NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1722483596|gb|QED39729|]
View 

cytochrome b, partial (mitochondrion) [Praomys jacksoni complex sp. 'IVa']

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 777.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   1 NI**THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYM 80
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  81 HANGASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 160
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 161 WIWGGFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTL 240
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 241 VLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQ 320
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1722483596 321 ILYWILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGMIEDNM 374
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNL 376
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 777.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   1 NI**THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYM 80
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  81 HANGASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 160
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 161 WIWGGFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTL 240
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 241 VLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQ 320
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1722483596 321 ILYWILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGMIEDNM 374
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNL 376
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
14-371 2.55e-138

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 399.16  E-value: 2.55e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  14 HSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLF 93
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  94 LHVGRGMYYGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 171
Cdd:COG1290   105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 172 TLTRFFAFH-FILPFIIAALVFVHLLFLHETGSNNPTG----LNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFFPD 246
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 247 llGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYW 324
Cdd:COG1290   265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1722483596 325 ILVANLLVLTWIGGQPVehPFIIIGQLASISYFSIILILMPISGMIE 371
Cdd:COG1290   343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-204 1.34e-94

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 280.79  E-value: 1.34e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   7 PLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGAS 86
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  87 MFFICLFLHVGRGMYYGSY--TFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 164
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1722483596 165 GFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSN 204
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-202 3.25e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 256.54  E-value: 3.25e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  16 FIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  96 VGRGMYYG--SYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 173
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1722483596 174 TRFFAFHFILPFIIAALVFVHLLFLHETG 202
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 227-337 1.19e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 1.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 227 ILGVIMLITFLMTLVlffPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLH 306
Cdd:TIGR01156  44 ILGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1722483596 307 T-SKQRSLMFRPITQILYWIlvaNLLVLTWIG 337
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVFLF---GTVVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 777.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   1 NI**THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYM 80
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  81 HANGASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 160
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 161 WIWGGFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTL 240
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 241 VLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQ 320
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1722483596 321 ILYWILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGMIEDNM 374
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNL 376
CYTB MTH00119
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 702.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   1 NI**THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYM 80
Cdd:MTH00119    4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  81 HANGASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 160
Cdd:MTH00119   84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVE 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 161 WIWGGFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTL 240
Cdd:MTH00119  164 WIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 241 VLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQ 320
Cdd:MTH00119  244 ALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQ 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1722483596 321 ILYWILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGMIEDNM 374
Cdd:MTH00119  324 LLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKM 377
CYTB MTH00131
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 691.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   1 NI**THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYM 80
Cdd:MTH00131    3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  81 HANGASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 160
Cdd:MTH00131   83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 161 WIWGGFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTL 240
Cdd:MTH00131  163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 241 VLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQ 320
Cdd:MTH00131  243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1722483596 321 ILYWILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGMIEDNM 374
Cdd:MTH00131  323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKA 376
CYTB MTH00074
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 673.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   1 NI**THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYM 80
Cdd:MTH00074    4 PIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  81 HANGASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 160
Cdd:MTH00074   84 HANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQ 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 161 WIWGGFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTL 240
Cdd:MTH00074  164 WIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 241 VLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQ 320
Cdd:MTH00074  244 SLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQ 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1722483596 321 ILYWILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGMIEDNM 374
Cdd:MTH00074  324 ILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00191
cytochrome b; Provisional
 5-366 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 653.91  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   5 THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANG 84
Cdd:MTH00191    4 THPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  85 ASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 164
Cdd:MTH00191   84 ASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 165 GFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFF 244
Cdd:MTH00191  164 GFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFS 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 245 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYW 324
Cdd:MTH00191  244 PNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFW 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1722483596 325 ILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPI 366
Cdd:MTH00191  324 LWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 9-364 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 633.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   9 LKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMF 88
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  89 FICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 168
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 169 DKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFFPDLL 248
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 249 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYWILVA 328
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1722483596 329 NLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILM 364
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 5-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 613.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   5 THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANG 84
Cdd:MTH00145    8 SHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  85 ASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 164
Cdd:MTH00145   88 ASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 165 GFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFF 244
Cdd:MTH00145  168 GFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFF 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 245 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYW 324
Cdd:MTH00145  248 PNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFW 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1722483596 325 ILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILmPISGMIEDNM 374
Cdd:MTH00145  328 IFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNI 376
CYTB MTH00034
cytochrome b; Validated
 5-374 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 602.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   5 THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANG 84
Cdd:MTH00034    7 SHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  85 ASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 164
Cdd:MTH00034   87 ASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 165 GFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFF 244
Cdd:MTH00034  167 GFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 245 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYW 324
Cdd:MTH00034  247 PTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFW 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1722483596 325 ILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGMIEDNM 374
Cdd:MTH00034  327 LLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKL 376
CYTB MTH00016
cytochrome b; Validated
 5-374 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 573.55  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   5 THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANG 84
Cdd:MTH00016    8 THPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  85 ASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 164
Cdd:MTH00016   88 ASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 165 GFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFF 244
Cdd:MTH00016  168 GFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLW 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 245 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYW 324
Cdd:MTH00016  248 PNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFW 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1722483596 325 ILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILIlMPISGMIEDNM 374
Cdd:MTH00016  328 LLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI-NPLLMKLWDKL 376
CYTB MTH00022
cytochrome b; Validated
 6-374 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 522.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   6 HPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGA 85
Cdd:MTH00022    7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  86 SMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 165
Cdd:MTH00022   87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 166 FSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFFP 245
Cdd:MTH00022  167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 246 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYWI 325
Cdd:MTH00022  247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWF 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1722483596 326 LVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGMIEDNM 374
Cdd:MTH00022  327 LIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQL 375
CYTB MTH00053
cytochrome b; Provisional
 7-374 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 518.11  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   7 PLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGAS 86
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  87 MFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 166
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 167 SVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFFPD 246
Cdd:MTH00053  170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 247 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYWIL 326
Cdd:MTH00053  250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFL 329

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1722483596 327 VANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGMIEDNM 374
Cdd:MTH00053  330 VGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKL 377
CYTB MTH00224
cytochrome b; Provisional
 5-367 4.55e-180

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 504.84  E-value: 4.55e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   5 THPLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANG 84
Cdd:MTH00224    8 THPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  85 ASMFFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 164
Cdd:MTH00224   88 ASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 165 GFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFF 244
Cdd:MTH00224  168 GFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFE 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 245 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYW 324
Cdd:MTH00224  248 PNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFW 327

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1722483596 325 ILVANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILILMPIS 367
Cdd:MTH00224  328 LLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAIS 370
CYTB MTH00033
cytochrome b; Provisional
 17-372 1.50e-138

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 399.70  E-value: 1.50e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  17 IDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHV 96
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  97 GRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 176
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 177 FAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVL--FFPDLLGDPDNY 254
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 255 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYWILVANLLVLT 334
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1722483596 335 WIGGQPV-EHPFIIIGQLASISYFSIILILMPISGMIED 372
Cdd:MTH00033  336 WIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
14-371 2.55e-138

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 399.16  E-value: 2.55e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  14 HSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLF 93
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  94 LHVGRGMYYGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 171
Cdd:COG1290   105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 172 TLTRFFAFH-FILPFIIAALVFVHLLFLHETGSNNPTG----LNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFFPD 246
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 247 llGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYW 324
Cdd:COG1290   265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1722483596 325 ILVANLLVLTWIGGQPVehPFIIIGQLASISYFSIILILMPISGMIE 371
Cdd:COG1290   343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 10-364 4.56e-124

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 361.56  E-value: 4.56e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  10 KMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFF 89
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  90 ICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVD 169
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 170 KATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLItFLMTLVLFFPDLLG 249
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 250 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQrslMFRPITQILYWILVAN 329
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1722483596 330 LLVLTWIGGQPVEHPFIIIGQLASISYFSIILILM 364
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 8-362 5.08e-96

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 289.96  E-value: 5.08e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   8 LLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASM 87
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  88 FFICLFLHVGRGMYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 167
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 168 VDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSNNPTGL-NSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFFPD 246
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 247 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvLALVLSILVLAFLPflhtSKQRSLMFRPITQILYWIL 326
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1722483596 327 VANLLVLTWIGGQPVEHPFIIIGQLASISYFSIILI 362
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-204 1.34e-94

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 280.79  E-value: 1.34e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596   7 PLLKMINHSFIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGAS 86
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  87 MFFICLFLHVGRGMYYGSY--TFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 164
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1722483596 165 GFSVDKATLTRFFAFHFILPFIIAALVFVHLLFLHETGSN 204
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-202 3.25e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 256.54  E-value: 3.25e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  16 FIDLPAPSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  96 VGRGMYYG--SYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 173
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1722483596 174 TRFFAFHFILPFIIAALVFVHLLFLHETG 202
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 205-352 9.26e-58

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 184.77  E-value: 9.26e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 205 NPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 284
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1722483596 285 KLGGVLALVLSILVLAFLPFLHTSKQRSlMFRPITQILYWILVANLLVLTWIGGQPVEHPFIIIGQLA 352
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
256-356 4.58e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 160.72  E-value: 4.58e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 256 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLHTSKQRSLMFRPITQILYWILVANLLVLTW 335
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1722483596 336 IGGQPVEHPFIIIGQLASISY 356
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
86-251 1.00e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 157.02  E-value: 1.00e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  86 SMFFICLFLHVGRGMYYGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 163
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 164 GGFSVDKATLTRFFAFHF-ILPFIIAALVFVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGVIMLITFLMTLVL 242
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1722483596 243 FFPDLLGDP 251
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 31-206 5.93e-41

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 143.70  E-value: 5.93e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  31 FGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGSYTFME- 109
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 110 -TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 187
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1722483596 188 AALVFVHLLFLHETGSNNP 206
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 22-206 1.61e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 126.37  E-value: 1.61e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596  22 PSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMY 101
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 102 YGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 179
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1722483596 180 H-FILPFIIAALVFVHLLFLHETGSNNP 206
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 227-337 2.44e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 61.56  E-value: 2.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 227 ILGVIMLITFLMTLVlffPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLH 306
Cdd:CHL00058   44 ILGTIACNVGLAVLE---PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1722483596 307 TSKQRSLMF-RPITQILYWIlvaNLLVLTWIG 337
Cdd:CHL00058  116 NVNKFQNPFrRPVATTVFLI---GTAVALWLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 227-337 6.87e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.19  E-value: 6.87e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 227 ILGVIMLITFLMTLVlffPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLH 306
Cdd:COG5679    45 ILGTIALCIGLAVLD---PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1722483596 307 T-SKQRSLMFRPITQILYWIlvaNLLVLTWIG 337
Cdd:COG5679   117 NvNKFQNPFRRPVATAVFLF---GTLVTLWLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 227-337 1.19e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 1.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722483596 227 ILGVIMLITFLMTLVlffPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILVLAFLPFLH 306
Cdd:TIGR01156  44 ILGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1722483596 307 T-SKQRSLMFRPITQILYWIlvaNLLVLTWIG 337
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVFLF---GTVVALWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH