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Conserved domains on  [gi|1565061357|gb|QAX32906|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Cryptoblepharus mertensi]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-303 7.23e-129

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00135:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 347  Bit Score: 371.06  E-value: 7.23e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   2 GLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPACIMLTVALSMKLGLAPL 81
Cdd:MTH00135   32 GLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  82 HFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSlSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMT 161
Cdd:MTH00135  112 HFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMI 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 162 AVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQELT 241
Cdd:MTH00135  191 LVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELT 270

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1565061357 242 NHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPTTTNTPYKWRLSPKTVTSPMCTMLTLS 303
Cdd:MTH00135  271 KQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAISTTAT 332
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 2-303 7.23e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 371.06  E-value: 7.23e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   2 GLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPACIMLTVALSMKLGLAPL 81
Cdd:MTH00135   32 GLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  82 HFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSlSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMT 161
Cdd:MTH00135  112 HFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMI 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 162 AVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQELT 241
Cdd:MTH00135  191 LVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELT 270

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1565061357 242 NHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPTTTNTPYKWRLSPKTVTSPMCTMLTLS 303
Cdd:MTH00135  271 KQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAISTTAT 332
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-268 1.37e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 119.84  E-value: 1.37e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSI-IPVISKQHHPRSTEATTKYFLTQAAASAMLLF--------ASTTN----AWYTGTWDISQLTYQPACIM 67
Cdd:COG1007   129 LGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAALAAGGANSPLLLLGLVL 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  68 LTVALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLALMF-LTHNSLSP------SILMMMGLLSTLIGGWGGL 140
Cdd:COG1007   209 VLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrLLVEAFPGlaadwqLLLAVLAVLSMTVGNLAAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 141 NQTQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNLALYLL----MTATTFIMLMFSSSK-----TITDLTTASTLSPPIT 211
Cdd:COG1007   289 AQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLaylfMNLGAFAVILLLSRKggeaeEIEDLAGLARRSPLLA 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1565061357 212 ALMMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRLAY 268
Cdd:COG1007   369 LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-267 2.17e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 105.42  E-value: 2.17e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSI-IPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPACIMLT---------- 69
Cdd:TIGR01770 129 LGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNisllllgivl 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  70 --VALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLA----LMFLTHNSLSP---SILMMMGLLSTLIGGWGGL 140
Cdd:TIGR01770 209 ilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAvflrLFLYILFGFSEawqIFLAIIAFLSMLIGNFGAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 141 NQTQTRKIMAFSSIAHLGW-MTAVMPLAPNLALLNLALYLLMTATTF-----IMLMFS----SSKTITDLTTASTLSPPI 210
Cdd:TIGR01770 289 AQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAVLFYIFIYALMSLgafgvLSLLRSykdeWIEYISDFAGLFKTNPIL 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1565061357 211 TALMMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRLA 267
Cdd:TIGR01770 369 AILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-251 1.03e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 1.03e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVI-SKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQP-----------ACIML 68
Cdd:pfam00361   9 LGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssglllLFLLI 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  69 TVALSMKLGLAPLHFWLPEVLQGTSFS-TALIITTWQKLAPLALM-----FLTHNSLSPSILMMMGLLSTLIGGWGGLNQ 142
Cdd:pfam00361  89 LVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGSLAALVQ 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 143 TQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNLALYLL----MTATTFIM-----LMFSSSKTITDLTTASTLSPPITAL 213
Cdd:pfam00361 169 TDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLthglFSAGLFLCagsviYRRVHTRNIRDYGGLAKTMPILALV 248

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1565061357 214 MMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATI 251
Cdd:pfam00361 249 FLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 2-303 7.23e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 371.06  E-value: 7.23e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   2 GLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPACIMLTVALSMKLGLAPL 81
Cdd:MTH00135   32 GLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  82 HFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSlSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMT 161
Cdd:MTH00135  112 HFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMI 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 162 AVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQELT 241
Cdd:MTH00135  191 LVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELT 270

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1565061357 242 NHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPTTTNTPYKWRLSPKTVTSPMCTMLTLS 303
Cdd:MTH00135  271 KQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAISTTAT 332
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-303 1.47e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 359.91  E-value: 1.47e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPACIMLTVALSMKLGLAP 80
Cdd:MTH00112   31 TGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAP 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  81 LHFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM 160
Cdd:MTH00112  111 FHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWM 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 161 TAVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQEL 240
Cdd:MTH00112  191 IAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQEL 270

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1565061357 241 TNHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPTTTNTPYKWRLSPKTvTSPMCTMLTLS 303
Cdd:MTH00112  271 TKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKK-NTLTATLTTLS 332
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-303 1.17e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 344.98  E-value: 1.17e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPACIMLTVALSMKLGLAP 80
Cdd:MTH00070   31 MGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAP 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  81 LHFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM 160
Cdd:MTH00070  111 FHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWM 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 161 TAVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQEL 240
Cdd:MTH00070  191 IIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQEL 270

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1565061357 241 TNHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPTTTNTPYKWRLSPKTvTSPMCTMLTLS 303
Cdd:MTH00070  271 TKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKT-NNLLSLTIILS 332
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-303 9.27e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 327.57  E-value: 9.27e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPACIMLTVALSMKLGLAP 80
Cdd:MTH00105   31 IGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAP 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  81 LHFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM 160
Cdd:MTH00105  111 FHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWM 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 161 TAVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQEL 240
Cdd:MTH00105  191 TAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQEL 270

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1565061357 241 TNHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPTTTNTPYKWRLSPKTVTSPMCTMLTLS 303
Cdd:MTH00105  271 TKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPMTLLPTLIILS 333
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-288 6.68e-92

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 277.20  E-value: 6.68e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPACIMLTVALSMKLGLAP 80
Cdd:MTH00041   31 LGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAP 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  81 LHFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM 160
Cdd:MTH00041  111 CHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWI 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 161 TAVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQEL 240
Cdd:MTH00041  191 IITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCL 270

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1565061357 241 TNHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPTTTNTPYKWRLS 288
Cdd:MTH00041  271 IQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNS 318
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-289 1.73e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 257.97  E-value: 1.73e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPACIMLTVALSMKLGLAP 80
Cdd:MTH00200   31 LGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAP 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  81 LHFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM 160
Cdd:MTH00200  111 GHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWL 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 161 TAVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQEL 240
Cdd:MTH00200  191 LSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQEL 270

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1565061357 241 TNHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPTTTNTPYKWRLSP 289
Cdd:MTH00200  271 SKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKS 319
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-279 7.04e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 189.26  E-value: 7.04e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWytgtwdISQLTYQPACIMLTVALSMKLGLAP 80
Cdd:MTH00160   32 MGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNISSMLINSSLLLKLGAAP 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  81 LHFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSlspSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM 160
Cdd:MTH00160  106 FHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN---NFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWM 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 161 TAVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQEL 240
Cdd:MTH00160  183 LSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLL 262

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1565061357 241 TNHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPTTT 279
Cdd:MTH00160  263 ISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNK 301
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-289 9.36e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 178.54  E-value: 9.36e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISqltyqpacIMLTVALSMKLGLAP 80
Cdd:MTH00144   31 VGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCLKLGLFP 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  81 LHFWLPEVLQGTSFSTALIITTWQKLAPLALM-FLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGW 159
Cdd:MTH00144  103 FHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsNFLDLYWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGW 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 160 MTAVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTlSPPITALMMTLLMSLGGLPPLTGFVPKWLILQE 239
Cdd:MTH00144  183 MLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKP-SYKTGLSIISLLLSLGGLPPFLGFCSKLLVLIS 261

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1565061357 240 LTNHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPTTTNTPYKWRLSP 289
Cdd:MTH00144  262 SMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 2-298 4.27e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 150.70  E-value: 4.27e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   2 GLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTnawytgTWDISQLTYQPACIMLTVALSMKLGLAPL 81
Cdd:MTH00011   34 GMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLKNITALMLLVSLMLKLGMAPC 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  82 HFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMT 161
Cdd:MTH00011  108 HFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMT 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 162 AVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQELT 241
Cdd:MTH00011  188 MISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLT 267

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1565061357 242 NHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSfPTTTNTPYKWRLSPKTVTSPMCT 298
Cdd:MTH00011  268 SNSMILILLVLIVGSLMNLFYYLNLIFNFMYLS-PTFSSLKSAPYEPKTKILISMCT 323
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-274 7.36e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 139.42  E-value: 7.36e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISqltyqpaCIMLTVALSMKLGLAP 80
Cdd:MTH00197   25 IGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS-------VVLVILGLLLKLGAFP 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  81 LHFWLPEVLQGTSFSTALIITTWQKLAPLalMFLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM 160
Cdd:MTH00197   98 FHFWVPSVMESLSWFNCFLLATWQKLAPL--LILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWM 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 161 TAVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQEL 240
Cdd:MTH00197  176 LMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSL 255

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1565061357 241 TNHNFPTTATIMAMSALLSLFFYLRLAYSSTLTS 274
Cdd:MTH00197  256 LSSNISLITFMLILSTCFSLYYYLSLAYKSLILS 289
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-268 1.37e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 119.84  E-value: 1.37e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSI-IPVISKQHHPRSTEATTKYFLTQAAASAMLLF--------ASTTN----AWYTGTWDISQLTYQPACIM 67
Cdd:COG1007   129 LGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAALAAGGANSPLLLLGLVL 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  68 LTVALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLALMF-LTHNSLSP------SILMMMGLLSTLIGGWGGL 140
Cdd:COG1007   209 VLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrLLVEAFPGlaadwqLLLAVLAVLSMTVGNLAAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 141 NQTQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNLALYLL----MTATTFIMLMFSSSK-----TITDLTTASTLSPPIT 211
Cdd:COG1007   289 AQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLaylfMNLGAFAVILLLSRKggeaeEIEDLAGLARRSPLLA 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1565061357 212 ALMMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRLAY 268
Cdd:COG1007   369 LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-266 3.27e-29

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 116.07  E-value: 3.27e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVIS-KQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPA------------CIM 67
Cdd:PRK05777  130 LGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALAdgsgnsllllfgLVF 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  68 LTVALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLALMF-LTHNSLSPS------ILMMMGLLSTLIGGWGGL 140
Cdd:PRK05777  210 LLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrLLVVAFGGLsedwqqVLAIIAIASMLVGNLAAL 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 141 NQTQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNL----ALYLLMTATTFIMLMFSSSK-----TITDLTTASTLSPPIT 211
Cdd:PRK05777  290 SQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVlfylLAYLFMTLGAFGVISLLRRKggeaeSISDFAGLSKRSPLLA 369

