:PRK07764  657 VAVPD--ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPP--AGQADDPAAQPPQAAQGASAPS 732

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1559951231 830 EKAATDLPAPETPRKKTPIQKPPRKKSREAAGELGRAGAPT 870
Cdd:PRK07764  733 PAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773
flhF PRK06995
flagellar biosynthesis protein FlhF;
677-772 2.35e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 41.49  E-value: 2.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 677 HSAAAAGRAPSPPPPgsEAAPSPSKRKRTPSDKSA-HTVEHGSPRT--RDPTPRPPGLPEEATAlAAPSPPRARARGRGP 753
Cdd:PRK06995   52 APPAAAAPAAAQPPP--AAAPAAVSRPAAPAAEPApWLVEHAKRLTaqREQLVARAAAPAAPEA-QAPAAPAERAAAENA 128

                          90
                  ....*....|....*....
gi 1559951231 754 GLLEPTDAGGPPRSAPEAA 772
Cdd:PRK06995  129 ARRLARAAAAAPRPRVPAD 147
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
678-868 2.49e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 2.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 678 SAAAAGRAPSPPPPGseAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAPsPPRARARGRGPGLLE 757
Cdd:PRK07003  364 GGGAPGGGVPARVAG--AVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA-PPAAPAPPATADRGD 440

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 758 PTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPATETPGPEKAATDLP 837
Cdd:PRK07003  441 DAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRED 520

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1559951231 838 APETPRKKTPIQKPPRKKSREAAGELGRAGA 868
Cdd:PRK07003  521 APAAAAPPAPEARPPTPAAAAPAARAGGAAA 551
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
679-849 2.99e-03

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 40.93  E-value: 2.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 679 AAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGS--PRTRDPTPRP-PGLPEEATALAAPSP-PRARARGRGPG 754
Cdd:COG3170   117 AAAPAPAPAAPAAAAAAADQPAAEAAPAASGEYYPVRPGDtlWSIAARPVRPsSGVSLDQMMVALYRAnPDAFIDGNINR 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 755 LLE------PTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEVALGAQgPREKPAPPQKAKRSVpPASPARAPPATETPG 828
Cdd:COG3170   197 LKAgavlrvPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPA-PAAAAPAAPPAAAAA-AGPVPAAAEDTLSPE 274

                         170       180
                  ....*....|....*....|.
gi 1559951231 829 PEKAATDLPAPETPRKKTPIQ 849
Cdd:COG3170   275 VTAAAAAEEADALPEAAAELA 295
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 578-797 4.98e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 40.33  E-value: 4.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 578 PEVPTVPAEAPAPSPVPLTTPASAEEAIPlPASSDSERSASSVEGPGGALYARVARREARPARARGEIGGLSLSPSPERR 657
Cdd:pfam17823 222 PAAGTALAAVGNSSPAAGTVTAAVGTVTP-AALATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPSDTMARNPAAPMG 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 658 KPPPPDPATKPKVSWIHGKhsaaaagrAPSPPPPGSEAAPSPSKRKRTPSDKSAhTVEHGSPRTRDPT----PRPPG--L 731
Cdd:pfam17823 301 AQAQGPIIQVSTDQPVHNT--------AGEPTPSPSNTTLEPNTPKSVASTNLA-VVTTTKAQAKEPSaspvPVLHTsmI 371

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1559951231 732 PE-EATA-LAAPSPPRARARGRGPGLLEPTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEVALGAQG 797
Cdd:pfam17823 372 PEvEATSpTTQPSPLLPTQGAAGPGILLAPEQVATEATAGTASAGPTPRSSGDPKTLAMASCQLSTQG 439
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 713-860 5.63e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 39.75  E-value: 5.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 713 TVEHGSPRTRDPTP---RPPGLPEEATALAAPSPPRARARGRGPGLLEPTDAGGPPRSAPEAASMLAAELRGKTRSLGRA 789
Cdd:NF040712  201 TVPRLAREPADARPeevEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGEP 280

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1559951231 790 EVALGA-QGPREKPAPPQkakrsvppasparappatetPGPEKAATDLPAPETPRKKTPIQKPPRKKSREAA 860
Cdd:NF040712  281 PAPGAAeTPEAAEPPAPA--------------------PAAPAAPAAPEAEEPARPEPPPAPKPKRRRRRAS 332
fibronec_FbpA NF033913
LPXTG-anchored fibronectin-binding protein FbpA; FbpA, a fibronectin-binding protein described ...
 534-715 8.13e-03

LPXTG-anchored fibronectin-binding protein FbpA; FbpA, a fibronectin-binding protein described in Streptococcus pyogenes, has a YSIRK-type (crosswall-targeting) signal peptide and a C-terminal LPXTG motif for covalent attachment to the cell wall. It is unrelated to the PavA-like protein from Streptococcus gordonii (see BlastRule NBR009716) that was given the identical name, so the phase LPXTG-anchored is added to the protein name for clarity.


Pssm-ID: 468243 [Multi-domain]  Cd Length: 386  Bit Score: 39.67  E-value: 8.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 534 EPPSGlEQPSPSWSSRASFSSFDTTDEGPVYCVPHEE--APAESRDPEVPTVPAeAPAPSPVPLTTPASAEEAIPLPASS 611
Cdd:NF033913  166 ETPSS-ETPAPSIPALPEAPAQSAESEEPSVAASSEEtpSPETPAAPETPEEPA-APAPSPESEPSVAASSEETPSPSTP 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 612 DSERSASSVEGPggalyarvarrearparargeigglslSPSPErrkppppdpatkpkvswihGKHSAAAAGRAPSPPPP 691
Cdd:NF033913  244 AAPETPAESEAP---------------------------AQPAE-------------------SEESSVAATTSPSPSTP 277

                         170       180
                  ....*....|....*....|....*
gi 1559951231 692 G-SEAAPSPSKRKrtPSDKSAHTVE 715
Cdd:NF033913  278 AeSETQTPPAVTK--DSDKPSSAAE 300
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 679-765 8.44e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 39.60  E-value: 8.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 679 AAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPeEATALAAPSPPRARARGRGPGLLEP 758
Cdd:NF041121   12 AAQMGRAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALP 90


                  ....*..
gi 1559951231 759 TDAGGPP 765
Cdd:NF041121   91 VRVPAPP 97
PHA03378 PHA03378
EBNA-3B; Provisional
 534-870 8.80e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.67  E-value: 8.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 534 EPPSGLEQPSPSWSSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIPLPASSDS 613
Cdd:PHA03378  653 QPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPG 732

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 614 ERSAssvegPGGAlyarvarrearparargeigglslsPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPgs 693
Cdd:PHA03378  733 RARP-----PAAA-------------------------PGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPP-- 780

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 694 EAAPSPSKRKRtpsdksahtvehGSPRtrdPTPRPPGLPEEATALaapspPRARARGRGPglleptdaggpprsapeAAS 773
Cdd:PHA03378  781 QAPPAPQQRPR------------GAPT---PQPPPQAGPTSMQLM-----PRAAPGQQGP-----------------TKQ 823

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 774 MLAAELRGKTRSlGRAEVALGAQGPREKPAPPQKakrsvppasparappateTPGPEKAATDLPAPE-TPRKKTPIQKPP 852
Cdd:PHA03378  824 ILRQLLTGGVKR-GRPSLKKPAALERQAAAGPTP------------------SPGSGTSDKIVQAPVfYPPVLQPIQVMR 884

                         330
                  ....*....|....*...
gi 1559951231 853 RKKSREAAGELGRAGAPT 870
Cdd:PHA03378  885 QLGSVRAAAASTVTQAPT 902
PHA03378 PHA03378
EBNA-3B; Provisional
 690-871 9.02e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.67  E-value: 9.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 690 PPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTrdPTP-RPPGLPEEATALAAPSPPRARARGRGPGLLEPTDAGGPPRSA 768
Cdd:PHA03378  669 IGHIPYQPSPTGANTMLPIQWAPGTMQPPPRA--PTPmRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARP 746

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231 769 PEAASMLAAELRGKTRSLGRAEVALGAQGPREKP-APPQKAKRsvppasparaPPATETPGPEKAATDLPAPETPRKKTP 847
Cdd:PHA03378  747 PAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPqAPPAPQQR----------PRGAPTPQPPPQAGPTSMQLMPRAAPG 816

                         170       180
                  ....*....|....*....|....
gi 1559951231 848 IQKPPRKKSREAAGELGRAGAPTL 871
Cdd:PHA03378  817 QQGPTKQILRQLLTGGVKRGRPSL 840
PHA03247 PHA03247
large tegument protein UL36; Provisional
 679-860 9.96e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 9.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  679 AAAAGRAPSPPPPGSEAAPsPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLP--------EEATALAAPSP-PRARAR 749
Cdd:PHA03247   268 APETARGATGPPPPPEAAA-PNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPagdaeeedDEDGAMEVVSPlPRPRQH 346

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559951231  750 ------------GRGPGLLEPTDAG-GPPRSAPEAASMLAAELRGKTRSlgrAEVALGAQGPREKPAPPQKAKRSVPPAS 816
Cdd:PHA03247   347 yplgfpkrrrptWTPPSSLEDLSAGrHHPKRASLPTRKRRSARHAATPF---ARGPGGDDQTRPAAPVPASVPTPAPTPV 423

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1559951231  817 PARAPPATETPGP--EKAATDLPAPETPRKKTPIQKPPRKKSREAA 860
Cdd:PHA03247   424 PASAPPPPATPLPsaEPGSDDGPAPPPERQPPAPATEPAPDDPDDA 469
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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