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Conserved domains on  [gi|1557928062|gb|QAA08188|]
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cytochrome oxidase subunit 1, partial (mitochondrion) [Ichneumonidae sp. INDOBIOSYS-CCDB26091-B03]

Protein Classification

heme-copper oxidase family protein( domain architecture ID 14)

heme-copper oxidase family protein may catalyze the transfer of electrons from an electron donor onto molecular oxygen

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Heme_Cu_Oxidase_I super family cl00275
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-197 4.81e-115

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


The actual alignment was detected with superfamily member MTH00153:

Pssm-ID: 469701  Cd Length: 511  Bit Score: 336.45  E-value: 4.81e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00153   32 SLLIRAELGQPGSLIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00153  112 SSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDRMPLFVWSVLITAI 191

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00153  192 LLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPIL 228
 
Name Accession Description Interval E-value
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-197 4.81e-115

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 336.45  E-value: 4.81e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00153   32 SLLIRAELGQPGSLIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00153  112 SSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDRMPLFVWSVLITAI 191

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00153  192 LLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPIL 228
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-197 1.04e-107

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 317.12  E-value: 1.04e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:cd01663    25 SLLIRLELSQPGSQLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:cd01663   105 LSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEKMPLFVWSVLITAF 184

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:cd01663   185 LLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPIL 221
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
1-197 7.76e-56

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 184.56  E-value: 7.76e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPiMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:COG0843    37 ALLMRLQLAGPGLGLLSPETYNQLFTMHGTIMIFFFATP-FLAGFGNYLVPLQIGARDMAFPRLNALSFWLYLFGGLLLL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:COG0843   116 ISLFVGGAADVGWTFYPPLSGLEASPGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPGMTLMRMPLFTWAALVTSI 195

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:COG0843   196 LILLAFPVLAAALLLLLLDRSLGTHFFDPAGGGDPLL 232
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-197 1.77e-33

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 123.45  E-value: 1.77e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPiMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLi 80
Cdd:pfam00115  21 GLLIRLQLAFPGLNFLSPLTYNQLRTLHGNLMIFWFATP-FLFGFGNYLVPLMIGARDMAFPRLNALSFWLVVLGAVLL- 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 nsNLINQGVGTGWTVYPPLslninhegMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLdQLTLFTWSILITTI 160
Cdd:pfam00115  99 --LASFGGATTGWTEYPPL--------VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRAPGMTL-RMPLFVWAILATAI 167

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTsffdpsGGGDPIL 197
Cdd:pfam00115 168 LILLAFPVLAAALLLLLLDRSLGA------GGGDPLL 198
QoxB TIGR02882
cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type ...
 1-197 4.66e-30

cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 131928  Cd Length: 643  Bit Score: 115.72  E-value: 4.66e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGgFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:TIGR02882  72 ALLMRAQLTVPDNKFLDAQHYNEIFTTHGVIMIIFMAMPFIIG-LMNIVVPLQIGARDVAFPVLNALSFWLFFAGAMLFN 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:TIGR02882 151 ISFVIGGSPDAGWTNYAPLAGPEFSPGVGVNYYLIALQISGIGTLMTGINFFVTILKMRAPGMKLMQMPMFTWTTLITTL 230

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:TIGR02882 231 IIIFAFPVLTVALALMTTDRIFDTAFFTVAHGGMPML 267
 
Name Accession Description Interval E-value
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-197 4.81e-115

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 336.45  E-value: 4.81e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00153   32 SLLIRAELGQPGSLIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00153  112 SSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDRMPLFVWSVLITAI 191

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00153  192 LLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPIL 228
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-197 1.04e-107

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 317.12  E-value: 1.04e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:cd01663    25 SLLIRLELSQPGSQLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:cd01663   105 LSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEKMPLFVWSVLITAF 184

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:cd01663   185 LLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPIL 221
COX1 MTH00167
cytochrome c oxidase subunit I; Provisional
 1-197 2.14e-102

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177222  Cd Length: 512  Bit Score: 304.29  E-value: 2.14e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00167   34 SLLIRAELSQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00167  114 ASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGSINFITTIINMKPPGITQYQTPLFVWSILVTTI 193

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00167  194 LLLLSLPVLAAAITMLLTDRNLNTTFFDPAGGGDPIL 230
COX1 MTH00223
cytochrome c oxidase subunit I; Provisional
 1-197 1.77e-99

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177260  Cd Length: 512  Bit Score: 296.89  E-value: 1.77e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00223   31 SLLIRAELGQPGALLGDDQLYNVIVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNNMSFWLLPPSLYLLL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00223  111 SSSAVESGVGTGWTVYPPLSSNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTIINMRSPGMQLERLPLFVWSVKVTAF 190

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00223  191 LLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPIL 227
COX1 MTH00116
cytochrome c oxidase subunit I; Provisional
 1-197 4.82e-99

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177177  Cd Length: 515  Bit Score: 295.85  E-value: 4.82e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00116   34 SLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00116  114 ASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGAINFITTCINMKPPAMSQYQTPLFVWSVLITAV 193

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00116  194 LLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPIL 230
COX1 MTH00142
cytochrome c oxidase subunit I; Provisional
 1-197 1.90e-95

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214431  Cd Length: 511  Bit Score: 286.62  E-value: 1.90e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00142   32 SLLIRAELGQPGSLLGDDQLYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPALLLLL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00142  112 SSAAVESGAGTGWTVYPPLSSNLAHSGGSVDLAIFSLHLAGVSSILGAINFITTVINMRAGGMKFERVPLFVWSVKITAI 191

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00142  192 LLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPIL 228
COX1 MTH00007
cytochrome c oxidase subunit I; Validated
 1-197 6.17e-89

cytochrome c oxidase subunit I; Validated


Pssm-ID: 133649  Cd Length: 511  Bit Score: 269.85  E-value: 6.17e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00007   31 SLLIRIELGQPGAFLGSDQLYNTIVTAHAFLMIFFLVMPVFIGGFGNWLVPLMLGAPDMAFPRLNNMSFWLLPPALILLV 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00007  111 SSAAVEKGVGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTVINMRWKGLRLERIPLFVWAVVITVV 190

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00007  191 LLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPIL 227
COX1 MTH00103
cytochrome c oxidase subunit I; Validated
 1-197 3.63e-88

cytochrome c oxidase subunit I; Validated


Pssm-ID: 177165  Cd Length: 513  Bit Score: 267.90  E-value: 3.63e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00103   34 SLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00103  114 ASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVLITAV 193

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00103  194 LLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPIL 230
COX1 MTH00183
cytochrome c oxidase subunit I; Provisional
 1-197 1.44e-87

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177234  Cd Length: 516  Bit Score: 266.40  E-value: 1.44e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00183   34 SLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00183  114 ASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAV 193

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00183  194 LLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPIL 230
COX1 MTH00037
cytochrome c oxidase subunit I; Provisional
 1-197 3.18e-87

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177112  Cd Length: 517  Bit Score: 265.54  E-value: 3.18e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00037   34 SVIIRTELAQPGSLLQDDQIYNVIVTAHALVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00037  114 ASAGVESGAGTGWTIYPPLSSNIAHAGGSVDLAIFSLHLAGASSILASINFITTIINMRTPGMTFDRLPLFVWSVFITAF 193

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00037  194 LLLLSLPVLAGAITMLLTDRNINTTFFDPAGGGDPIL 230
COX1 MTH00077
cytochrome c oxidase subunit I; Provisional
 1-197 3.45e-87

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214419  Cd Length: 514  Bit Score: 265.65  E-value: 3.45e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00077   34 SLLIRAELSQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00077  114 ASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTSINMKPPSMSQYQTPLFVWSVLITAV 193

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00077  194 LLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPVL 230
COX1 MTH00182
cytochrome c oxidase subunit I; Provisional
 1-197 6.65e-82

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214451  Cd Length: 525  Bit Score: 252.05  E-value: 6.65e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00182   36 SMLIRLELSAPGAMLGDDHLYNVIVTAHAFIMIFFLVMPVMIGGFGNWLVPLYIGAPDMAFPRLNNISFWLLPPALILLL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00182  116 GSAFVEQGAGTGWTVYPPLSSIQAHSGGAVDMAIFSLHLAGVSSILGAINFITTIFNMRAPGVTFNRLPLFVWSILITAF 195

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00182  196 LLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPIL 232
COX1 MTH00184
cytochrome c oxidase subunit I; Provisional
 1-197 2.49e-81

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177235  Cd Length: 519  Bit Score: 250.51  E-value: 2.49e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00184   36 SMLIRLELSAPGSMLGDDHLYNVIVTAHAFVMIFFLVMPVMIGGFGNWFVPLYIGAPDMAFPRLNNISFWLLPPALTLLL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00184  116 GSAFVEQGAGTGWTVYPPLSSIQAHSGGSVDMAIFSLHLAGISSILGAMNFITTIFNMRAPGITMDRMPLFVWSILVTTF 195

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00184  196 LLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPIL 232
COX1 MTH00079
cytochrome c oxidase subunit I; Provisional
 1-197 2.03e-80

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177148  Cd Length: 508  Bit Score: 248.06  E-value: 2.03e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00079   35 SLIIRLELSKPGLLLGNGQLYNSVITAHAILMIFFMVMPSMIGGFGNWMLPLMLGAPDMSFPRLNNLSFWLLPTSLFLIL 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSlNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00079  115 DSCFVDMGPGTSWTVYPPLS-TLGHPGSSVDLAIFSLHCAGISSILGGINFMVTTKNLRSSSISLEHMSLFVWTVFVTVF 193

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00079  194 LLVLSLPVLAGAITMLLTDRNLNTSFFDPSTGGNPLL 230
COX1 MTH00026
cytochrome c oxidase subunit I; Provisional
 1-197 2.46e-75

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 164599  Cd Length: 534  Bit Score: 235.68  E-value: 2.46e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00026   35 SMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLL 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:MTH00026  115 GSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVFITAI 194

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00026  195 LLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPIL 231
Heme_Cu_Oxidase_I cd00919
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-197 2.24e-68

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


Pssm-ID: 238461  Cd Length: 463  Bit Score: 215.47  E-value: 2.24e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPlML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:cd00919    23 ALLIRLELATPGSLFLDPQLYNQLVTAHGVIMIFFFVMPAIFGGFGNLLPP-LIGARDLAFPRLNNLSFWLFPPGLLLLL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:cd00919   102 SSVLVGGGAGTGWTFYPPLSTLSYSSGVGVDLAILGLHLAGVSSILGAINFITTILNMRAPGMTLDKMPLFVWSVLVTAI 181

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:cd00919   182 LLLLALPVLAAALVMLLLDRNFGTSFFDPAGGGDPVL 218
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
1-197 7.76e-56

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 184.56  E-value: 7.76e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPiMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:COG0843    37 ALLMRLQLAGPGLGLLSPETYNQLFTMHGTIMIFFFATP-FLAGFGNYLVPLQIGARDMAFPRLNALSFWLYLFGGLLLL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:COG0843   116 ISLFVGGAADVGWTFYPPLSGLEASPGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPGMTLMRMPLFTWAALVTSI 195

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:COG0843   196 LILLAFPVLAAALLLLLLDRSLGTHFFDPAGGGDPLL 232
COX1 MTH00048
cytochrome c oxidase subunit I; Provisional
 1-197 4.61e-53

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177123  Cd Length: 511  Bit Score: 176.79  E-value: 4.61e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:MTH00048   35 SLLIRLNFLDPYYNVISLDVYNFLITNHGIIMIFFFLMPVLIGGFGNYLLPLLLGLSDLNLPRLNALSAWLLVPSIVFLL 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLInqGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLdQLTLFTWSILITTI 160
Cdd:MTH00048  115 LSMCL--GAGVGWTFYPPLSSSLFSSSWGVDFLMFSLHLAGVSSLFGSINFICTIYSAFMTNVFS-RTSIILWSYLFTSI 191

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:MTH00048  192 LLLLSLPVLAAAITMLLFDRNFGSAFFDPLGGGDPVL 228
Ubiquinol_Oxidase_I cd01662
Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory ...
 2-197 2.67e-44

Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.


Pssm-ID: 238832  Cd Length: 501  Bit Score: 153.51  E-value: 2.67e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   2 LIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGgFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLIN 81
Cdd:cd01662    30 LLMRTQLALPGNDFLSPEHYNQIFTMHGTIMIFLFAMPLVFG-LMNYLVPLQIGARDVAFPRLNALSFWLFLFGGLLLNA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  82 SNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTIL 161
Cdd:cd01662   109 SLLIGGFPDAGWFAYPPLSGLEYSPGVGVDYWILGLQFSGIGTLLGAINFIVTILKMRAPGMTLMRMPIFTWTTLVTSIL 188

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1557928062 162 LLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:cd01662   189 ILFAFPVLTAALALLELDRYFGTHFFTNALGGNPML 224
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-197 1.77e-33

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 123.45  E-value: 1.77e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPiMIGGFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLi 80
Cdd:pfam00115  21 GLLIRLQLAFPGLNFLSPLTYNQLRTLHGNLMIFWFATP-FLFGFGNYLVPLMIGARDMAFPRLNALSFWLVVLGAVLL- 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 nsNLINQGVGTGWTVYPPLslninhegMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLdQLTLFTWSILITTI 160
Cdd:pfam00115  99 --LASFGGATTGWTEYPPL--------VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRAPGMTL-RMPLFVWAILATAI 167

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTsffdpsGGGDPIL 197
Cdd:pfam00115 168 LILLAFPVLAAALLLLLLDRSLGA------GGGDPLL 198
QoxB TIGR02882
cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type ...
 1-197 4.66e-30

cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 131928  Cd Length: 643  Bit Score: 115.72  E-value: 4.66e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   1 SLIIRMELGNPGFLINNDQIYNSIVTSHAFIMIF*MVMPIMIGgFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLI 80
Cdd:TIGR02882  72 ALLMRAQLTVPDNKFLDAQHYNEIFTTHGVIMIIFMAMPFIIG-LMNIVVPLQIGARDVAFPVLNALSFWLFFAGAMLFN 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  81 NSNLINQGVGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTI 160
Cdd:TIGR02882 151 ISFVIGGSPDAGWTNYAPLAGPEFSPGVGVNYYLIALQISGIGTLMTGINFFVTILKMRAPGMKLMQMPMFTWTTLITTL 230

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1557928062 161 LLLLAVPVLAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:TIGR02882 231 IIIFAFPVLTVALALMTTDRIFDTAFFTVAHGGMPML 267
PRK15017 PRK15017
cytochrome o ubiquinol oxidase subunit I; Provisional
 9-197 3.56e-27

cytochrome o ubiquinol oxidase subunit I; Provisional


Pssm-ID: 184978  Cd Length: 663  Bit Score: 107.71  E-value: 3.56e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062   9 GNPGFLINNDqiYNSIVTSHAFIMIF*MVMPIMIGgFGNWLIPLML*APDMAFPRMNNMSFWLLPPSIMLLINSNLINQG 88
Cdd:PRK15017   89 GEAGFLPPHH--YDQIFTAHGVIMIFFVAMPFVIG-LMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEF 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1557928062  89 VGTGWTVYPPLSLNINHEGMSVDMAIFSLHMAGMSSIMGAINFITTIMNMLPKKMKLDQLTLFTWSILITTILLLLAVPV 168
Cdd:PRK15017  166 AQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPI 245

                         170       180
                  ....*....|....*....|....*....
gi 1557928062 169 LAGAITMLLTDRNLNTSFFDPSGGGDPIL 197
Cdd:PRK15017  246 LTVTVALLTLDRYLGTHFFTNDMGGNMMM 274
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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