NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1608039008|gb|QBX10962|]
View 

hypothetical protein JavanS518_0016 [Streptococcus satellite phage Javan518]

Protein Classification

primase alpha helix C-terminal domain-containing protein( domain architecture ID 10658736)

primase alpha helix C-terminal domain-containing protein similar to Escherichia coli Rep protein of plasmid ColE2-P9 (34 kDa), an essential initiator for plasmid DNA replication

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PriCT_1 smart00942
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 217-282 1.57e-18

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


:

Pssm-ID: 214926  Cd Length: 66  Bit Score: 77.76  E-value: 1.57e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608039008  217 FNGFGDEGGRNVALTKFVGLLFNKWvDCDLETAYELVQIANS-VTTKPLPIDEIDTTFRSILDKELR 282
Cdd:smart00942   1 FLGGVDEGNRNNTLFRLAGRLLRRG-YVDEEEAYALLLAANSaNCNPPLPERELEKTAESAYRRESR 66
 
Name Accession Description Interval E-value
PriCT_1 smart00942
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 217-282 1.57e-18

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 214926  Cd Length: 66  Bit Score: 77.76  E-value: 1.57e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608039008  217 FNGFGDEGGRNVALTKFVGLLFNKWvDCDLETAYELVQIANS-VTTKPLPIDEIDTTFRSILDKELR 282
Cdd:smart00942   1 FLGGVDEGNRNNTLFRLAGRLLRRG-YVDEEEAYALLLAANSaNCNPPLPERELEKTAESAYRRESR 66
PriCT_1 pfam08708
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 217-282 1.04e-05

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 430166  Cd Length: 64  Bit Score: 42.28  E-value: 1.04e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608039008 217 FNGFGDEGGRNVALTKFVGLLFNKWVDcdLETAYELVQIANSVTTKPLPIDEIDTTFRSILDKELR 282
Cdd:pfam08708   1 TLGPVASGGRNNALFRLAGALARRGID--RESVLALLHALNSNLEPPLDESEVEKTVKSVYRYVYA 64
 
Name Accession Description Interval E-value
PriCT_1 smart00942
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 217-282 1.57e-18

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 214926  Cd Length: 66  Bit Score: 77.76  E-value: 1.57e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608039008  217 FNGFGDEGGRNVALTKFVGLLFNKWvDCDLETAYELVQIANS-VTTKPLPIDEIDTTFRSILDKELR 282
Cdd:smart00942   1 FLGGVDEGNRNNTLFRLAGRLLRRG-YVDEEEAYALLLAANSaNCNPPLPERELEKTAESAYRRESR 66
PriCT_1 pfam08708
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 217-282 1.04e-05

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 430166  Cd Length: 64  Bit Score: 42.28  E-value: 1.04e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608039008 217 FNGFGDEGGRNVALTKFVGLLFNKWVDcdLETAYELVQIANSVTTKPLPIDEIDTTFRSILDKELR 282
Cdd:pfam08708   1 TLGPVASGGRNNALFRLAGALARRGID--RESVLALLHALNSNLEPPLDESEVEKTVKSVYRYVYA 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH