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Conserved domains on  [gi|1625642565|gb|QCF61658|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Zosterops consobrinorum]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.29e-163

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 460.44  E-value: 1.29e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   1 MTPQAKLIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPTLLTCMAVL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1625642565 321 TSTTIAILMVLSTMLLPISPMITTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.29e-163

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 460.44  E-value: 1.29e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   1 MTPQAKLIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPTLLTCMAVL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1625642565 321 TSTTIAILMVLSTMLLPISPMITTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-276 6.95e-35

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 132.55  E-value: 6.95e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  14 LLGTTITISSNHWIMAWAGLEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  90 ---THPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALL-------FMTSSSLNPT 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveaFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 153 LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTL--LNFYL--YTLMTTAVFLTLNTIKTP--- 225
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRKgge 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1625642565 226 --NLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:COG1007   351 aeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-281 6.20e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.18  E-value: 6.20e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  23 SNHWIMAWAGLEINTLAILPMI-SKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  91 HPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STVMKLPPIAL-----LFMTSSSLNPTLLTCMAVLSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 165 GGWMGLNQTQIRKILAFSSISHLGWMAIILA----YNPKLTLLNFYLYTLMTTAVFL-----TLNTIKTPNLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1625642565 236 KIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATA 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-276 1.35e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 109.65  E-value: 1.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  14 LLGTTITISSNHWIMAWAGLEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  93 TSSLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALL-------FMTSSSLNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 154 LTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLN--FYL--YTLMTTAVFLTLNTIKTPN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1625642565 227 ---LSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLY 404
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.29e-163

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 460.44  E-value: 1.29e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   1 MTPQAKLIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPTLLTCMAVL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1625642565 321 TSTTIAILMVLSTMLLPISPMITTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.79e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 388.78  E-value: 2.79e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   1 MTPQAKLIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSlNPTLLTCMAVL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1625642565 321 TSTT-IAILMVLSTMLLPISPMITTII 346
Cdd:MTH00135  320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 2.87e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 386.20  E-value: 2.87e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   1 MTPQAKLIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPTLLTCMAVL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 1625642565 321 TSTTIAILMVLSTMLLPISPMITTII 346
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 7.00e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 349.53  E-value: 7.00e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   1 MTPQAKLIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPTLLTCMAVL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPhTTNHMK-RWHINK 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319

                         330       340
                  ....*....|....*....|....*..
gi 1625642565 320 PTSTT-IAILMVLSTMLLPISPMITTI 345
Cdd:MTH00105  320 TKPMTlLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.14e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 293.03  E-value: 1.14e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   1 MTPQAKLIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPTLLTCMAVL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1625642565 321 TSTTIAILMVLSTMLLPISPMITTII 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 7-336 1.28e-83

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 257.17  E-value: 1.28e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   7 LIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  87 TQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPTLLTCMAVLSTALGG 166
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 167 WMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSLNAMLFL 246
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKPTSTTIA 326
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326

                         330
                  ....*....|
gi 1625642565 327 ILMVLSTMLL 336
Cdd:MTH00041  327 ILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 1.61e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 194.66  E-value: 1.61e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   1 MTPQAKLIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  81 tgqwdITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPialLFMTSSSLNPTLLTCMAVL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKrwHINKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK--KKKNK 310

                         330       340
                  ....*....|....*....|....*
gi 1625642565 321 TSTTIAILMVLSTMLLPISPMITTI 345
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-276 7.36e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 171.99  E-value: 7.36e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   5 AKLIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  85 DitqlthptSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPTLLTC-MAVLSTA 163
Cdd:MTH00144   85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCvISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLmtTWTKIPSLNAM 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGL 234

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1625642565 244 LFLT-LLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:MTH00144  235 SIISlLLSLGGLPPFLGFCSKLLVLISSMESSPL 268
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-276 2.83e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 162.64  E-value: 2.83e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   7 LIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  87 TQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPTLLTCMAVLSTALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 167 WMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSLNAMLFL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270
                  ....*....|....*....|....*....|
gi 1625642565 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMI 272
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 1.03e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 142.50  E-value: 1.03e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   8 IFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  88 qLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSslNPTLLTCMAVLSTALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 168 MGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTlMTTWTKIPSLNAMLF-L 246
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLgL 231

                         250       260
                  ....*....|....*....|....
gi 1625642565 247 TLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:MTH00197  232 SFLSLGGLPPLSGFFLKWLILTSL 255
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-276 6.95e-35

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 132.55  E-value: 6.95e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  14 LLGTTITISSNHWIMAWAGLEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  90 ---THPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALL-------FMTSSSLNPT 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveaFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 153 LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTL--LNFYL--YTLMTTAVFLTLNTIKTP--- 225
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRKgge 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1625642565 226 --NLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:COG1007   351 aeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 3.98e-31

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 120.52  E-value: 3.98e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  13 LLLGTTITISSNHWIMAWAGLEINTLAILPMI-SKSHHPRSVEAATKYFLTQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  79 WHTGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFmtSSSLNPTLLTCMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 159 VLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNP----KLTLLNFYLYTLMTTAVF---LTLNTIKTPnLSTLM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1625642565 232 TTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-279 5.02e-29

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 116.46  E-value: 5.02e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  14 LLGTTITISSNHWIMAWAGLEINTLA--ILPMISKsHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH 91
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPlyALAALRR-DRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAK 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  92 PTSS------------LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALL-------FMTSSSLNPT 152
Cdd:PRK05777  192 ALADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvaFGGLSEDWQQ 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 153 LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTL--LNFYL--YTLMTTAVFLTLNTIKTPNL- 227
Cdd:PRK05777  272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRRKGGe 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1625642565 228 STLMTTWTKI----PSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAA 279
Cdd:PRK05777  352 AESISDFAGLskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-281 6.20e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.18  E-value: 6.20e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  23 SNHWIMAWAGLEINTLAILPMI-SKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  91 HPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STVMKLPPIAL-----LFMTSSSLNPTLLTCMAVLSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 165 GGWMGLNQTQIRKILAFSSISHLGWMAIILA----YNPKLTLLNFYLYTLMTTAVFL-----TLNTIKTPNLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1625642565 236 KIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATA 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 1.19e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 112.42  E-value: 1.19e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  13 LLLGTTITISSNHWIMAWAGLEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI----T 87
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  88 QLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNpTLLTCmAVLSTALGGW 167
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN-VVLIC-AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 168 MGLNQTQIRKILAFSSISHLGWMAIILAYNP----KLTLLNFYLYTLMTTAVFLTLNTIK--TPNLSTLMTTWTKIPSLN 241
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKltKGLIVEVSGLSRKNPVIA 343

                         250       260
                  ....*....|....*....|....*.
gi 1625642565 242 AMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-276 1.35e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 109.65  E-value: 1.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  14 LLGTTITISSNHWIMAWAGLEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  93 TSSLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALL-------FMTSSSLNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 154 LTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLN--FYL--YTLMTTAVFLTLNTIKTPN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1625642565 227 ---LSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLY 404
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 2.54e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 94.06  E-value: 2.54e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  13 LLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  93 TSSL----------ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVM-KLPPIALL--------FMTSSSLNPTL 153
Cdd:COG0651   196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVYAILrvltllfgADPALFLGTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 154 LTcMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLY----TLMTTAVFLT----LNTIKTP 225
Cdd:COG0651   276 LV-LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTR 354

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1625642565 226 NLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:COG0651   355 DLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-263 4.40e-19

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 87.75  E-value: 4.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   1 MTPQAKLIFTASLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHP-RSVEAATKYFLTQAAASALVL--FSSM-- 75
Cdd:CHL00049  108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLyg 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  76 TNAWHTGQWDI------TQLTHPTSSLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIAL---- 141
Cdd:CHL00049  188 LSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatri 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 142 ---LFMTSSSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAI-ILAYNPK------LTLLNFYLYTLM 211
Cdd:CHL00049  268 fdiPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIFMNL 347

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1625642565 212 TTAVFLTLNTIKT--PNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049  348 GTFACIVLFGLRTgtDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-267 2.69e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 86.07  E-value: 2.69e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  15 LGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSV---------EAATKYFLTQAAASALVLFSSMTNAWHTGQ-- 83
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  84 --WDITQLTHPTSS----------LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLppIALLFMTSSSLNP 151
Cdd:MTH00198  279 mlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 152 TLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLM----TTAVFLTLNTIK---- 223
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsALASFTVICTLEefgt 436

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1625642565 224 -----------------TPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198  437 rtptsrqrdgsfgnynlVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.04e-17

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 83.95  E-value: 1.04e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  50 PRSVEAATKYFLTQAAASALVLF-SSMTNAWHTGQwdiTQLTHPTSSLI-------------LTSAIAMKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 116 PEVLQGSPLTTGLLLSTVMKLPPIAL-------LFMTSSSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAGFALairllvtAFPSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 189 WMAIILAYNPK--LTLLNFYL--YTLMTTAVF--LTLNTIKT--PNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGF 260
Cdd:PRK02504  314 FVMIGLVAGTEagYASMVFYLlaYLFMNLGAFacVILFSLRTgtDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393


                  ...
gi 1625642565 261 LPK 263
Cdd:PRK02504  394 FGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-282 6.03e-14

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 72.42  E-value: 6.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  38 LAILPM---ISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQW--DITQLTHPTSSLILTSAI--------AM 104
Cdd:COG1008   142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQLLLflaffiafAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 105 KLGLVPFHFWFPEVLQGSPLTTGLLLSTVM-KLPPIALL-FM------TSSSLNPTLLTcMAVLSTALGGWMGLNQTQIR 176
Cdd:COG1008   222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLlKMGGYGLLrFAlplfpeASAYFAPLLAA-LGVIGIIYGALVALAQTDLK 300

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 177 KILAFSSISHLGWMAI-ILAYNPK------LTLLNFylyTLMTTAVFLTLNTI----KTPNLSTLMTTWTKIPSLNAMLF 245
Cdd:COG1008   301 RLIAYSSVSHMGFVLLgIFALNPLglqgavLQMVSH---GLITAALFLLVGVLydrtHTRDIADLGGLAKRMPVLAALFL 377

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1625642565 246 LTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:COG1008   378 LAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAA 414
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-282 1.33e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 65.40  E-value: 1.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  34 EINTLAILPMISKSHHpRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDIT-------QLTHPTSSLI----LTSAI 102
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 103 AMKLGLVPFHFWFPEVLQGSPLTTGLLLS------------TVMKLPPIALLFMT-----SSSLNPTLLTCMAVLSTALG 165
Cdd:PRK08668  207 VAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygflLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISIIVG 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 166 GWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLT----LLNFYLYTLMTTAVFLTLNTI----KTPNLSTLMTTWTKI 237
Cdd:PRK08668  287 TLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEKM 366

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1625642565 238 PSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:PRK08668  367 PFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 3.97e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 63.96  E-value: 3.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  33 LEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLFS---------SMTNAWHTGQWDITQLTHPTSSL-ILTSA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 102 IAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTVMKLPPIALLFMT--SSSLNPT----LLTCMAVLSTALGGWMGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 174 QIRKILAFSSISHLGWMAI-----ILAY-NPKLT----------LLNFYLYTLMTTAVFLT----LNTIKTPNLSTLMTT 233
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1625642565 234 WTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 2.62e-10

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 61.49  E-value: 2.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  50 PRSVEAATKYFLTQAAASALVLFSSMTNAW-HTGQWDITQL-THPTSS-------LILTSAIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 121 GSPLTTGLLLSTVM-KLPPIAL------LFMTSSSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAII 193
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 194 LAYNPKLTLLNFYLYT----LMTTAVFLTLNTI----KTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWL 265
Cdd:TIGR01972 312 IFSFNELGISGAVFQMishgLITAALFLLVGVLyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391


                  ...
gi 1625642565 266 IIQ 268
Cdd:TIGR01972 392 ILL 394
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-282 6.43e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 60.28  E-value: 6.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  97 ILTSAIAMKLGLVPFHFWFPEVLQG-SPLTTGLLLSTVMKLPPIALL----------FMTSSSLNpTLLTCMAVLSTALG 165
Cdd:PRK08375  207 FVLLALALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIriyftvfggdFRFALGLG-WLLAVLALLSMLVG 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 166 GWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLN--FYL--YTLMTTAVFLTLNTI----KTPNLSTLMTTWTKI 237
Cdd:PRK08375  286 SLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRM 365

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1625642565 238 PSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:PRK08375  366 PLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-279 6.52e-10

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 59.94  E-value: 6.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   8 IFTASLLLgttiTISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSS----------MTN 77
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  78 AWHTGQW-DITQLTHPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTVmkLPPIALL------F 143
Cdd:PRK06458  192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGV--LLNVALYavlryyI 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 144 MTSSSLNP----TLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTLM----TTAV 215
Cdd:PRK06458  270 LIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltKSAI 349

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1625642565 216 FLT----LNTIKTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAA 279
Cdd:PRK06458  350 FFAsgnvLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIA 417
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-270 7.72e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 57.08  E-value: 7.72e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  48 HHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----THPTSSLILTSAIAM------KLGLVPFHFWFP 116
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 117 EVLQG----SPL-------TTGLLLstVMKLPPIallFmtssSLNPTLLTCMAV--LSTAL-GGWMGLNQTQIRKILAFS 182
Cdd:COG1009   236 DAMEGptpvSALlhaatmvKAGVYL--LARLSPL---F----ALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYS 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 183 SISHLGWMAIILAynpkLTLLNFYLYTLMTTAVF------------LTLNTIKTPNLSTLmttWTKIPSLNAMLFLTLLS 250
Cdd:COG1009   307 TVSQLGYMFLALG----VGAYVAALFHLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKKMPITAITFLIGALS 379

                         250       260
                  ....*....|....*....|
gi 1625642565 251 LAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1009   380 LAGIPPFAGFFSKEAILEAA 399
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 1.03e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 56.86  E-value: 1.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALL------FMTSSSLNPTLLTcMAVLSTALGGWMG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 170 LNQTQIRKILAFSSISHLGWMAIILAYNPK------LTLLnfYLYTLMTTAVFLTLNTIK----TPNLSTLMTTWTKIPS 239
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIDhstgTRDIRKLSGLGRRQPV 363

                         170       180
                  ....*....|....*....|....
gi 1625642565 240 LNAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  364 LAVVAALAAASMAGLPPLLGFVAK 387
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 1.09e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 56.50  E-value: 1.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  92 PTSSLILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTVMKLPPI-------ALLFMTSSSLNPTLLTCMAVLSTAL 164
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 165 GGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLN--FYLYTLMT--TAVFLTLNTIK----TPNLSTLMTTWTK 236
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVrltgYRSLQYLGGLYRK 365

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1625642565 237 IPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 1.56e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 55.90  E-value: 1.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  96 LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIAL------------LFMTSSSLNpTLLTCMAVLSTA 163
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLY----TLMTTAVFLTLNTIK----TPNLSTLMTTWT 235
Cdd:PRK12662  292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1625642565 236 KIPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 2.73e-08

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 55.04  E-value: 2.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  34 EINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQ-----LTHPTSSLILTSAIAMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 109 V------PFHFWFPEVLQGSPLTTGLLLSTVMKLPPIAL------LFMTSSSLNP--TLLTCMAVLSTALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifkLFGGLSYFPSaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 175 IRKILAFSSISHLGWMAIILAYNPKLTL-------LNFYLYTlmtTAVFLTLNTI----KTPNLSTLMTTWTKIPSLNAM 243
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYK---SALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFM 366

                         250       260
                  ....*....|....*....|....*
gi 1625642565 244 LFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 3.20e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 51.84  E-value: 3.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 109 VPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLfmtsSSLNP---------TLLTCMAVLSTALGGWMGLNQTQIRKIL 179
Cdd:PRK12647  212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLL----ARLNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLIL 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 180 AFSSISHLGWMAIILAYNPKLTLLNFYLY----TLMTTAVFLTLNTIK----TPNLSTLMTTWTKIPSLNAMLFLTLLSL 251
Cdd:PRK12647  288 AYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALSM 367

                         170
                  ....*....|....*
gi 1625642565 252 AGLPPLTGFLPKWLI 266
Cdd:PRK12647  368 AGLPPLFGFLAKELI 382
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 6.49e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 50.87  E-value: 6.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWD------ITQLTHPTSSLILTSAI----AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 124 LTTGLLLSTVMKLPPIAL------LFMTSSSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYN 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 198 PKLTLLN---------------FYLYTLMTTAVfltlNTIKTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLP 262
Cdd:PRK07363  318 TQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                  ....*.
gi 1625642565 263 KWLIIQ 268
Cdd:PRK07363  394 EFIVFQ 399
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 1.34e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 50.11  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSSLILT-----SAIAMKLGLVPFHFWFPEVLQGSPLTTGLL 129
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 130 LSTVM-KLPPIALLFMTSSSLNPTLLTCMAVL-----STALGGWMGLNQTQIRKILAFSSISHLG--WMAIILAYNPKLT 201
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIGiiLMGIGLYVIFGVY 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 202 LLNFYLYTLMTTAVFLTLN-----------------TIKTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667  323 GLDTLALLALGGALFHSLNhalfksllfltagsvvhATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402


                  ....*.
gi 1625642565 265 LIIQEL 270
Cdd:PRK08667  403 LLYESF 408
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 86-268 1.42e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 49.95  E-value: 1.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  86 ITQLTHPTSSLILTSAI------AMKLGLVPFHFWFPEVLQGSP---------LTTGLLLSTVMKLppIALLFMTSSSLN 150
Cdd:PRK07691  197 IAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLPGSYYAPPiaiaalfgaLLTKVGVYAIART--FTLFFSHDTSFT 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 151 PTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYT----LMTTAVFLTLNTI---- 222
Cdd:PRK07691  275 HYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLihdmIVKAALFLLIGIMikit 354

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1625642565 223 KTPNL---STLMTTWtkiPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07691  355 GTTDLkkmGGLIKRY---PVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK12650 PRK12650
DUF4040 family protein;
80-263 2.06e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 49.66  E-value: 2.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  80 HTGQW-DITQLTHPTSSLILTSAIAmKLGLVPFHFWFPEVLQG-SPLTTGLLLSTVMKLPPIALL-FMTSSSLNPT---L 153
Cdd:PRK12650  196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLrFSPVFHDVAVwnwL 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 154 LTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYT----LMTTAVFLTLNTIK----TP 225
Cdd:PRK12650  275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVVDhqagTR 354

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1625642565 226 NLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  355 DIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 3.47e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 48.43  E-value: 3.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  96 LILTSAIAMKLGLVPFHFWFPEVLQGSP-LTTGLLLSTVMKLPPIAL-----LFMTSSSLNpTLLTCMAVLSTALGGWMG 169
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPaPVTAVFAGLLTKVGVYAIirthtLLFPGGGLD-TLLMVVALLTMVVGILGA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 170 LNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYT----LMTTAVFLTLNTIK----TPNLSTLMTTWTKIPSLN 241
Cdd:PRK12665  292 IAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVGLIErqagSSSLRRLGGLAKASPLLA 371

                         170       180
                  ....*....|....*....|....*..
gi 1625642565 242 AMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665  372 VLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 4.79e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 48.02  E-value: 4.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  33 LEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH--PTSSLILTSAIAMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 111 FHFWFPEVLQGSPLTTGLLLS-TVMKLPPIALLFMTSSSLNPTL-LTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVRCALDVPGLDLiVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 189 WmaIILAynPKLTLLNFYLYTLMTTAVFLTLNTIKTPNL----STLMTTWTKIPslnamLFLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK07234  283 F--ILAA--PLVGGLYALAHGLVKSTLFLCAGALPSRNFteliSQMLGIGKWIP-----LTMASFSIAGFPLLAGFVSKV 353


                  ....*..
gi 1625642565 265 LIIQELT 271
Cdd:PRK07234  354 LTLKNLL 360
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-268 4.96e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 48.22  E-value: 4.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  82 GQWDITQLTHPTSSLILTSAI---AM-KLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALL-----FMTSSSLNPT 152
Cdd:MTH00207  165 GHWSITNMWQTDMNNYIALSImiaAMtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWFNP 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 153 LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYN-PKLTLLNFYLYTLMTTAVFLTLNTI-----KTPN 226
Cdd:MTH00207  245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFVCAGSLihshhHSQD 324

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1625642565 227 LSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207  325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 5.02e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 48.16  E-value: 5.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  55 AATKYFLTQAAASALVLFSSMTNAWHTG--QWDITQL---THPTSSLILTSA-----IAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 124 LTTGLLLSTVMKLPPIALL------FMTSSSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYN 197
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 198 PKLTLLNFYL----YTLMTTAVFLTLNTI--KTPN-----LSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473  318 TPLSILAAVFqmisHGLISALLFLLVGVVykKTGSrdvdvLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-210 7.88e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.44  E-value: 7.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  13 LLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  87 TQLTHPTS----SLILTSAIAM------KLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPT---- 152
Cdd:PRK08676  191 TELAAHASllspSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1625642565 153 ----LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTL 210
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 7.93e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 47.65  E-value: 7.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 105 KLGLvpfHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMT-----SSSLNPTLLTCMAVLSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfeKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 180 AFSSISHLGWMAIILAY--NPKLTLLNFYLYTLMTTAVFLTLN------TIKTPNLSTLMTTWTKIPSLNAMLFLTLLSL 251
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSI 397

                         170
                  ....*....|....*..
gi 1625642565 252 AGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  398 MGLPYLTGFYSKDLILE 414
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 9.21e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.12  E-value: 9.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  50 PRSVEAATKYFLTQAAASALVLFSSMTNAWH----TGQWDITQLTHPTSS--------LILTSAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 118 VLQGSPLTTGLLLSTVM-KLPPIALL------FMTSSSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILlKMGAYGLLrfslplFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFV 316


                  ..
gi 1625642565 191 AI 192
Cdd:PRK05846  317 TL 318
PRK12646 PRK12646
DUF4040 family protein;
110-277 1.06e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 47.44  E-value: 1.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 110 PFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPT-----LLTCMAVLSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK12646  228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 185 SHLGW-MAII-----LAYNPKLTLLNFY-------LYTLMTTAVF---------LTLNTIKTPNLSTLMTTWTKIPSLNA 242
Cdd:PRK12646  308 SQLGMiMAMVgigggYAQHQQDAIASIYvfvlfaaLFHLMNHAIFkcalfmgvgIIDHEAGTRDIRILSGMRQLFPKMNL 387

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1625642565 243 MLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIP 277
Cdd:PRK12646  388 VMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLS 422
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 15-270 1.23e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 47.09  E-value: 1.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  15 LGTTITISSNHWIMAWAGLEINTLA---ILPMISKSHHPRSVEAATKYFLTqaaasALVLFSSMTNAWHTGQWDITQLTH 91
Cdd:PRK06459   83 LGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFVFMAFGELST-----VLILAGFAWAFIISGTTNFSYLPS 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  92 PTSSLILTSAIAMKLGLVPFHF--WFPEVLQGSPLTTGLLLSTVMKLPPI-----ALLFMTSSSLNPTLLTCMAV--LST 162
Cdd:PRK06459  158 PVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVygilkMTILTQTIPIGYFGLTILAIgaFSI 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 163 ALGGWMGLNQTQIRKILAFSSISHLGWM-----AIILAYNPKLTLLNFYLYTLMT---------TAVFLTLNTIKTPNLS 228
Cdd:PRK06459  238 LFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILysfahsvakTGLFLSSGLQEKQSIT 317

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1625642565 229 TLMTTWTKIPSLNAmlFLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459  318 YSKKIRNRWIELGL--TLLASSLSGLLPNIGGVASWLLLESL 357
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 2.70e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.98  E-value: 2.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  48 HHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSS---------------LILTSAiAMKLGLVPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitliLIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 113 FWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTSSSLNPT-----LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 188 GWMAIILAYNPK------LTLLNFYLYTLMTTAVFLTL------NTIKTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLP 255
Cdd:PRK12649  315 AYLMTMYGYTTYhepglgVAAATFHLLNHATFKACLFLvagivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                  ....*...
gi 1625642565 256 PLTGFLPK 263
Cdd:PRK12649  395 PLNGFLSK 402
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 5.78e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 40.32  E-value: 5.78e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1625642565 295 RLAYCATITLPPHTTNHMKRWHINKPTSTT-IAILMVLSTMLLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-268 1.45e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.53  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 111 FHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTS-----SSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSIS 185
Cdd:MTH00020  229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSplfeqAPLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 186 HLGWMAIILAynpkltlLNFY---LYTLMTTAVFLTL----------------NTIKTPNLSTLmttwtkIPSLNAMLFL 246
Cdd:MTH00020  309 QLGYMVVACG-------LSHYsisLFHLMNHAFFKALlflsagsvihalsdeqDMRKMGGLISF------LPLTYIFFLI 375

                         170       180
                  ....*....|....*....|..
gi 1625642565 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020  376 GSLSLMGFPYLTGFYSKDLILE 397
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-267 1.62e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 43.37  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 101 AIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTV-MKLPPIALLFMT-------SSSLNPTLLTcMAVLSTALGGWMGLNQ 172
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSwpilplgAQNLAPAVIA-MGIVGIVYGSFATCRQ 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 173 TQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYTL---MTTAVFLTLNTIKTPNLSTLMTTWTK-----IPSLNAML 244
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLahgIVSSLLFILVTILYDRHHTRLIKYYRglsitMPIWGTIM 397

                         170       180
                  ....*....|....*....|...
gi 1625642565 245 FLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226  398 IVTSLANVAVPPSGNFIGEYLSI 420
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-272 2.16e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 42.89  E-value: 2.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 107 GLVPFHFWFPEVLQGSPLTTGLLLSTV-MKLPPIALLFMTSSSLNPTL-----LTCMAVLSTALGGWMGLNQTQIRKILA 180
Cdd:PRK08042  195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 181 FSSISHLGWMAI--------ILAYNPKLTLLNFY--LY-----TLMTTAVFLTLNTI----KTPNLSTLMTTWTKIPSLN 241
Cdd:PRK08042  275 YHTLENIGIILLglgagvtgIALEQPALIALGLVggLYhllnhSLFKSVLFLGAGSVwfrtGHRDIEKLGGIGKKMPVIS 354

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1625642565 242 AMLFLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK08042  355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-197 2.79e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.71  E-value: 2.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  55 AATKYFLTQAAASALVLFSSMTNAWHTGQ--WDITQLT--HPTSSLILTS------AIAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLLyagfliAFGVKLPIFPLHTWLPDahgeasa 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 118 ----VLQGSPLTTG---LLLSTVMKLPPIALLFmtssslnPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK12561  218 pvsmILAGVLLKMGgyaLIRFNVQMLPDAHVYF-------APALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290


                  ....*...
gi 1625642565 191 AI-ILAYN 197
Cdd:PRK12561  291 LLgIAAFT 298
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 68-267 2.20e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 39.93  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  68 ALVLFSSMTNAWHTGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALL----- 142
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLirlsp 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 143 FMTSSSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYN-PKLTLlnFYLYT--------LMTT 213
Cdd:MTH00211  260 LFQNNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNqPQLAF--LHICThaffkamlFMCS 337

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1625642565 214 AVFL-TLNTI----KTPNLSTLMttwtkiPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00211  338 GSIIhGLNNEqdirKMGGLSKNL------PFTSSCLFLGSLALMGFPFLSGFFSKDLIL 390
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 105-271 4.44e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 38.84  E-value: 4.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 105 KLGLvpfHFWFPEVLQGSPLTTGLLLSTVMKLPPIALLFMTS-----SSLNPTLLTCMAVLSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00210  227 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGplfegSPLALTIVTILGALTAFFAATVGVVQNDLKKVI 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 180 AFSSISHLGWMAIILAynpkltLLNFY--LYTLMTTAVFLTL------NTIKTPNLSTLMTTW----TKIPSLNAMLFLT 247
Cdd:MTH00210  304 AYSTCSQLGYMVMVCG------ISNYStsLFHLMNHAFFKALlflsagSVIHAVSDEQDMRKMggliKSIPFTYVMILIG 377

                         170       180
                  ....*....|....*....|....
gi 1625642565 248 LLSLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00210  378 SLSLMGFPYLTGFYSKDLIL-ELT 400
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 143-267 5.26e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 38.67  E-value: 5.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 143 FMTSSSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYN-PKLTLlnFYLYT------LMTTAV 215
Cdd:MTH00151  232 FLSSSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGmPSLAL--FHLYThalfkaLLFLCA 309

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1625642565 216 -FLTLNTIKTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00151  310 gSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLIL 362
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
54-263 8.35e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 38.08  E-value: 8.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  54 EAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSSLILTSAIAMKLGLV----------------PFHFWFPE 117
Cdd:PRK07376  173 DAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWLPD 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 118 VLQGSPLTTGLLLSTVMKLPP---IALLFMTSSSLnPTLLTCMAVLSTA---LGGWMGLNQTQIRKILAFSSISHLGWMA 191
Cdd:PRK07376  253 AMEGPTPISALIHAATMVAAGvflVARMYPVFEQF-PAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYMV 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 192 I---ILAYNPKltllnfyLYTLMTTAVF---LTLNTIKT-----------PNLST---LMTTWTKIPSLNAMLFLT-LLS 250
Cdd:PRK07376  332 MamgCGAYSAG-------LFHLMTHAYFkamLFLGSGSVihgmeevvghdPVLAQdmrLMGGLRKYMPITAITFLIgCLA 404

                         250
                  ....*....|...
gi 1625642565 251 LAGLPPLTGFLPK 263
Cdd:PRK07376  405 ISGIPPFAGFWSK 417
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-276 8.76e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 37.87  E-value: 8.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565   9 FTASLLLGTTITISSNHWIMaWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMT---NAWHTGQWD 85
Cdd:PRK06589  122 FNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFV 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  86 ITQLTHPTSSLILTSAIAMKLG---LVPFHFWFPEVLQGS-PLTTGLLLSTVMK---LPPIALLFMTSSSLNPTLLTCM- 157
Cdd:PRK06589  201 SGGLFSKNQSIILLLMFIYGIAktaIFPVHSWLPAAMVAHyPVSALLHAVIVVKtglFCIYKILLYIFGLSYLQRIFAEf 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565 158 ------AVLSTALGGWMGLNQTQIRKILAFSSISHLGWM----AIILAYNPKLTLLNFYLYTLMTTAVFLTLNTI----K 223
Cdd:PRK06589  281 nwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLAllsaFILTPKALGAAILHLVSHSFAKICLFYSMGSIyslkK 360

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1625642565 224 TPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:PRK06589  361 EDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQP 413
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 75-190 9.50e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 37.97  E-value: 9.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625642565  75 MTNAW---HTGQWDITQL-------THPTSSLILtsAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTVMKLPPIALL-- 142
Cdd:MTH00066  182 LSMAWlamNTNSWELQQIfllndnsTLPLLGLIL--AAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLir 259

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1625642565 143 FMTSSSLNPTLLT---CMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:MTH00066  260 FHPLLENNQTALTiclCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLM 310
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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