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Conserved domains on  [gi|20141041|sp|Q9HY59|]
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RecName: Full=Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Short=L-Ara4N-phosphoundecaprenol flippase subunit ArnF; AltName: Full=Undecaprenyl phosphate-aminoarabinose flippase subunit ArnF

Protein Classification

DMT family transporter( domain architecture ID 581036)

DMT (drug/metabolite transporter) family transporter is an inner membrane protein involved in the transport of one or more of a variety of substrates such as amino acids, drugs, metabolites, and sugar phosphates, among others

Gene Ontology:  GO:0055085|GO:0005215|GO:0005886
PubMed:  11432728
TCDB:  2.A.7

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EamA super family cl23754
EamA-like transporter family; This family includes many hypothetical membrane proteins of ...
 4-128 9.61e-36

EamA-like transporter family; This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.


The actual alignment was detected with superfamily member PRK02971:

Pssm-ID: 474045  Cd Length: 129  Bit Score: 119.71  E-value: 9.61e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20141041    4 LRGWLAALGSVLLASAAQLGMRWGMSRLPLPEAW----AGQTPERAALLAVALAVAAYAASLLCWLAALRHLPLGRAYSL 79
Cdd:PRK02971   1 MMGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAwdfiAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 20141041   80 LSASYALVYLLAASLPAFDETFSTSKTLGVGLVVLGVLTVNARRTAAAP 128
Cdd:PRK02971  81 LSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKARY 129
 
Name Accession Description Interval E-value
PRK02971 PRK02971
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
 4-128 9.61e-36

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional


Pssm-ID: 235094  Cd Length: 129  Bit Score: 119.71  E-value: 9.61e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20141041    4 LRGWLAALGSVLLASAAQLGMRWGMSRLPLPEAW----AGQTPERAALLAVALAVAAYAASLLCWLAALRHLPLGRAYSL 79
Cdd:PRK02971   1 MMGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAwdfiAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 20141041   80 LSASYALVYLLAASLPAFDETFSTSKTLGVGLVVLGVLTVNARRTAAAP 128
Cdd:PRK02971  81 LSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKARY 129
 
Name Accession Description Interval E-value
PRK02971 PRK02971
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
 4-128 9.61e-36

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional


Pssm-ID: 235094  Cd Length: 129  Bit Score: 119.71  E-value: 9.61e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20141041    4 LRGWLAALGSVLLASAAQLGMRWGMSRLPLPEAW----AGQTPERAALLAVALAVAAYAASLLCWLAALRHLPLGRAYSL 79
Cdd:PRK02971   1 MMGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAwdfiAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 20141041   80 LSASYALVYLLAASLPAFDETFSTSKTLGVGLVVLGVLTVNARRTAAAP 128
Cdd:PRK02971  81 LSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKARY 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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