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Conserved domains on  [gi|1710738099|gb|QDS03209|]
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RNA polymerase II subunit 2, partial [Sporidesmiella novae-zelandiae]

Protein Classification

DNA-directed RNA polymerase subunit B family protein( domain architecture ID 1000145)

DNA-directed RNA polymerase subunit B family protein similar to fungal DNA-directed RNA polymerase II subunit RPB2

CATH:  3.90.1110.10|3.90.1070.20
EC:  2.7.7.6
Gene Ontology:  GO:0003899|GO:0000428|GO:0008270|GO:0003677|GO:0006351
PubMed:  11839495
SCOP:  4003708

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Ricin_B_lectin super family cl47023
Ricin-type beta-trefoil lectin domain;
3-327 9.89e-72

Ricin-type beta-trefoil lectin domain;


The actual alignment was detected with superfamily member PRK08565:

Pssm-ID: 481363 [Multi-domain]  Cd Length: 1103  Bit Score: 240.24  E-value: 9.89e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099    3 LKRCIDQNKQFDIRVGMRHQSMTNGLKYSLATGNWGDQKkamstvAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKP 82
Cdd:PRK08565   361 LEKSYARGRKLDLRAIVRPDIITERIRHALATGNWVGGR------TGVSQLLDRTNYLSTLSHLRRVVSPLSRGQPHFEA 434

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099   83 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVDFMVARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQ 162
Cdd:PRK08565   435 RDLHGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEILYELGVVPVEEAREEEYISWSRVYLNGRLIGYHP 514

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099  163 DPKHLVRLVQGLRRKGIIQAEVSlVRDIRDREFK---IFSDAGRVMRPLFAVEqeenaesgaqQGALILTKEHIARLEQD 239
Cdd:PRK08565   515 DGEELAEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVVE----------NGKPKLTREHVEKLKKG 583

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099  240 EaideqhpdhFGWQGLQDVGAIEYLDAEEEETAMICMTPEDLenyrlqkagrpaqeevtdddlnrrlktklnptTHMYTH 319
Cdd:PRK08565   584 E---------LTFDDLVKMGVIEYLDAEEEENAYVALDPEDL--------------------------------TPEHTH 622


                   ....*...
gi 1710738099  320 CEIHPSML 327
Cdd:PRK08565   623 LEIWPPAI 630
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 3-327 9.89e-72

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 240.24  E-value: 9.89e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099    3 LKRCIDQNKQFDIRVGMRHQSMTNGLKYSLATGNWGDQKkamstvAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKP 82
Cdd:PRK08565   361 LEKSYARGRKLDLRAIVRPDIITERIRHALATGNWVGGR------TGVSQLLDRTNYLSTLSHLRRVVSPLSRGQPHFEA 434

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099   83 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVDFMVARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQ 162
Cdd:PRK08565   435 RDLHGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEILYELGVVPVEEAREEEYISWSRVYLNGRLIGYHP 514

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099  163 DPKHLVRLVQGLRRKGIIQAEVSlVRDIRDREFK---IFSDAGRVMRPLFAVEqeenaesgaqQGALILTKEHIARLEQD 239
Cdd:PRK08565   515 DGEELAEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVVE----------NGKPKLTREHVEKLKKG 583

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099  240 EaideqhpdhFGWQGLQDVGAIEYLDAEEEETAMICMTPEDLenyrlqkagrpaqeevtdddlnrrlktklnptTHMYTH 319
Cdd:PRK08565   584 E---------LTFDDLVKMGVIEYLDAEEEENAYVALDPEDL--------------------------------TPEHTH 622


                   ....*...
gi 1710738099  320 CEIHPSML 327
Cdd:PRK08565   623 LEIWPPAI 630
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 2-117 2.70e-43

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 158.89  E-value: 2.70e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099   2 YLKRCIDQNKQFDIRVGMRHQSMTNGLKYSLATGNWGDQKKAMSTvAGVSQVLNRYTFASTLSHLRRTNT-PIGRDGKLA 80
Cdd:cd00653   266 KLQKQLSKKKDLTPQLLINSKPITSGIKEFLATGNWGSKRFLMQR-SGLSQVLDRLNPLSELSHKRRISSlGLFRERKGF 344

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1710738099  81 KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVS 117
Cdd:cd00653   345 EVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS 381
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 52-115 4.32e-32

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 114.16  E-value: 4.32e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1710738099  52 QVLNRYTFASTLSHLRRTNTPIG---RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCY 115
Cdd:pfam04565   1 QVLDRTNYLSTLSHLRRVNSPRGglfREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 41-118 1.19e-16

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 80.92  E-value: 1.19e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099   41 KKAMSTVaGVSQVLNRYTFASTLSHLRRTNT----PIGRDgklaKP----RQLHNTHWGLVCPAETPEGQACGLVKNLSL 112
Cdd:COG0085    363 KEFFGSS-QLSQFMDQTNPLSELTHKRRLSAlgpgGLSRE----RAgfevRDVHPSHYGRMCPIETPEGPNIGLIGSLAL 437


                   ....*.
gi 1710738099  113 MCYVSV 118
Cdd:COG0085    438 YARVNE 443
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 3-327 9.89e-72

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 240.24  E-value: 9.89e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099    3 LKRCIDQNKQFDIRVGMRHQSMTNGLKYSLATGNWGDQKkamstvAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKP 82
Cdd:PRK08565   361 LEKSYARGRKLDLRAIVRPDIITERIRHALATGNWVGGR------TGVSQLLDRTNYLSTLSHLRRVVSPLSRGQPHFEA 434

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099   83 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVDFMVARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQ 162
Cdd:PRK08565   435 RDLHGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEILYELGVVPVEEAREEEYISWSRVYLNGRLIGYHP 514

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099  163 DPKHLVRLVQGLRRKGIIQAEVSlVRDIRDREFK---IFSDAGRVMRPLFAVEqeenaesgaqQGALILTKEHIARLEQD 239
Cdd:PRK08565   515 DGEELAEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVVE----------NGKPKLTREHVEKLKKG 583

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099  240 EaideqhpdhFGWQGLQDVGAIEYLDAEEEETAMICMTPEDLenyrlqkagrpaqeevtdddlnrrlktklnptTHMYTH 319
Cdd:PRK08565   584 E---------LTFDDLVKMGVIEYLDAEEEENAYVALDPEDL--------------------------------TPEHTH 622


                   ....*...
gi 1710738099  320 CEIHPSML 327
Cdd:PRK08565   623 LEIWPPAI 630
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 2-117 2.70e-43

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 158.89  E-value: 2.70e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099   2 YLKRCIDQNKQFDIRVGMRHQSMTNGLKYSLATGNWGDQKKAMSTvAGVSQVLNRYTFASTLSHLRRTNT-PIGRDGKLA 80
Cdd:cd00653   266 KLQKQLSKKKDLTPQLLINSKPITSGIKEFLATGNWGSKRFLMQR-SGLSQVLDRLNPLSELSHKRRISSlGLFRERKGF 344

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1710738099  81 KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVS 117
Cdd:cd00653   345 EVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS 381
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 52-115 4.32e-32

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 114.16  E-value: 4.32e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1710738099  52 QVLNRYTFASTLSHLRRTNTPIG---RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCY 115
Cdd:pfam04565   1 QVLDRTNYLSTLSHLRRVNSPRGglfREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
PRK09606 PRK09606
DNA-directed RNA polymerase subunit B''; Validated
 3-141 5.44e-31

DNA-directed RNA polymerase subunit B''; Validated


Pssm-ID: 236587 [Multi-domain]  Cd Length: 494  Bit Score: 121.60  E-value: 5.44e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099   3 LKRCIDQNKQFDIRVGMRHQSMTNGLKYSLATGNWGDQKkamstvAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKP 82
Cdd:PRK09606  364 LERANMRNRELSIKTAVRSDVLTERLEHAMATGNWVGGR------TGVSQLLDRTDYMATLSHLRRVVSPLSRSQPHFEA 437

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1710738099  83 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVDFMvaRNMEVLEEYE 141
Cdd:PRK09606  438 RDLHPTQWGRICPSETPEGPNCGLVKNFAQMVEISTGEDEEEVKEIL--KELGVEPERG 494
RNA_pol_Rpb2_4 pfam04566
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ...
 151-212 2.87e-30

RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.


Pssm-ID: 428012 [Multi-domain]  Cd Length: 62  Bit Score: 109.38  E-value: 2.87e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1710738099 151 VFVNGTWVGVHQDPKHLVRLVQGLRRKGIIQAEVSLVRDIRDREFKIFSDAGRVMRPLFAVE 212
Cdd:pfam04566   1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
PRK07225 PRK07225
DNA-directed RNA polymerase subunit B'; Validated
 149-281 4.63e-26

DNA-directed RNA polymerase subunit B'; Validated


Pssm-ID: 235972 [Multi-domain]  Cd Length: 605  Bit Score: 108.51  E-value: 4.63e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099 149 TKVFVNGTWVGVHQDPKHLVRLVQGLRRKGIIQAEVSLVRDIRDREFKIFSDAGRVMRPLFAVEqeenaesgaqQGALIL 228
Cdd:PRK07225    5 AKVYVNGKLIGTHDDPEELVEEIREARRSGEISEEVNVSYKEETNEVIINTDAGRARRPLIVVE----------NGEPLL 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1710738099 229 TKEHIARLEQDEaideqhpdhFGWQGLQDVGAIEYLDAEEEETAMICMTPEDL 281
Cdd:PRK07225   75 TEEHIEKLKNGE---------LTFDDLVKQGVIEYLDAEEEENAYIAVYEEDL 118
RNA_pol_Rpb2_5 pfam04567
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ...
 252-324 2.75e-23

RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.


Pssm-ID: 428013 [Multi-domain]  Cd Length: 53  Bit Score: 90.68  E-value: 2.75e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1710738099 252 WQGLQDVGAIEYLDAEEEETAMICMTPEDLENY-RLQKAGrpaqeevtdddlnrrlktklnPTTHMYTHCEIHP 324
Cdd:pfam04567   1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESsREEREG---------------------PYAHTYTHCEIHP 53
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 41-118 1.19e-16

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 80.92  E-value: 1.19e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099   41 KKAMSTVaGVSQVLNRYTFASTLSHLRRTNT----PIGRDgklaKP----RQLHNTHWGLVCPAETPEGQACGLVKNLSL 112
Cdd:COG0085    363 KEFFGSS-QLSQFMDQTNPLSELTHKRRLSAlgpgGLSRE----RAgfevRDVHPSHYGRMCPIETPEGPNIGLIGSLAL 437


                   ....*.
gi 1710738099  113 MCYVSV 118
Cdd:COG0085    438 YARVNE 443
PRK14844 PRK14844
DNA-directed RNA polymerase subunit beta/beta';
50-137 1.26e-07

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 173305 [Multi-domain]  Cd Length: 2836  Bit Score: 53.47  E-value: 1.26e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099   50 VSQVLNRYTFASTLSHLRRTNT--PIG--RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVS----VGTP 121
Cdd:PRK14844   532 LSQFMDQTNPLSEITHKRRLSAlgPGGltRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARINkygfIESP 611

                           90
                   ....*....|....*.
gi 1710738099  122 AEPIVDFMVARNMEVL 137
Cdd:PRK14844   612 YRKVVNRVVTDQIEYL 627
PRK09603 PRK09603
DNA-directed RNA polymerase subunit beta/beta';
50-159 4.25e-07

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 181983 [Multi-domain]  Cd Length: 2890  Bit Score: 51.85  E-value: 4.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710738099   50 VSQVLNRYTFASTLSHLRRTNTpIGrDGKLAK------PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVS----VG 119
Cdd:PRK09603   525 LSQFMDQTNPLSEVTHKRRLSA-LG-EGGLVKdrvgfeARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNdlgfIE 602

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1710738099  120 TPAEPIVDFMVARNMEVL---EEYEPLRYPNATKVFVNGTWVG 159
Cdd:PRK09603   603 APYKKVVDGKVVGETIYLtaiQEDSHIIAPASTPIDEEGNILG 645
rpoB CHL00207
RNA polymerase beta subunit; Provisional
 50-111 1.86e-05

RNA polymerase beta subunit; Provisional


Pssm-ID: 214397 [Multi-domain]  Cd Length: 1077  Bit Score: 46.24  E-value: 1.86e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1710738099   50 VSQVLNRYTFASTLSHLRRTNT--PIGRDgKLAKP---RQLHNTHWGLVCPAETPEGQACGLVKNLS 111
Cdd:CHL00207   366 LSQYMDQTNPLSELTHKRRISIlgPGGLD-KDRISfavRDIHPSHYGRICPIETPEGPNCGLIGSLA 431
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
 83-111 9.89e-05

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 43.94  E-value: 9.89e-05
                           10        20
                   ....*....|....*....|....*....
gi 1710738099   83 RQLHNTHWGLVCPAETPEGQACGLVKNLS 111
Cdd:PRK00405   469 RDVHPTHYGRICPIETPEGPNIGLINSLA 497
rpoB CHL00001
RNA polymerase beta subunit
 51-119 1.72e-03

RNA polymerase beta subunit


Pssm-ID: 214330 [Multi-domain]  Cd Length: 1070  Bit Score: 40.27  E-value: 1.72e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1710738099   51 SQVLNRYTFASTLSHLRRTNT--PIGRDGKLA--KPRQLHNTHWGLVCPAETPEGQACGLVKnlSLMCYVSVG 119
Cdd:CHL00001   375 SQFLDQTNPLTEIVHGRKLSSlgPGGLTGRTAsfRVRDIHPSHYGRICPIDTSEGINAGLIG--SLAIHARIG 445
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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