NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1608036071|gb|QBX08174|]
View 

hypothetical protein JavanS225_0009 [Streptococcus satellite phage Javan225]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YobV super family cl28501
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 21-72 3.76e-05

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


The actual alignment was detected with superfamily member COG2378:

Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 41.22  E-value: 3.76e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1608036071  21 AGNPITGAEIALTLKLEERTVQKIINQLItRYGVPIVGVRhGFNRGYFIPED 72
Cdd:COG2378    16 SRRGVTAAELAERLEVSERTIYRDIDALR-ELGVPIEAER-GRGGGYRLRDG 65
 
Name Accession Description Interval E-value
YobV COG2378
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 21-72 3.76e-05

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 41.22  E-value: 3.76e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1608036071  21 AGNPITGAEIALTLKLEERTVQKIINQLItRYGVPIVGVRhGFNRGYFIPED 72
Cdd:COG2378    16 SRRGVTAAELAERLEVSERTIYRDIDALR-ELGVPIEAER-GRGGGYRLRDG 65
HTH_11 pfam08279
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
 21-67 7.19e-04

HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.


Pssm-ID: 429896 [Multi-domain]  Cd Length: 52  Bit Score: 35.10  E-value: 7.19e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1608036071  21 AGNPITGAEIALTLKLEERTVQKIInQLITRYGVPIVGVRhgfNRGY 67
Cdd:pfam08279  10 ARGPISGQELAEKLGVSRRTIRRDI-KILEELGVPIEAEP---GRGY 52
 
Name Accession Description Interval E-value
YobV COG2378
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 21-72 3.76e-05

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 41.22  E-value: 3.76e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1608036071  21 AGNPITGAEIALTLKLEERTVQKIINQLItRYGVPIVGVRhGFNRGYFIPED 72
Cdd:COG2378    16 SRRGVTAAELAERLEVSERTIYRDIDALR-ELGVPIEAER-GRGGGYRLRDG 65
HTH_11 pfam08279
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
 21-67 7.19e-04

HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.


Pssm-ID: 429896 [Multi-domain]  Cd Length: 52  Bit Score: 35.10  E-value: 7.19e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1608036071  21 AGNPITGAEIALTLKLEERTVQKIInQLITRYGVPIVGVRhgfNRGY 67
Cdd:pfam08279  10 ARGPISGQELAEKLGVSRRTIRRDI-KILEELGVPIEAEP---GRGY 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH