NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1565061369|gb|QAX32912|]
View 

NADH dehydrogenase subunit 2, partial (mitochondrion) [Cryptoblepharus megastictus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-155 1.08e-84

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 252.05  E-value: 1.08e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLTMALAMKLGLAP 80
Cdd:MTH00112   31 TGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAP 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1565061369  81 LHFWLPEVLQGTSLGTALIITTWQKLAPLALMYLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:MTH00112  111 FHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIA 185
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-155 1.08e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 252.05  E-value: 1.08e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLTMALAMKLGLAP 80
Cdd:MTH00112   31 TGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAP 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1565061369  81 LHFWLPEVLQGTSLGTALIITTWQKLAPLALMYLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:MTH00112  111 FHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIA 185
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-155 7.17e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 77.74  E-value: 7.17e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPII-SKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACT-----------ML 68
Cdd:pfam00361   9 LGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssgllllflLI 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  69 TMALAMKLGLAPLHFWLPEVLQGTSL-GTALIITTWQKLAPLALM-----YLTHSSLNPSILITLGLLSALIGGWGGLNQ 142
Cdd:pfam00361  89 LVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGSLAALVQ 168

                         170
                  ....*....|...
gi 1565061369 143 TQTRKIMAFSSIA 155
Cdd:pfam00361 169 TDIKRLLAYSSIS 181
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-155 8.63e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 75.92  E-value: 8.63e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIIS-KHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQL--------TYQP----ACTM 67
Cdd:COG1007   129 LGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaalaaggANSPllllGLVL 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  68 LTMALAMKLGLAPLHFWLPEVLQGTSLGTALIITTWQKLAPLA----LMYLTHSSLNPS---ILITLGLLSALIGGWGGL 140
Cdd:COG1007   209 VLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFPGLAADwqlLLAVLAVLSMTVGNLAAL 288

                         170
                  ....*....|....*
gi 1565061369 141 NQTQTRKIMAFSSIA 155
Cdd:COG1007   289 AQTNVKRMLAYSSIA 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-155 5.19e-13

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 64.97  E-value: 5.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSI-IPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLT---------- 69
Cdd:TIGR01770 129 LGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNisllllgivl 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  70 --MALAMKLGLAPLHFWLPEVLQGTSLGTALIITTWQKLAPLALM-------YLTHSSLNPSILITLGLLSALIGGWGGL 140
Cdd:TIGR01770 209 ilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGFSEAWQIFLAIIAFLSMLIGNFGAL 288

                         170
                  ....*....|....*
gi 1565061369 141 NQTQTRKIMAFSSIA 155
Cdd:TIGR01770 289 AQKKVKRLLAYSSIS 303
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-155 1.08e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 252.05  E-value: 1.08e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLTMALAMKLGLAP 80
Cdd:MTH00112   31 TGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAP 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1565061369  81 LHFWLPEVLQGTSLGTALIITTWQKLAPLALMYLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:MTH00112  111 FHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIA 185
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 2-155 1.35e-79

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 238.94  E-value: 1.35e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   2 GLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLTMALAMKLGLAPL 81
Cdd:MTH00135   32 GLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPL 111

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1565061369  82 HFWLPEVLQGTSLGTALIITTWQKLAPLALMYLTHSSlNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:MTH00135  112 HFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIA 184
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-155 3.10e-76

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 230.58  E-value: 3.10e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLTMALAMKLGLAP 80
Cdd:MTH00070   31 MGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAP 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1565061369  81 LHFWLPEVLQGTSLGTALIITTWQKLAPLALMYLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:MTH00070  111 FHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIA 185
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-155 3.42e-72

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 220.10  E-value: 3.42e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLTMALAMKLGLAP 80
Cdd:MTH00105   31 IGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAP 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1565061369  81 LHFWLPEVLQGTSLGTALIITTWQKLAPLALMYLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:MTH00105  111 FHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIA 185
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-155 9.66e-62

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 193.61  E-value: 9.66e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLTMALAMKLGLAP 80
Cdd:MTH00041   31 LGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAP 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1565061369  81 LHFWLPEVLQGTSLGTALIITTWQKLAPLALMYLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:MTH00041  111 CHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIA 185
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-155 1.62e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 187.87  E-value: 1.62e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLTMALAMKLGLAP 80
Cdd:MTH00200   31 LGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAP 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1565061369  81 LHFWLPEVLQGTSLGTALIITTWQKLAPLALMYLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:MTH00200  111 GHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIA 185
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-154 1.25e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 136.11  E-value: 1.25e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWhtgtwdISQLTYQPACTMLTMALAMKLGLAP 80
Cdd:MTH00160   32 MGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNISSMLINSSLLLKLGAAP 105

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1565061369  81 LHFWLPEVLQGTSLGTALIITTWQKLAPLALMYLThssLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSI 154
Cdd:MTH00160  106 FHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSI 176
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-155 1.04e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 125.77  E-value: 1.04e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISqltyqpacTMLTMALAMKLGLAP 80
Cdd:MTH00144   31 VGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCLKLGLFP 102

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1565061369  81 LHFWLPEVLQGTSLGTALIITTWQKLAPLALMYLTHSSLNP-SILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:MTH00144  103 FHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALLAYSSIS 178
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 2-154 3.26e-29

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 108.71  E-value: 3.26e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   2 GLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLnawhtgTWDISQLTYQPACTMLTMALAMKLGLAPL 81
Cdd:MTH00011   34 GMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLKNITALMLLVSLMLKLGMAPC 107

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1565061369  82 HFWLPEVLQGTSLGTALIITTWQKLAPLALMYLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSI 154
Cdd:MTH00011  108 HFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSI 180
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-154 3.14e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 95.51  E-value: 3.14e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISqltyqpaCTMLTMALAMKLGLAP 80
Cdd:MTH00197   25 IGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS-------VVLVILGLLLKLGAFP 97

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1565061369  81 LHFWLPEVLQGTSLGTALIITTWQKLAPLALmyLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSI 154
Cdd:MTH00197   98 FHFWVPSVMESLSWFNCFLLATWQKLAPLLI--LAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSI 169
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-155 7.17e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 77.74  E-value: 7.17e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPII-SKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACT-----------ML 68
Cdd:pfam00361   9 LGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssgllllflLI 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  69 TMALAMKLGLAPLHFWLPEVLQGTSL-GTALIITTWQKLAPLALM-----YLTHSSLNPSILITLGLLSALIGGWGGLNQ 142
Cdd:pfam00361  89 LVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGSLAALVQ 168

                         170
                  ....*....|...
gi 1565061369 143 TQTRKIMAFSSIA 155
Cdd:pfam00361 169 TDIKRLLAYSSIS 181
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-155 8.63e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 75.92  E-value: 8.63e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIIS-KHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQL--------TYQP----ACTM 67
Cdd:COG1007   129 LGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaalaaggANSPllllGLVL 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  68 LTMALAMKLGLAPLHFWLPEVLQGTSLGTALIITTWQKLAPLA----LMYLTHSSLNPS---ILITLGLLSALIGGWGGL 140
Cdd:COG1007   209 VLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFPGLAADwqlLLAVLAVLSMTVGNLAAL 288

                         170
                  ....*....|....*
gi 1565061369 141 NQTQTRKIMAFSSIA 155
Cdd:COG1007   289 AQTNVKRMLAYSSIA 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-155 1.88e-15

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 72.16  E-value: 1.88e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKH-HHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACT------------M 67
Cdd:PRK05777  130 LGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALADGsgnsllllfglvF 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  68 LTMALAMKLGLAPLHFWLPEVLQGTSLGTALIITTWQKLAPLALMY-LTHSSLNPS------ILITLGLLSALIGGWGGL 140
Cdd:PRK05777  210 LLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrLLVVAFGGLsedwqqVLAIIAIASMLVGNLAAL 289

                         170
                  ....*....|....*
gi 1565061369 141 NQTQTRKIMAFSSIA 155
Cdd:PRK05777  290 SQTNIKRLLAYSSIA 304
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 3-155 3.53e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 71.21  E-value: 3.53e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   3 LELNTLSI-IPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDIS--QLTYQPACTM-----------L 68
Cdd:MTH00196   22 IELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyiNLVLNSGQSFssvsvpigyllI 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  69 TMALAMKLGLAPLHFWLPEVLQGTSLGTALIITTWQKLAPLALmyLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKI 148
Cdd:MTH00196  102 IVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSI--LVSIGLNVNILLIGGLFSLFVGAIGALNQTKIKRL 179


                  ....*..
gi 1565061369 149 MAFSSIA 155
Cdd:MTH00196  180 LAYSGIG 186
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 2-154 3.72e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 65.42  E-value: 3.72e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   2 GLELNTLSI-IPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDI----SQLTYQPACTMLTMALAMKL 76
Cdd:MTH00199  125 AIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGKILITISLLFKL 204

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1565061369  77 GLAPLHFWLPEVLQGTSLGTALIITTWQKLAPLALmyLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFSSI 154
Cdd:MTH00199  205 SAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSI--LVQIGPVTNVVLICAVLSIIYGAIGALNQTKIKRLLAYSGI 280
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-155 5.19e-13

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 64.97  E-value: 5.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSI-IPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLT---------- 69
Cdd:TIGR01770 129 LGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNisllllgivl 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  70 --MALAMKLGLAPLHFWLPEVLQGTSLGTALIITTWQKLAPLALM-------YLTHSSLNPSILITLGLLSALIGGWGGL 140
Cdd:TIGR01770 209 ilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGFSEAWQIFLAIIAFLSMLIGNFGAL 288

                         170
                  ....*....|....*
gi 1565061369 141 NQTQTRKIMAFSSIA 155
Cdd:TIGR01770 289 AQKKVKRLLAYSSIS 303
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-155 1.46e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 63.63  E-value: 1.46e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTY----------QPACTMLTM 70
Cdd:COG0651   134 VFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLLV 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  71 ALAMKLGLAPLHFWLPE-----------VLQGTSLGTAL--IITTWQKLAPLALMYLTHsslnpSILITLGLLSALIGGW 137
Cdd:COG0651   214 GFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLG-----TLLLVLGLLTMLVGAL 288

                         170
                  ....*....|....*...
gi 1565061369 138 GGLNQTQTRKIMAFSSIA 155
Cdd:COG0651   289 GALAQRDLKRLLAYSSVS 306
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 68-154 1.93e-08

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 52.17  E-value: 1.93e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  68 LTMALAMKLGLAPLHFWLPEVLQGTSLGTALIITTWQKLapLALMYLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRK 147
Cdd:MTH00198  305 ITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKR 382


                  ....*..
gi 1565061369 148 IMAFSSI 154
Cdd:MTH00198  383 LLAYSGI 389
ndhB CHL00049
NADH dehydrogenase subunit 2
 21-155 4.04e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 48.08  E-value: 4.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  21 RSTEATTKYFLTQAAASATLLFAST----LNAWHTGTWDI------SQLTYQPAC----TMLTMALAMKLGLAPLHFWLP 86
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFSwlygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1565061369  87 EVLQGTSLGTALIITTWQKLAPLAL----MYLTHSSLNP---SILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAASALatriFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 8-155 4.83e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 45.07  E-value: 4.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   8 LSIIP---IISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTG--TWDISQLTYQP--------ACTMLTMALAM 74
Cdd:COG1008   142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGalTFDIAELAAAPlpltaqllLFLAFFIAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  75 KLGLAPLHFWLPEVL-QGTSLGTALIITTWQK------------LAPLALMYLThsslnpSILITLGLLSALIGGWGGLN 141
Cdd:COG1008   222 KVPMFPFHTWLPDAHvEAPTAGSVLLAGVLLKmggygllrfalpLFPEASAYFA------PLLAALGVIGIIYGALVALA 295

                         170
                  ....*....|....
gi 1565061369 142 QTQTRKIMAFSSIA 155
Cdd:COG1008   296 QTDLKRLIAYSSVS 309
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
20-155 5.64e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 44.66  E-value: 5.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  20 PRSTEATTKYFLTQAAASATLLFASTL----NAWHTGTWDISQLTYQPACTMLTMAL-------AMKLGLAPLHFWLPEV 88
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYGSSLlyglSGGSTQLSAIALALITSPSLGLALALvfviagiAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1565061369  89 LQGTSLGTALIITTWQKLAPLALMYLTHSSLNPS-------ILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSfdeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIG 310
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-154 2.49e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 43.16  E-value: 2.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHH-PRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTM----------LT 69
Cdd:PRK08376  148 VFLEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPtvvakialalFI 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  70 MALAMKLGLAPLHFWLPEVLQG--TSLGTALIITTWQKLAPLA--LMYLTHSSLNPS----ILITLGLLSALIGGWGGLN 141
Cdd:PRK08376  228 AGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALArvLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVV 307

                         170
                  ....*....|...
gi 1565061369 142 QTQTRKIMAFSSI 154
Cdd:PRK08376  308 QKDVKRLLAYHSV 320
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 25-155 3.21e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 42.62  E-value: 3.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  25 ATTKYFLTQAAASATLLFASTLNAW-HTGTWDISQLTYQPACTMLTM--------ALAMKLGLAPLHFWLPEV-LQGTSL 94
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELLNLPLPFGVQTwlflaffiAFAVKVPLFPLHTWLPDAhVEAPTA 236

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1565061369  95 GTALIITTWQKLAPLALMYL-------THSSLNPsILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:TIGR01972 237 GSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSIS 303
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 4-155 5.09e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.91  E-value: 5.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   4 ELNTLS---IIPIISKhhhpRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDI----------SQLTYQPACTMLTM 70
Cdd:PRK08668  128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglindTSTGFALIVFLFLL 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  71 ALAM-KLGLAPLHFWLPE-----------VLQG--TSLGT-------ALIITTwqKLAPLALMYLTHSSLNpSILITLGL 129
Cdd:PRK08668  204 AFGVaKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAygfllvlYVLPGT--KLFSEFGTYRGVPLFN-YILAWLGN 280

                         170       180
                  ....*....|....*....|....*.
gi 1565061369 130 LSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:PRK08668  281 ISIIVGTLMAILQEDIKKLIAYSSVA 306
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-155 9.10e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 41.40  E-value: 9.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   1 VGLELNTLSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQL--------TYQPACTMLTMAL 72
Cdd:PRK08375  133 VFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagalaenpTVVTAFGFVLLAL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  73 AMKLGLAPLHFWLPEVLQGTSLG-TALIITTWQKLAPLALMYLTHSSLNPS---------ILITLGLLSALIGGWGGLNQ 142
Cdd:PRK08375  213 ALKAAVFPLHTWLPRAYPAAPPVvTALLSGLVTKVAVYALIRIYFTVFGGDfrfalglgwLLAVLALLSMLVGSLAALGQ 292

                         170
                  ....*....|...
gi 1565061369 143 TQTRKIMAFSSIA 155
Cdd:PRK08375  293 DDVKRVLAYSTVS 305
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 25-155 1.84e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 37.32  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  25 ATTKYFLTQAAASATLLFASTLNAWHTG--TWDISQLTYQPACTMLTM--------ALAMKLGLAPLHFWLPE------- 87
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDtfTFDLAELGAKSYPLALELllyagfliAFGVKLPIFPLHTWLPDahgeasa 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1565061369  88 ----VLQGTSL---GTALIITTWQKLaPLALMYLThsslnpSILITLGLLSALIGGWGGLNQTQTRKIMAFSSIA 155
Cdd:PRK12561  218 pvsmILAGVLLkmgGYALIRFNVQML-PDAHVYFA------PALAILGVVNIIYGALNAFAQDNVKRRLAYSSVS 285
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 17-155 2.13e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 37.44  E-value: 2.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  17 HHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQL-----------TYQPACTMLTMALAMKLGLAPLHFWL 85
Cdd:COG1009   155 YEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilsspLLTLILLLLLLGAFGKSAQFPLHFWL 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  86 PEVLQG-T------------SLGTALIIttwqKLAPLalmyLTHSSLNPSILITLGLLSALIGGWGGLNQTQTRKIMAFS 152
Cdd:COG1009   235 PDAMEGpTpvsallhaatmvKAGVYLLA----RLSPL----FALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYS 306


                  ...
gi 1565061369 153 SIA 155
Cdd:COG1009   307 TVS 309
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 50-151 2.63e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 37.21  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  50 HTGTWDISQL-TYQPACTMLTMALAM-------KLGLAPLHFWLPEVLQGTS-------------LGTALIittwqklAP 108
Cdd:PRK12644  183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTpvsaylhaaamvkAGIYLV-------AR 255

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1565061369 109 LALMYLTHSSLNPsILITLGLLSALIGGWGGLNQTQTRKIMAF 151
Cdd:PRK12644  256 LAPGFADVPVWRP-TVLVLGLATMLLGGWRALRQHDLKLILAY 297
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 8-155 2.77e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 37.10  E-value: 2.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   8 LSIIP---IISKHHHPRSTEATTKYFLTQAAASATLLFA----STLNAWHTGTWDISQL-TYQPACTMLT-------MAL 72
Cdd:PRK05846  142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlNLPLPPGVQYwlflaffIAF 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  73 AMKLGLAPLHFWLPEV-LQGTSLGTALIITTWQKLAPLAL------MYLTHSSLNPSILITLGLLSALIGGWGGLNQTQT 145
Cdd:PRK05846  222 AVKMPMFPLHTWLPDAhVQAPTAGSVLLAGILLKMGAYGLlrfslpLFPDASHEFAPIIITLGVIAIIYGALVALAQTDI 301

                         170
                  ....*....|
gi 1565061369 146 RKIMAFSSIA 155
Cdd:PRK05846  302 KKLIAYSSIS 311
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 70-155 3.93e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 36.44  E-value: 3.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369  70 MALAMKLGLAPLHFWLPEV-LQGTSLGTALIITTWQKLAPLALMYLT-------HSSLNPSIlITLGLLSALIGGWGGLN 141
Cdd:MTH00226  238 LAMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGGYGLVRLSwpilplgAQNLAPAV-IAMGIVGIVYGSFATCR 316

                          90
                  ....*....|....
gi 1565061369 142 QTQTRKIMAFSSIA 155
Cdd:MTH00226  317 QIDVKRLVAYSSVA 330
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 8-154 6.19e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 35.86  E-value: 6.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565061369   8 LSIIPIISKHHHPRSTEATTKYFLTQAAASATLLFASTLNAWHTGTWDISQLTYQPACTMLT-----MALAMKLGLAPLH 82
Cdd:PRK08667  146 SSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFH 225

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1565061369  83 FWLPEVLQGT-SLGTALIITTWQKLAPLALMYLTHSSLNPSI-----LITLGLLSALIGGWGGLNQTQTRKIMAFSSI 154
Cdd:PRK08667  226 KWLPYAHPASpSNVSALMSGVMLKVAVYGLVRFLMDVLSPELwwgvlILLAGSISALLGVIYALKEHDLKGLLAYSSI 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH