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Conserved domains on  [gi|1722559033|gb|QED42827|]
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DNA binding protein [Silene caulimovirus A]

Protein Classification

Cauli_DNA-bind domain-containing protein( domain architecture ID 10505576)

Cauli_DNA-bind domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cauli_DNA-bind pfam03310
Caulimovirus DNA-binding protein; The gene III product of cauliflower mosaic virus (CaMV) is ...
 10-123 2.15e-33

Caulimovirus DNA-binding protein; The gene III product of cauliflower mosaic virus (CaMV) is known as virion-associated protein or P3, which is tightly associated with the virus particles and has a regulatory function in the virus infection cycle. P3 decorate the virions; its N-terminal domain forms an antiparallel alpha-helical coiled-coil network at the surface and the C-terminal domain interacts with the C-terminal half of the coat protein. It is a DNA binding protein in which the DNA binding activity is located on its C-terminal part.


:

Pssm-ID: 460882  Cd Length: 117  Bit Score: 112.97  E-value: 2.15e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722559033  10 ILEVENNQKTIESKIDQILAKLGSHTPNNDqKLESIAAKIISDLTKEMKECHCNKEIVDILNKEKSMVPAT-KDKEEESK 88
Cdd:pfam03310   4 LSELIEKVKKEIKEIKAILEKSKSQPPIKE-NLEAAAAKIIKDITKKIDKCPCNKEILEALKKQPEKDKQIiPTPKEPGT 82

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1722559033  89 STKFGKPQYTFPNFDVGNEGMGSSKNPNALTWPFE 123
Cdd:pfam03310  83 SKSSNLQKYSYPNYNVGNEELGSSGNPNALVWPPR 117
 
Name Accession Description Interval E-value
Cauli_DNA-bind pfam03310
Caulimovirus DNA-binding protein; The gene III product of cauliflower mosaic virus (CaMV) is ...
 10-123 2.15e-33

Caulimovirus DNA-binding protein; The gene III product of cauliflower mosaic virus (CaMV) is known as virion-associated protein or P3, which is tightly associated with the virus particles and has a regulatory function in the virus infection cycle. P3 decorate the virions; its N-terminal domain forms an antiparallel alpha-helical coiled-coil network at the surface and the C-terminal domain interacts with the C-terminal half of the coat protein. It is a DNA binding protein in which the DNA binding activity is located on its C-terminal part.


Pssm-ID: 460882  Cd Length: 117  Bit Score: 112.97  E-value: 2.15e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722559033  10 ILEVENNQKTIESKIDQILAKLGSHTPNNDqKLESIAAKIISDLTKEMKECHCNKEIVDILNKEKSMVPAT-KDKEEESK 88
Cdd:pfam03310   4 LSELIEKVKKEIKEIKAILEKSKSQPPIKE-NLEAAAAKIIKDITKKIDKCPCNKEILEALKKQPEKDKQIiPTPKEPGT 82

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1722559033  89 STKFGKPQYTFPNFDVGNEGMGSSKNPNALTWPFE 123
Cdd:pfam03310  83 SKSSNLQKYSYPNYNVGNEELGSSGNPNALVWPPR 117
 
Name Accession Description Interval E-value
Cauli_DNA-bind pfam03310
Caulimovirus DNA-binding protein; The gene III product of cauliflower mosaic virus (CaMV) is ...
 10-123 2.15e-33

Caulimovirus DNA-binding protein; The gene III product of cauliflower mosaic virus (CaMV) is known as virion-associated protein or P3, which is tightly associated with the virus particles and has a regulatory function in the virus infection cycle. P3 decorate the virions; its N-terminal domain forms an antiparallel alpha-helical coiled-coil network at the surface and the C-terminal domain interacts with the C-terminal half of the coat protein. It is a DNA binding protein in which the DNA binding activity is located on its C-terminal part.


Pssm-ID: 460882  Cd Length: 117  Bit Score: 112.97  E-value: 2.15e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1722559033  10 ILEVENNQKTIESKIDQILAKLGSHTPNNDqKLESIAAKIISDLTKEMKECHCNKEIVDILNKEKSMVPAT-KDKEEESK 88
Cdd:pfam03310   4 LSELIEKVKKEIKEIKAILEKSKSQPPIKE-NLEAAAAKIIKDITKKIDKCPCNKEILEALKKQPEKDKQIiPTPKEPGT 82

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1722559033  89 STKFGKPQYTFPNFDVGNEGMGSSKNPNALTWPFE 123
Cdd:pfam03310  83 SKSSNLQKYSYPNYNVGNEELGSSGNPNALVWPPR 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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