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1565061357 212 ALMMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRL 266
Cdd:PRK05777  370 AVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-267 2.17e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 105.42  E-value: 2.17e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSI-IPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQPACIMLT---------- 69
Cdd:TIGR01770 129 LGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNisllllgivl 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  70 --VALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLA----LMFLTHNSLSP---SILMMMGLLSTLIGGWGGL 140
Cdd:TIGR01770 209 ilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAvflrLFLYILFGFSEawqIFLAIIAFLSMLIGNFGAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 141 NQTQTRKIMAFSSIAHLGW-MTAVMPLAPNLALLNLALYLLMTATTF-----IMLMFS----SSKTITDLTTASTLSPPI 210
Cdd:TIGR01770 289 AQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAVLFYIFIYALMSLgafgvLSLLRSykdeWIEYISDFAGLFKTNPIL 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1565061357 211 TALMMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRLA 267
Cdd:TIGR01770 369 AILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-251 1.03e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 1.03e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVI-SKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQP-----------ACIML 68
Cdd:pfam00361   9 LGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssglllLFLLI 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  69 TVALSMKLGLAPLHFWLPEVLQGTSFS-TALIITTWQKLAPLALM-----FLTHNSLSPSILMMMGLLSTLIGGWGGLNQ 142
Cdd:pfam00361  89 LVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGSLAALVQ 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 143 TQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNLALYLL----MTATTFIM-----LMFSSSKTITDLTTASTLSPPITAL 213
Cdd:pfam00361 169 TDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLthglFSAGLFLCagsviYRRVHTRNIRDYGGLAKTMPILALV 248

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1565061357 214 MMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATI 251
Cdd:pfam00361 249 FLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 3-266 3.98e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.49  E-value: 3.98e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   3 LELNTLSI-IPVISKQHHPRSTEATTKYFLTQAAASAMLLFA-------------STTNAWYTGTWDISQLTYQPACIML 68
Cdd:MTH00196   22 IELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSSVSVPIGYLLI 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  69 TVALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSLspSILMMMGLLSTLIGGWGGLNQTQTRKI 148
Cdd:MTH00196  102 IVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNV--NILLIGGLFSLFVGAIGALNQTKIKRL 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 149 MAFSSIAHLGWMTAVMPL----APNLALLNLALYLLMTATTF-IMLMFSSSKT-ITDLTTASTLSPPITALMMTLLMSLG 222
Cdd:MTH00196  180 LAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFsIILALNVYKNlIIEFSGLSRRLPILAITLALTFLSIA 259

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1565061357 223 GLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRL 266
Cdd:MTH00196  260 GIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 2-266 9.11e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 92.00  E-value: 9.11e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   2 GLELNTLSI-IPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDI----SQLTYQPACIMLTVALSMKL 76
Cdd:MTH00199  125 AIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGKILITISLLFKL 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  77 GLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLALmfLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAH 156
Cdd:MTH00199  205 SAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSI--LVQIGPVTNVVLICAVLSIIYGAIGALNQTKIKRLLAYSGIGH 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 157 LG---WMTAVMPLAPNLALLN-LALYLLMTATTFIMLMF--SSSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGF 230
Cdd:MTH00199  283 MGfilFGVAIGSFESIQASLIyMIIYVIMSICSFSIILSlkLTKGLIVEVSGLSRKNPVIALTLALTFLSIAGIPPLAGF 362

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1565061357 231 VPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRL 266
Cdd:MTH00199  363 LSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-266 2.23e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 90.59  E-value: 2.23e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTY----------QPACIMLTV 70
Cdd:COG0651   134 VFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLLV 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  71 ALSMKLGLAPLHFWLPEVLQGTS------FSTAL-------IITTWQKLAPLALMFLTHNslspsILMMMGLLSTLIGGW 137
Cdd:COG0651   214 GFGIKAALFPLHFWLPDAYPAAPspvsalLSGLLtkvgvyaILRVLTLLFGADPALFLGT-----LLLVLGLLTMLVGAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 138 GGLNQTQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNLALYLLMTATTFIMLMFSS--------SKTITDLTTASTLSPP 209
Cdd:COG0651   289 GALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAgaieratgTRDLDKLGGLGKRMPL 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1565061357 210 ITALMMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRL 266
Cdd:COG0651   369 TAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 1-266 3.18e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 69.89  E-value: 3.18e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRST---------EATTKYFLTQAAASAMLLFASTTNAWYTG--------------TWDIS 57
Cdd:MTH00198  215 LALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGnegmlgtilsatleTTNIE 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  58 QLTYQPACIMLTVALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLapLALMFLTHNSLSPSILMMMGLLSTLIGGW 137
Cdd:MTH00198  295 LRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAF 372

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 138 GGLNQTQTRKIMAFSSIAHLGWM----TAVMPLAPNLALLNLALYLLMTATTFIMLM---------------------FS 192
Cdd:MTH00198  373 GALNQTRIKRLLAYSGIGHIGFIligvSAGTYESLQASWTYAVTYLVSALASFTVICtleefgtrtptsrqrdgsfgnYN 452

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 193 SSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALL-------SLFFYLR 265
Cdd:MTH00198  453 LVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVALFaiictciSAFYYIR 532


                  .
gi 1565061357 266 L 266
Cdd:MTH00198  533 I 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 21-233 8.32e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 62.33  E-value: 8.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  21 RSTEATTKYFLTQAAASAMLLFASTtnaWYTGT-------WDI------SQLTYQPAC----IMLTVALSMKLGLAPLHF 83
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFS---WLYGLsggeielQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQ 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  84 WLPEVLQGTSFSTALIITTWQKLAPLALMFLTHNSLSPS-------ILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAH 156
Cdd:CHL00049  236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 157 LGWMTAVMPLAPN-----LALLNLALYLLMTATTFIMLMFSSSKTITDLT---TASTLSPPITALMMTL-LMSLGGLPPL 227
Cdd:CHL00049  316 IGYVIIGIIVGDSndgyaSMITYMLFYIFMNLGTFACIVLFGLRTGTDNIrdyAGLYTKDPFLALSLALcLLSLGGIPPL 395


                  ....*.
gi 1565061357 228 TGFVPK 233
Cdd:CHL00049  396 AGFFGK 401
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-268 1.11e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.12  E-value: 1.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQL--------TYQPACIMLTVAL 72
Cdd:PRK08375  133 VFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagalaenpTVVTAFGFVLLAL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  73 SMKLGLAPLHFWLPEVLQGTS-FSTALIITTWQKLAPLAL------MFLTHNSLSP---SILMMMGLLSTLIGGWGGLNQ 142
Cdd:PRK08375  213 ALKAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAVYALiriyftVFGGDFRFALglgWLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 143 TQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNLALYLLMTATTFIMLMFSS--------SKTITDLTTASTLSPPITALM 214
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAgaievtygTRRLSELSGLGRRMPLTAAAF 372

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1565061357 215 MTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRLAY 268
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 4-268 1.09e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.16  E-value: 1.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   4 ELNTLS---IIPVISKqhhpRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTW---DISQLTYQP--------ACIMLT 69
Cdd:PRK08668  128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFdfaDISQGLINDtstgfaliVFLFLL 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  70 VALSMKLGLAPLHFWLPEVLQGT--SFSTAL----------IITTWQKLAPLALMFLTHN-----SLSPSILMMMGLLST 132
Cdd:PRK08668  204 AFGVAKAGIFPLHVWAPDAYSEApqSFSAVLsgqlsklgayGFLLVLYVLPGTKLFSEFGtyrgvPLFNYILAWLGNISI 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 133 LIGGWGGLNQTQTRKIMAFSSIAHLGWMTaVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSP---- 208
Cdd:PRK08668  284 IVGTLMAILQEDIKKLIAYSSVANGGYIL-VGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKISEmggl 362

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1565061357 209 ----PITALM-MTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRLAY 268
Cdd:PRK08668  363 iekmPFTFAMyLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 25-259 8.22e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.40  E-value: 8.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  25 ATTKYFLTQAAASAMLLFASTTNAWYTG-TWDISQLTYQP--------ACIMLTVALSMKLGLAPLHFWLPEV-LQGTSF 94
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGgTFDLLELLNLPlpfgvqtwLFLAFFIAFAVKVPLFPLHTWLPDAhVEAPTA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  95 STALIITTWQKLAPLALMFL-------THNSLSPsILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMTavMPLA 167
Cdd:TIGR01972 237 GSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL--LGIF 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 168 PNLALLNLALYLLMTATTFI-MLMFS---------SSKTITDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLIL 237
Cdd:TIGR01972 314 SFNELGISGAVFQMISHGLItAALFLlvgvlyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL 393

                         250       260
                  ....*....|....*....|..
gi 1565061357 238 QElTNHNFPTTATIMAMSALLS 259
Cdd:TIGR01972 394 LG-SFKVNPVVAFLAALGIVLA 414
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 18-268 3.72e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 51.31  E-value: 3.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  18 HHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQL-----------TYQPACIMLTVALSMKLGLAPLHFWLP 86
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilsspLLTLILLLLLLGAFGKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  87 EVLQG-TSFS---------TA---LIIttwqKLAPLalmfLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSS 153
Cdd:COG1009   236 DAMEGpTPVSallhaatmvKAgvyLLA----RLSPL----FALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYST 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 154 IAHLGWMTAVMplapNLALLNLALYLLMTATTFIMLMFSSS-----KTIT-DLTTASTLSP--PITALMMTL-LMSLGGL 224
Cdd:COG1009   308 VSQLGYMFLAL----GVGAYVAALFHLLTHAFFKALLFLGAgsvihATGTrDIRKMGGLRKkmPITAITFLIgALSLAGI 383

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1565061357 225 PPLTGFVPKWLILQE-LTNHNFPTTATIMAM-SALLSLFFYLRLAY 268
Cdd:COG1009   384 PPFAGFFSKEAILEAaLEAGGLGPLLLAVALlGAFLTAFYSFRLFF 429
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 65-268 1.29e-06

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 49.69  E-value: 1.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  65 CIMLTVALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHN--SLSPSILM---MMGLLSTLIGGWGG 139
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALIivtIVGSLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 140 LNQTQTRKIMAFSSIAHLGWMtaVMPLAPNLALLNLALYllMTATTFIMLMFSSSKTI-------TDLTTASTL--SPPI 210
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYM--VVACGLSHYSISLFHL--MNHAFFKALLFLSAGSVihalsdeQDMRKMGGLisFLPL 368

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 211 TALMMTL-LMSLGGLPPLTGFVPKWLILQELTNHNFPTTAT-IMAMSALLSLFFYLRLAY 268
Cdd:MTH00020  369 TYIFFLIgSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYwLGCFSALLTAFYSIRLIY 428
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
20-233 1.38e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 49.66  E-value: 1.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  20 PRSTEATTKYFLTQAAASAMLLFAST----TNAWYTGTWDISQLTYQPACIMLTVAL-------SMKLGLAPLHFWLPEV 88
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALALITSPSLGLALALvfviagiAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  89 LQGTSFSTALIITTWQKLA--PLALMFLT--HNSLSPS---ILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGW-- 159
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfALAIRLLVtaFPSFDEQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvm 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 160 --MTAVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTITD-LTTASTL---SPPITALMMTLLMSLGGLPPLTGFVPK 233
Cdd:PRK02504  317 igLVAGTEAGYASMVFYLLAYLFMNLGAFACVILFSLRTGTDqISDYAGLyqkDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 8-266 1.99e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.92  E-value: 1.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   8 LSIIPV---ISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTG--TWDISQLTYQP--------ACIMLTVALSM 74
Cdd:COG1008   142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGalTFDIAELAAAPlpltaqllLFLAFFIAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  75 KLGLAPLHFWLPEVLQGTSFSTALIittwqkLAPLAL-------------MF-LTHNSLSPsILMMMGLLSTLIGGWGGL 140
Cdd:COG1008   222 KVPMFPFHTWLPDAHVEAPTAGSVL------LAGVLLkmggygllrfalpLFpEASAYFAP-LLAALGVIGIIYGALVAL 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 141 NQTQTRKIMAFSSIAHLGWMTAVMplapnlallNLALYLLMTATTFIM--------LMFSS---------SKTITDLTTA 203
Cdd:COG1008   295 AQTDLKRLIAYSSVSHMGFVLLGI---------FALNPLGLQGAVLQMvshglitaALFLLvgvlydrthTRDIADLGGL 365

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1565061357 204 STLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQELTnHNFPTTATIMAMSALLSLFFYLRL 266
Cdd:COG1008   366 AKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAF-QVNPWLAILAALGLILTAAYLLWM 427
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
66-268 7.34e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 47.25  E-value: 7.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  66 IMLTVALSMKLGLAPLhFWLPEvlqgtSFSTALIITT------------WQKLAPLALMFLTHNSLSPSILMMMGLLSTL 133
Cdd:PRK12663  211 LLFLLAFGMKAALFPF-MWLPA-----AYHTPNTEVAalfaalltkvgiYALIRVFTLLFPQERELLHPLLATMAAITMV 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 134 IGGWGGLNQTQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNLA--LYLLMTATTFIMLMFSSSKTITDLTTASTLS---- 207
Cdd:PRK12663  285 IGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIfyLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGglyr 364

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1565061357 208 --PPITALMMTLLMSLGGLPPLTGFVPKWLILQ-ELTNHNFPTTATIMAMS--ALLSLFFYLRLAY 268
Cdd:PRK12663  365 kePLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALMLITSliTMYSLFRIFFLAY 430
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 24-269 2.11e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.86  E-value: 2.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  24 EATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTYQ----------PACIMLTVALSMKLGLAPLHFWLPEVLQG-- 91
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKmsenptvvakIALALFIAGLAMKSGAVPVHMWLPDAYPAap 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  92 TSFSTALIITTWQKLAPLALMFLTHNSLS------PSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMTAVMP 165
Cdd:PRK08376  252 SSISAMLLVIKQAGLYALARVLFSIYGPAinlatvGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLG 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 166 LAPNLALLNLALYLLMTA-----------TTFIMLMFSSSKTITDLTTASTLS---------PPITALMMTLLMSLGGLP 225
Cdd:PRK08376  332 VGLAALGDPAMASYGEIAlaggiyhivnhALYKALLFLTAGAVIYETGTRNLNelgglartmPKTTIAFLIGAAAIVGLP 411

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1565061357 226 PLTGFVPKWLILQELTNHNfPTTATIMAMSALLSLFFYLRLAYS 269
Cdd:PRK08376  412 PFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHT 454
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 66-238 2.76e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 45.34  E-value: 2.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  66 IMLTVALSMKLGLAPLHFWLPEvlqgtSFSTALIITT------WQKLAPLAlMFLTHNSLSPS-----ILMMMGLLSTLI 134
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPD-----SYPTAPAPVTavfaglLTKVGVYA-IIRTHTLLFPGggldtLLMVVALLTMVV 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 135 GGWGGLNQTQTRKIMAFSSIAHLGWMT--AVMPLAPNLALLNLALYLLMTATTFIMLMF------SSSKTITDLTTASTL 206
Cdd:PRK12665  287 GILGAIAQSDIKRLLSFTLVSHIGYMVfgIALSTVAGLSGAIYYVAHHITVQTTLFLVVglierqAGSSSLRRLGGLAKA 366

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1565061357 207 SPPITALMMTLLMSLGGLPPLTGFVPKWLILQ 238
Cdd:PRK12665  367 SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 65-282 3.04e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 45.38  E-value: 3.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  65 CIML---TVALSMKLGLaplHFWLPEVLQGTSFSTALIITTWQKLAPLALM-----FLTHNSLSPSILMMMGLLSTLIGG 136
Cdd:MTH00210  214 CLLLfigAVGKSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLIirsgpLFEGSPLALTIVTILGALTAFFAA 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 137 WGGLNQTQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNLAlyllMTATTFIMLMFSSSKTI-------TDLTTASTL--S 207
Cdd:MTH00210  291 TVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHL----MNHAFFKALLFLSAGSVihavsdeQDMRKMGGLikS 366

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1565061357 208 PPITALMMTL-LMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMA-MSALLSLFFYLRLAYsstLTsFPTTTNTP 282
Cdd:MTH00210  367 IPFTYVMILIgSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGsFSALLTAFYSIRLIY---LT-FITNTNSK 439
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 51-269 8.09e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 44.14  E-value: 8.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  51 TGTWDISQL-TYQPACIMLTVALSM-------KLGLAPLHFWLPEVLQG-TSFSTALIITTWQK-----LAPLALMFLTH 116
Cdd:PRK12644  184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAApTPVSAYLHAAAMVKagiylVARLAPGFADV 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 117 NSLSPSILMMmGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMTAVMPL----APNLALLNLALYLLMTATTFIMLMFS 192
Cdd:PRK12644  264 PVWRPTVLVL-GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIgtrdAALAGLAMLLAHALFKAALFLVVGII 342

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 193 SSKTIT-DLTTASTL---SPPITALMMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMsALLSLFFYLRLAY 268
Cdd:PRK12644  343 DHSTGTrDIRKLSGLgrrQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVL-AGIVLGSILTVAY 421


                  .
gi 1565061357 269 S 269
Cdd:PRK12644  422 S 422
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 8-158 1.40e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.10  E-value: 1.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   8 LSIIPV---ISKQHHPRSTEATTKYFLTQAAASAMLLFASTTNAWYTG--TWDISQLTYQ--------PACIMLTVALSM 74
Cdd:PRK12561  118 LELVPVyllISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDtfTFDLAELGAKsyplalelLLYAGFLIAFGV 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  75 KLGLAPLHFWLPEVLQGTSFSTALIIT-TWQKLAPLALMFL-------THNSLSPsILMMMGLLSTLIGGWGGLNQTQTR 146
Cdd:PRK12561  198 KLPIFPLHTWLPDAHGEASAPVSMILAgVLLKMGGYALIRFnvqmlpdAHVYFAP-ALAILGVVNIIYGALNAFAQDNVK 276

                         170
                  ....*....|..
gi 1565061357 147 KIMAFSSIAHLG 158
Cdd:PRK12561  277 RRLAYSSVSHMG 288
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 61-238 1.71e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.02  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  61 YQPACIMLTVALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLALM-----FLTHNSLSPSILMMMGLLSTLIG 135
Cdd:MTH00032  224 FAIIGILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFA 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 136 GWGGLNQTQTRKIMAFSSIAHLGWMTAVMplaPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTL--------- 206
Cdd:MTH00032  304 ATVGLVQNDLKKVIAYSTCSQLGYMVLII---GIEGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTVDEQdmrkmggli 380

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1565061357 207 -SPPITALMMTL-LMSLGGLPPLTGFVPKWLILQ 238
Cdd:MTH00032  381 hSIPFTYTMMLIgSFSIMGLPYLTGFYSKDLILE 414
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
25-266 1.91e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.78  E-value: 1.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  25 ATTKYFLTQAAASAMLLFASTTNAWYTG----------TWDISQLTYQPACIMLTVALSMKLGLAPLHFWLPEVLQGTSF 94
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGstsfdydaisTQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  95 STALIIT-TWQKLAPLAL------MFLTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM----TAV 163
Cdd:PRK07363  238 AVAILLGgVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYIlvaaAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 164 MPLAPNLALLNLALYLLMTATTFIMLMFSSSKTIT-DLTTASTLSPPI------TALMMTLLMSLGGLPPLTGFVPKWLI 236
Cdd:PRK07363  318 TQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTrDLDVLNGLMNPIrglpltSALLVLAGMASAGIPGLVGFVAEFIV 397

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1565061357 237 LQ-ELTNHNFPTTATIMAmSALLSLFFYLRL 266
Cdd:PRK07363  398 FQgSFSTFPIPTLLCIVA-SGLTAVYFVILL 427
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 261-303 1.94e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 38.39  E-value: 1.94e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1565061357 261 FFYLRLAYSSTLTSFPTTTNTPYKWRLSPKTVTSPMCTMLTLS 303
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLS 43
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-275 2.67e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 42.50  E-value: 2.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYF--LTQAA-----ASAMLLFASTTNAWYTGTWDISQLTYQPACIMLTVALS 73
Cdd:PRK06589  143 VCYELLTISTAFLIGHTRNNISLSGGYKYLkiLMISAlllflPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIA 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  74 mKLGLAPLHFWLPEVLQGTSFSTAL---IITTWQKLAPL------------ALMFLTHNSLSPSILMMMGLLSTLIGgwg 138
Cdd:PRK06589  223 -KTAIFPVHSWLPAAMVAHYPVSALlhaVIVVKTGLFCIykillyifglsyLQRIFAEFNWLIFIPIVSIFYSSLKA--- 298

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 139 gLNQTQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNLALYLLMTATTFIMLMFSSSKTIT-------DLTTASTLSPPIT 211
Cdd:PRK06589  299 -LKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSlkkedqvDKLHGTSKSFPLI 377

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1565061357 212 ALMMTL-LMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAM----SALLSLFFYLRLAYSSTLTSF 275
Cdd:PRK06589  378 SFIISIsSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLvviaSSILSALYLLKILSSIYKPSL 446
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 62-303 2.76e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 2.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  62 QPACIMLTVALSMKLGLAPLHFWLpevLQGTSFSTA----------------LIITTWQKLAPLALMFLThnSLSPSILM 125
Cdd:PRK12662  209 QIGVLFIMVGLFIKAALFPFHKWL---IQAYSEAPSfisvffsgtstkvmiyLIIRIVYDVFKANFVFTT--LPFNNVFM 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 126 MMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGW---MTAVMPLAPNLALLNLALYLLMTATTFIMLMFSSS-----KTI 197
Cdd:PRK12662  284 ILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYiilAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISyhfgtTKL 363

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 198 TDLTTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQELTNHNFPTTATIMAMSALLSLFFYLRLAYSSTLTSFPT 277
Cdd:PRK12662  364 EDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIVEALYFESRMV 443

                         250       260
                  ....*....|....*....|....*.
gi 1565061357 278 TTNTPYKWRLSPKTVTSPMCTMLTLS 303
Cdd:PRK12662  444 ESKANDKAFKTPNAMVLCIWIMAILS 469
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
21-269 4.97e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.56  E-value: 4.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  21 RSTEATTKYFLTQAAASAMLLFASTTNAWYTGTWDISQLTY----QPACIMLTVALSMKL-------GLAPLHFWLPEVL 89
Cdd:PRK06277  147 EAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvNPTSPVIYGGLLLLIfgllygsGLPPFHTIKSDIY 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  90 QGTSFSTALIITTWQKLAPLALMF--------LTHNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMT 161
Cdd:PRK06277  227 AKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVA 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 162 AVMPLAPNLALLNLALYLLMTATTFIMLmFSSSKTITDLTTASTLSP--------PITALMMTLL-MSLGGLPPLTGFVP 232
Cdd:PRK06277  307 AGLALGTPLGIVAGIFHAINHVIYKSAL-FLGAGIVSYRTKTSNLRKlggllpvmPVVAFMVLCAkLAISGVPPFNGFQS 385

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1565061357 233 KWLILQELTNHNFPTTATIMAMSALLSLFFYLRLAYS 269
Cdd:PRK06277  386 KLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYL 422
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 30-240 5.05e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 41.70  E-value: 5.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  30 FLTQAAASAMLLFASTTNAWY-TGTWDISQLTYQPACIMLTVALSMKLGLAPLHF--WLPEVlQGTSFSTALIITTwqkl 106
Cdd:PRK06459  125 FMAFGELSTVLILAGFAWAFIiSGTTNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIA-HGNAPSNFSAILS---- 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 107 APLALM-------FLTHNSLSPS-----ILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMTAVMPLAPNLALLN 174
Cdd:PRK06459  200 ATMTLMgvygilkMTILTQTIPIgyfglTILAIGAFSILFGALYAYVSENVKGLLAFSTIENNGAILVALGLYMVTKQLI 279

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1565061357 175 LALYLLMTATTFI-----------MLMFSSSKTITDLTTASTLSPPITALMMTLL-MSLGGLPPLTGFVPKWLILQEL 240
Cdd:PRK06459  280 TSIEHFSLITVILysfahsvaktgLFLSSGLQEKQSITYSKKIRNRWIELGLTLLaSSLSGLLPNIGGVASWLLLESL 357
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 70-280 7.32e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.06  E-value: 7.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  70 VALSMKLGLAPLHFWLPEV-LQGTSFSTALIITTWQKLAPLALMFLT-------HNSLSPSILMMmGLLSTLIGGWGGLN 141
Cdd:MTH00226  238 LAMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGGYGLVRLSwpilplgAQNLAPAVIAM-GIVGIVYGSFATCR 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 142 QTQTRKIMAFSSIAHLGWMTAVMPLA----PNLALLNLALYLLMTATTFIMLMFSSSKTITDLTT---ASTLSPPI--TA 212
Cdd:MTH00226  317 QIDVKRLVAYSSVAHMGLVSITLVTHdiigLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKyyrGLSITMPIwgTI 396

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1565061357 213 LMMTLLMSLgGLPPLTGFVPKWLILQELTNHN-----FPTTATImaMSALLSLFFYLRLAY--SSTLTSFPTTTN 280
Cdd:MTH00226  397 MIVTSLANV-AVPPSGNFIGEYLSILSSFNWNpiigvFVCSGVI--LSAVYSFYFANRVTFgaPGNLITFARDVN 468
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-238 8.75e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 40.68  E-value: 8.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKYF---------------LTQAAASAMLLFASTTNAWYTGTWDISQLtyQPAC 65
Cdd:PRK06458  135 VAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEMAILWTELLKHASLL--DPTL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  66 IMLTVALSM-----KLGLAPLHFWLPE-----------VLQGTSFSTAL-IITTWQKLAPLALmfltHNSLSPSILMMMG 128
Cdd:PRK06458  213 MKLAFVFLLigfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAI----GSDFPGRLLLIFG 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 129 LLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMTAVMPLAPNLALLNLALYLLMTATTFIMLMFSS--------SKTITDL 200
Cdd:PRK06458  289 LLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASgnvlqkygTRDINVI 368

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1565061357 201 TTASTLSPPITALMMTLLMSLGGLPPLTGFVPKWLILQ 238
Cdd:PRK06458  369 RGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-241 1.32e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 40.32  E-value: 1.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357   1 VGLELNTLSIIPVISKQHHPRSTEATTKY-FLTQAA-----ASAMLLFASTtnawytGTWDISQLTYQP--ACIMLTVAL 72
Cdd:PRK07234  121 VALEVLSIATFLLVAYPRTDRAIWVGLRYlFYSNVAmlfylIGAVLVYQAN------GTFAFSGLATADpeAFALIALGL 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  73 SMKLGLAPLHFWLPEVL-QGTSFSTALI--ITTWQKLAPLALMFLTHNSLSPsILMMMGLLSTLIGGWGGLNQTQTRKIM 149
Cdd:PRK07234  195 LVKGGIFVSGLWLPLTHsEAEPPVSALLsgVVVKAGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRML 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 150 AFSSIAHLGWMTAvmplAPNLALLNLALYLLMTATTFIMLMFSSSKTITDLTTASTLSPPITALMMTLLmSLGGLPPLTG 229
Cdd:PRK07234  274 AFSTISQLGFILA----APLVGGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPLTMASF-SIAGFPLLAG 348

                         250
                  ....*....|..
gi 1565061357 230 FVPKWLILQELT 241
Cdd:PRK07234  349 FVSKVLTLKNLL 360
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 26-303 1.37e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 40.32  E-value: 1.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  26 TTKYFLTQAAASAMLLFASTTNAWYTGTWD-------ISQLTYQPACIMLTVAL------SMKLGLAPLHFWLPEVLQGT 92
Cdd:PRK07691  160 SIKYVLINVVSSAFFVVAVAILYSVVGTLNmadisvkIAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLPGSYYAP 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  93 SFS-TALIITTWQKLAPLALM-----FLTHN-SLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMTA--V 163
Cdd:PRK07691  240 PIAiAALFGALLTKVGVYAIArtftlFFSHDtSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVgvA 319

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 164 MPLAPNLALLNLALYLLMTATT----FIMLMFSSSKTiTDLTTASTL--SPPITALMMTLLM-SLGGLPPLTGFVPKWLI 236
Cdd:PRK07691  320 MMTESGMIGAIYYLIHDMIVKAalflLIGIMIKITGT-TDLKKMGGLikRYPVLGWMFFIAAlSLAGIPPLSGFYGKFFI 398

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1565061357 237 LQELTNHNFPTTATIMAMSALLSLFFYLRLAYSSTltsFPTTTNTPYKWRLSPKTVTSPMCTMLTLS 303
Cdd:PRK07691  399 VEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGF---WGEPKGYDLNNKVPVKKLLLPAVVLVAIT 462
PRK12646 PRK12646
DUF4040 family protein;
51-261 3.33e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.97  E-value: 3.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  51 TGTWDISQLTYQ-----------PACIMLTVALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLALMF-----L 114
Cdd:PRK12646  188 TGTNNITEILGQadhiknhglfiPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFrftplL 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 115 THNSLSPSILMMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGwMTAVMPLAPNLALLNLALYLlmtATTFIMLMF--- 191
Cdd:PRK12646  268 GLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLG-MIMAMVGIGGGYAQHQQDAI---ASIYVFVLFaal 343

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 192 -----------------------SSSKTITDLTTASTLSPpITALMMTL-LMSLGGLPPLTGFVPKWLILQELTN----- 242
Cdd:PRK12646  344 fhlmnhaifkcalfmgvgiidheAGTRDIRILSGMRQLFP-KMNLVMTIaALSMAGVPFLNGFLSKEMFLDALTQtgqls 422

                         250       260
                  ....*....|....*....|
gi 1565061357 243 -HNFPTTATIMAMSALLSLF 261
Cdd:PRK12646  423 qFSLISMIIIVFIGVIASIF 442
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 64-268 4.94e-03

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 38.42  E-value: 4.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357  64 ACIMLTVALSMKLGLAPLHFWLPEVLQGTSFSTALIITTWQKLAPLALMFLTHN--SLSPSIL---MMMGLLSTLIGGWG 138
Cdd:TIGR01974 215 ICLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPlfELSPTALylvTIIGAITALFAATV 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061357 139 GLNQTQTRKIMAFSSIAHLGWMTAVMplapNLALLNLALYLLMTATTFIMLMFSSSKTIT-------DLTTASTLSP--P 209
Cdd:TIGR01974 295 ALVQNDIKRILAYSTMSQLGYMFLAL----GVGAYAAAIFHLMTHAFFKALLFLGAGSVIhamhheqDIRKMGGLRKkmP 370

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1565061357 210 ITALMMTL-LMSLGGLPPLTGFVPKWLILQE-LTNHNFPTTATIMAMSALLSLFFYLRLAY 268
Cdd:TIGR01974 371 VTYITFLIgSLALIGFPGFAGFFSKDLILEAaFASGTHSFLFVAGLIGAFLTAFYSFRLIF 431
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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