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Conserved domains on  [gi|1585625928|gb|QBI90133|]
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Myb2, partial [Quercus ilex]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 1000535)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein may be involved in the regulation of gene expression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03212 super family cl31985
Transcription repressor MYB5; Provisional
 1-115 2.17e-49

Transcription repressor MYB5; Provisional


The actual alignment was detected with superfamily member PLN03212:

Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 161.40  E-value: 2.17e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585625928   1 EDKMLTDYIKIHGERKWCNVARKAGLKRCGNSCRLRWLNYLRPDIKRGNISPAEEDLIIRLHRLLGNRWSLIAGRLPGRT 80
Cdd:PLN03212   32 EDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRT 111

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1585625928  81 DNEIKNYWNTVLRRKL----INGKQHK---QNTILRPSNEIT 115
Cdd:PLN03212  112 DNEIKNYWNTHLRKKLlrqgIDPQTHKpldANNIHKPEEEVS 153
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 1-115 2.17e-49

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 161.40  E-value: 2.17e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585625928   1 EDKMLTDYIKIHGERKWCNVARKAGLKRCGNSCRLRWLNYLRPDIKRGNISPAEEDLIIRLHRLLGNRWSLIAGRLPGRT 80
Cdd:PLN03212   32 EDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRT 111

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1585625928  81 DNEIKNYWNTVLRRKL----INGKQHK---QNTILRPSNEIT 115
Cdd:PLN03212  112 DNEIKNYWNTHLRKKLlrqgIDPQTHKpldANNIHKPEEEVS 153
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 47-92 2.12e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.53  E-value: 2.12e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1585625928  47 RGNISPAEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTVL 92
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 1-202 1.44e-12

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 65.96  E-value: 1.44e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585625928   1 EDKMLTDYIKIHGERKWCNVARKAGlKRCGNSCRLRWLNYLRPDIKRGNISPAEEDLIIRLHRLLGNRWSLIAGRLPGRT 80
Cdd:COG5147    27 EDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRT 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585625928  81 DNEIKNYWNTVLRRKLingKQHKQNTILRpsNEITSsttsvsngAKTNAVKCKKIFETSESHELETFgsaSNALEEPSKE 160
Cdd:COG5147   106 AQQCVERYVNTLEDLS---STHDSKLQRR--NEFDK--------IDPFNENSARRPDIYEDELLERE---VNREASYRLR 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1585625928 161 GCFVNEnVLNESKSKEDCSPNFSSSFNYMDELLMSGVSGSDF 202
Cdd:COG5147   170 VPRVSK-ADVKPREKGEENNPDIEDLQEMKELKSASITRHLI 210
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
47-94 2.84e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.46  E-value: 2.84e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1585625928   47 RGNISPAEEDLIIRLHRLLG-NRWSLIAGRLPGRTDNEIKNYWNTVLRR 94
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 51-92 1.75e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 54.50  E-value: 1.75e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1585625928  51 SPAEEDLIIRLHRLLG-NRWSLIAGRLPGRTDNEIKNYWNTVL 92
Cdd:cd00167     3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 1-115 2.17e-49

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 161.40  E-value: 2.17e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585625928   1 EDKMLTDYIKIHGERKWCNVARKAGLKRCGNSCRLRWLNYLRPDIKRGNISPAEEDLIIRLHRLLGNRWSLIAGRLPGRT 80
Cdd:PLN03212   32 EDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRT 111

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1585625928  81 DNEIKNYWNTVLRRKL----INGKQHK---QNTILRPSNEIT 115
Cdd:PLN03212  112 DNEIKNYWNTHLRKKLlrqgIDPQTHKpldANNIHKPEEEVS 153
PLN03091 PLN03091
hypothetical protein; Provisional
 1-203 2.56e-43

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 150.90  E-value: 2.56e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585625928   1 EDKMLTDYIKIHGERKWCNVARKAGLKRCGNSCRLRWLNYLRPDIKRGNISPAEEDLIIRLHRLLGNRWSLIAGRLPGRT 80
Cdd:PLN03091   21 EDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRT 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585625928  81 DNEIKNYWNTVLRRKL----INGKQHKqntilrPSNEITSSTTSVSNGAKTNAVKCKKIfeTSESHELETFGSASNALEE 156
Cdd:PLN03091  101 DNEIKNLWNSCLKKKLrqrgIDPNTHK------PLSEVENGEDKNPPTDDKSDKASSVV--SNELNLLKADNSKPLAALQ 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1585625928 157 PSKEGCFVNENVLNESKSKEDCSPNFSSSFNYMDELLMSGVSGSDFW 203
Cdd:PLN03091  173 EKRSSSISPAGYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKDFF 219
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 47-92 2.12e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.53  E-value: 2.12e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1585625928  47 RGNISPAEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTVL 92
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 1-202 1.44e-12

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 65.96  E-value: 1.44e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585625928   1 EDKMLTDYIKIHGERKWCNVARKAGlKRCGNSCRLRWLNYLRPDIKRGNISPAEEDLIIRLHRLLGNRWSLIAGRLPGRT 80
Cdd:COG5147    27 EDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRT 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585625928  81 DNEIKNYWNTVLRRKLingKQHKQNTILRpsNEITSsttsvsngAKTNAVKCKKIFETSESHELETFgsaSNALEEPSKE 160
Cdd:COG5147   106 AQQCVERYVNTLEDLS---STHDSKLQRR--NEFDK--------IDPFNENSARRPDIYEDELLERE---VNREASYRLR 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1585625928 161 GCFVNEnVLNESKSKEDCSPNFSSSFNYMDELLMSGVSGSDF 202
Cdd:COG5147   170 VPRVSK-ADVKPREKGEENNPDIEDLQEMKELKSASITRHLI 210
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
47-94 2.84e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.46  E-value: 2.84e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1585625928   47 RGNISPAEEDLIIRLHRLLG-NRWSLIAGRLPGRTDNEIKNYWNTVLRR 94
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 51-92 1.75e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 54.50  E-value: 1.75e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1585625928  51 SPAEEDLIIRLHRLLG-NRWSLIAGRLPGRTDNEIKNYWNTVL 92
Cdd:cd00167     3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 1-41 7.22e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 47.18  E-value: 7.22e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1585625928   1 EDKMLTDYIKIHGERKWCNVARKAGlKRCGNSCRLRWLNYL 41
Cdd:cd00167     6 EDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
1-43 1.57e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 46.45  E-value: 1.57e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1585625928    1 EDKMLTDYIKIHGERKWCNVARKAGlKRCGNSCRLRWLNYLRP 43
Cdd:smart00717   8 EDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 51-100 1.32e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 44.22  E-value: 1.32e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1585625928  51 SPAEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTVLRRKLINGK 100
Cdd:pfam13921   2 TEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGP 51
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 1-41 2.38e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 43.26  E-value: 2.38e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1585625928   1 EDKMLTDYIKIHGERkWCNVARKAGlKRCGNSCRLRWLNYL 41
Cdd:pfam00249   8 EDELLLEAVEKLGNR-WKKIAKLLP-GRTDNQCKNRWQNYL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 1-55 3.04e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 40.37  E-value: 3.04e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1585625928   1 EDKMLTDYIKIHGeRKWCNVARKAGlKRCGNSCRLRWLNYLRPDIKRGNISPAEE 55
Cdd:pfam13921   5 EDEKLLKLVEKYG-NDWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEED 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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