RNA polymerase II second largest subunit, partial [Penicillium cyaneum]
DNA-directed RNA polymerase subunit B family protein( domain architecture ID 1000145)
DNA-directed RNA polymerase subunit B family protein similar to fungal DNA-directed RNA polymerase II subunit RPB2
List of domain hits
Name | Accession | Description | Interval | E-value | |||||
Ricin_B_lectin super family | cl47023 | Ricin-type beta-trefoil lectin domain; |
3-290 | 2.22e-76 | |||||
Ricin-type beta-trefoil lectin domain; The actual alignment was detected with superfamily member PRK08565: Pssm-ID: 481363 [Multi-domain] Cd Length: 1103 Bit Score: 253.34 E-value: 2.22e-76
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Name | Accession | Description | Interval | E-value | |||||
PRK08565 | PRK08565 | DNA-directed RNA polymerase subunit B; Provisional |
3-290 | 2.22e-76 | |||||
DNA-directed RNA polymerase subunit B; Provisional Pssm-ID: 236291 [Multi-domain] Cd Length: 1103 Bit Score: 253.34 E-value: 2.22e-76
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RNA_pol_B_RPB2 | cd00653 | RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ... |
3-123 | 2.04e-45 | |||||
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation. Pssm-ID: 238353 [Multi-domain] Cd Length: 866 Bit Score: 165.05 E-value: 2.04e-45
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RNA_pol_Rpb2_4 | pfam04566 | RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ... |
157-218 | 1.71e-32 | |||||
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain. Pssm-ID: 428012 [Multi-domain] Cd Length: 62 Bit Score: 115.16 E-value: 1.71e-32
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RpoB | COG0085 | DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ... |
48-124 | 1.84e-17 | |||||
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase Pssm-ID: 439855 [Multi-domain] Cd Length: 1001 Bit Score: 83.24 E-value: 1.84e-17
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Name | Accession | Description | Interval | E-value | |||||
PRK08565 | PRK08565 | DNA-directed RNA polymerase subunit B; Provisional |
3-290 | 2.22e-76 | |||||
DNA-directed RNA polymerase subunit B; Provisional Pssm-ID: 236291 [Multi-domain] Cd Length: 1103 Bit Score: 253.34 E-value: 2.22e-76
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RNA_pol_B_RPB2 | cd00653 | RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ... |
3-123 | 2.04e-45 | |||||
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation. Pssm-ID: 238353 [Multi-domain] Cd Length: 866 Bit Score: 165.05 E-value: 2.04e-45
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PRK09606 | PRK09606 | DNA-directed RNA polymerase subunit B''; Validated |
2-135 | 2.05e-35 | |||||
DNA-directed RNA polymerase subunit B''; Validated Pssm-ID: 236587 [Multi-domain] Cd Length: 494 Bit Score: 133.92 E-value: 2.05e-35
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RNA_pol_Rpb2_4 | pfam04566 | RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ... |
157-218 | 1.71e-32 | |||||
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain. Pssm-ID: 428012 [Multi-domain] Cd Length: 62 Bit Score: 115.16 E-value: 1.71e-32
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RNA_pol_Rpb2_3 | pfam04565 | RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ... |
58-121 | 3.69e-32 | |||||
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site. Pssm-ID: 428011 [Multi-domain] Cd Length: 67 Bit Score: 114.16 E-value: 3.69e-32
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PRK07225 | PRK07225 | DNA-directed RNA polymerase subunit B'; Validated |
155-299 | 7.66e-28 | |||||
DNA-directed RNA polymerase subunit B'; Validated Pssm-ID: 235972 [Multi-domain] Cd Length: 605 Bit Score: 113.52 E-value: 7.66e-28
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RpoB | COG0085 | DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ... |
48-124 | 1.84e-17 | |||||
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase Pssm-ID: 439855 [Multi-domain] Cd Length: 1001 Bit Score: 83.24 E-value: 1.84e-17
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RNA_pol_Rpb2_5 | pfam04567 | RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ... |
261-297 | 5.21e-16 | |||||
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain. Pssm-ID: 428013 [Multi-domain] Cd Length: 53 Bit Score: 71.03 E-value: 5.21e-16
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PRK14844 | PRK14844 | DNA-directed RNA polymerase subunit beta/beta'; |
56-143 | 1.63e-07 | |||||
DNA-directed RNA polymerase subunit beta/beta'; Pssm-ID: 173305 [Multi-domain] Cd Length: 2836 Bit Score: 53.09 E-value: 1.63e-07
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PRK09603 | PRK09603 | DNA-directed RNA polymerase subunit beta/beta'; |
56-117 | 4.74e-06 | |||||
DNA-directed RNA polymerase subunit beta/beta'; Pssm-ID: 181983 [Multi-domain] Cd Length: 2890 Bit Score: 48.38 E-value: 4.74e-06
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rpoB | CHL00207 | RNA polymerase beta subunit; Provisional |
55-117 | 1.73e-05 | |||||
RNA polymerase beta subunit; Provisional Pssm-ID: 214397 [Multi-domain] Cd Length: 1077 Bit Score: 46.62 E-value: 1.73e-05
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rpoB | PRK00405 | DNA-directed RNA polymerase subunit beta; Reviewed |
89-117 | 9.47e-05 | |||||
DNA-directed RNA polymerase subunit beta; Reviewed Pssm-ID: 234749 [Multi-domain] Cd Length: 1112 Bit Score: 44.32 E-value: 9.47e-05
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rpoB | CHL00001 | RNA polymerase beta subunit |
57-117 | 4.46e-04 | |||||
RNA polymerase beta subunit Pssm-ID: 214330 [Multi-domain] Cd Length: 1070 Bit Score: 42.20 E-value: 4.46e-04
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Blast search parameters | ||||
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