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Conserved domains on  [gi|1608695084|gb|QBX89233|]
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cytochrome b, partial (mitochondrion) [Scotophilus sp. clade 7 TD-2019]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 660.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00100   56 TSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPW 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00100  136 GQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDS 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00100  216 DKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALL 295

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFMPLTSLLENY 320
Cdd:MTH00100  296 LSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENN 375


                  ....
gi 1608695084 321 LLKW 324
Cdd:MTH00100  376 LLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 660.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00100   56 TSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPW 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00100  136 GQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDS 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00100  216 DKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALL 295

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFMPLTSLLENY 320
Cdd:MTH00100  296 LSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENN 375


                  ....
gi 1608695084 321 LLKW 324
Cdd:MTH00100  376 LLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-318 4.52e-111

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 327.90  E-value: 4.52e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   7 AFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMY-KE-TWNIGVILLFAIMATAFMGYVLPWGQMS 84
Cdd:COG1290    71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGYSLPWDQLS 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  85 FWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFH-FLLPFIITALVMIHLLFLHETGSNNPTGI----PSD 159
Cdd:COG1290   151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEK 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 160 MDMIPFHPYHTIKDILGLLIMIMILLALVLFTPDllGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVL 237
Cdd:COG1290   231 VDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVI 308

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 238 ALVMSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVehPYIIIGQVASVLYFLIIIVFMPLTSLL 317
Cdd:COG1290   309 AMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFI 386


                  .
gi 1608695084 318 E 318
Cdd:COG1290   387 E 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-151 3.58e-72

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 221.86  E-value: 3.58e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYM--YKETWNIGVILLFAIMATAFMGYVL 78
Cdd:cd00284    48 TPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVL 127

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608695084  79 PWGQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSN 151
Cdd:cd00284   128 PWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-149 3.38e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 208.78  E-value: 3.38e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYG--SYMYKETWNIGVILLFAIMATAFMGYVL 78
Cdd:pfam00033  39 TPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVL 118

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608695084  79 PWGQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETG 149
Cdd:pfam00033 119 PWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 181-284 4.56e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 51.72  E-value: 4.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 181 IMILLALVLFTPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLLIIPLLHTSNQRSM 260
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 1608695084 261 MF-RPISQCLFwlLVANLLTLtWIG 284
Cdd:TIGR01156 123 PFrRPVATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 660.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00100   56 TSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPW 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00100  136 GQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDS 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00100  216 DKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALL 295

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFMPLTSLLENY 320
Cdd:MTH00100  296 LSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENN 375


                  ....
gi 1608695084 321 LLKW 324
Cdd:MTH00100  376 LLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 597.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00119   57 TADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPW 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00119  137 GQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNT 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00119  217 DKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALA 296

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFMPLTSLLENY 320
Cdd:MTH00119  297 ASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENK 376


                  ....
gi 1608695084 321 LLKW 324
Cdd:MTH00119  377 MLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 578.91  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00131   56 TSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPW 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00131  136 GQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDA 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00131  216 DKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALL 295

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFMPLTSLLENY 320
Cdd:MTH00131  296 FSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENK 375


                  ....
gi 1608695084 321 LLKW 324
Cdd:MTH00131  376 ALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-324 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 572.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00074   57 TADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPW 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00074  137 GQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNP 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00074  217 DKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALL 296

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFMPLTSLLENY 320
Cdd:MTH00074  297 ASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENK 376


                  ....
gi 1608695084 321 LLKW 324
Cdd:MTH00074  377 LLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 543.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00191   53 TADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPW 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00191  133 GQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDS 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00191  213 DKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALV 292

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFMPL 313
Cdd:MTH00191  293 MSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-311 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 532.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00156   46 TADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPW 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00156  126 GQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNI 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00156  206 DKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALV 285

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFM 311
Cdd:MTH00156  286 MSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-322 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 514.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00034   56 TADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPW 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00034  136 GQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNY 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00034  216 DKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALV 295

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFMPLTSLLENY 320
Cdd:MTH00034  296 AAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENK 375


                  ..
gi 1608695084 321 LL 322
Cdd:MTH00034  376 LI 377
CYTB MTH00145
cytochrome b; Provisional
 1-322 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 504.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00145   57 TAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPW 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00145  137 GQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDG 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00145  217 DKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALV 296

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVfMPLTSLLENY 320
Cdd:MTH00145  297 MSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI-LPLVQKLWDN 375


                  ..
gi 1608695084 321 LL 322
Cdd:MTH00145  376 IL 377
CYTB MTH00016
cytochrome b; Validated
 1-323 1.22e-172

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 483.80  E-value: 1.22e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00016   57 TPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPW 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00016  137 GQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNS 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00016  217 DKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMF 296

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 241 MSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFlIIIVFMPLTSLLENY 320
Cdd:MTH00016  297 ASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYF-FYFMINPLLMKLWDK 375


                  ...
gi 1608695084 321 LLK 323
Cdd:MTH00016  376 LLK 378
CYTB MTH00022
cytochrome b; Validated
 2-323 3.81e-155

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 439.52  E-value: 3.81e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   2 SDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPWG 81
Cdd:MTH00022   56 SDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWG 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  82 QMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDMD 161
Cdd:MTH00022  136 QMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVD 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 162 MIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVM 241
Cdd:MTH00022  216 KVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFF 295

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 242 SILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFMPLTSLLENYL 321
Cdd:MTH00022  296 SILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQL 375


                  ..
gi 1608695084 322 LK 323
Cdd:MTH00022  376 LF 377
CYTB MTH00053
cytochrome b; Provisional
 2-323 6.62e-154

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 436.44  E-value: 6.62e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   2 SDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPWG 81
Cdd:MTH00053   58 ADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWG 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  82 QMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDMD 161
Cdd:MTH00053  138 QMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDID 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 162 MIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVM 241
Cdd:MTH00053  218 KIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVF 297

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 242 SILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFMPLTSLLENYL 321
Cdd:MTH00053  298 SILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKL 377


                  ..
gi 1608695084 322 LK 323
Cdd:MTH00053  378 LK 379
CYTB MTH00224
cytochrome b; Provisional
 7-323 1.73e-147

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 420.10  E-value: 1.73e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   7 AFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPWGQMSFW 86
Cdd:MTH00224   63 AFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFW 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  87 GATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDMDMIPFH 166
Cdd:MTH00224  143 GATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFH 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 167 PYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVL 246
Cdd:MTH00224  223 PYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILIL 302

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608695084 247 LIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVfMPLTSLLENYLLK 323
Cdd:MTH00224  303 FILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII-SPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 2-324 1.46e-115

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 339.22  E-value: 1.46e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   2 SDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPWG 81
Cdd:MTH00033   54 SDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWG 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  82 QMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDMD 161
Cdd:MTH00033  134 QMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSD 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 162 MIPFHPYHTIKDILGLLIM--IMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 239
Cdd:MTH00033  214 RTAFHVYFTIKDILGFLILfgVFVIIGIEPRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLAL 293

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 240 VMSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPV-EHPYIIIGQVASVLYFLIIIVFMPLTSLLE 318
Cdd:MTH00033  294 FASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLS 373


                  ....*.
gi 1608695084 319 NYLLKW 324
Cdd:MTH00033  374 NLFYEY 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-318 4.52e-111

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 327.90  E-value: 4.52e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   7 AFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMY-KE-TWNIGVILLFAIMATAFMGYVLPWGQMS 84
Cdd:COG1290    71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGYSLPWDQLS 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  85 FWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFH-FLLPFIITALVMIHLLFLHETGSNNPTGI----PSD 159
Cdd:COG1290   151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEK 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 160 MDMIPFHPYHTIKDILGLLIMIMILLALVLFTPDllGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVL 237
Cdd:COG1290   231 VDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVI 308

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 238 ALVMSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVehPYIIIGQVASVLYFLIIIVFMPLTSLL 317
Cdd:COG1290   309 AMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFI 386


                  .
gi 1608695084 318 E 318
Cdd:COG1290   387 E 387
CYTB MTH00086
cytochrome b; Provisional
 1-311 1.50e-105

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 312.64  E-value: 1.50e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPW 80
Cdd:MTH00086   45 TADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVW 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM 160
Cdd:MTH00086  125 AQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDY 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGlLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:MTH00086  205 DKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALL 283

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608695084 241 MSILVLLIIPLLhtsNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVFM 311
Cdd:MTH00086  284 MSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 2-310 6.84e-85

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 259.92  E-value: 6.84e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   2 SDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLFAIMATAFMGYVLPWG 81
Cdd:MTH00046   48 ADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWH 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  82 QMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSNNPTGIPSDM- 160
Cdd:MTH00046  128 QMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYs 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 161 DMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvLALV 240
Cdd:MTH00046  208 DVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLV 286

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 241 MSILVLLIIpllhTSNQRSMMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVASVLYFLIIIVF 310
Cdd:MTH00046  287 LSFLFFLWV----PTFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFIF 352
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-151 3.58e-72

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 221.86  E-value: 3.58e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYM--YKETWNIGVILLFAIMATAFMGYVL 78
Cdd:cd00284    48 TPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVL 127

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1608695084  79 PWGQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETGSN 151
Cdd:cd00284   128 PWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-149 3.38e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 208.78  E-value: 3.38e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   1 TSDTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYG--SYMYKETWNIGVILLFAIMATAFMGYVL 78
Cdd:pfam00033  39 TPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVL 118

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608695084  79 PWGQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIITALVMIHLLFLHETG 149
Cdd:pfam00033 119 PWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 152-299 1.41e-50

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 164.74  E-value: 1.41e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 152 NPTGIPSDMDMIPFHPYHTIKDILGLLIMIMILLALVLFTPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPN 231
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608695084 232 KLGGVLALVMSILVLLIIPLLHTSNQRSmMFRPISQCLFWLLVANLLTLTWIGGQPVEHPYIIIGQVA 299
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
33-198 1.93e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 154.71  E-value: 1.93e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  33 SMFFICLYLHIGRGLYYGSYMYKE--TWNIGVILLFAIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTNLVEWIW 110
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 111 GGFSVDKATLTRFFAFHF-LLPFIITALVMIHLLFLHETGSNNPTGIPSDMDMIPFHPYHTIKDILGLLIMIMILLALVL 189
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1608695084 190 FTPDLLGDP 198
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
203-303 1.18e-41

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 139.92  E-value: 1.18e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 203 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLLIIPLLHTSNQRSMMFRPISQCLFWLLVANLLTLTW 282
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1608695084 283 IGGQPVEHPYIIIGQVASVLY 303
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 3-153 1.58e-29

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 112.50  E-value: 1.58e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   3 DTMTAFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKE--TWNIGVILLFAIMATAFMGYVLPW 80
Cdd:PRK03735   69 DIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPW 148

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608695084  81 GQMSFWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFH-FLLPFIITALVMIHLLFLHETGSNNP 153
Cdd:PRK03735  149 DQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 7-153 8.09e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 104.80  E-value: 8.09e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084   7 AFNSVAHICRDVNYGWVLRYLHANGASMFFICLYLHIGRGLYYGSYMYKE--TWNIGVILLFAIMATAFMGYVLPWGQMS 84
Cdd:CHL00070   65 AFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIG 144

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084  85 FWGATVITNLLSAIPYVGTNLVEWIWGGFSVDKATLTRFFAFH-FLLPFIITALVMIHLLFLHETGSNNP 153
Cdd:CHL00070  145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 174-284 1.26e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 1.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 174 ILGLLIM--IMILLALVLFTPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLLIIPL 251
Cdd:COG5679    40 IFPVVILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1608695084 252 LHTSNQRSMMF-RPISQCLFwlLVANLLTLtWIG 284
Cdd:COG5679   115 IENVNKFQNPFrRPVATAVF--LFGTLVTL-WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 174-240 1.06e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 53.47  E-value: 1.06e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608695084 174 ILGlliMIMILLALVLFTPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALV 240
Cdd:CHL00058   44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMA 102
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 181-284 4.56e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 51.72  E-value: 4.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608695084 181 IMILLALVLFTPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLLIIPLLHTSNQRSM 260
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 1608695084 261 MF-RPISQCLFwlLVANLLTLtWIG 284
Cdd:TIGR01156 123 PFrRPVATTVF--LFGTVVAL-WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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