NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1779817176|gb|QGQ59541|]
View 

beta-galactosidase alpha subunit [Cloning vector pANe-3]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Bgal_small_N super family cl46900
Beta galactosidase small chain; This domain comprises the small chain of dimeric ...
 25-78 2.75e-28

Beta galactosidase small chain; This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase.


The actual alignment was detected with superfamily member PRK09525:

Pssm-ID: 481240 [Multi-domain]  Cd Length: 1027  Bit Score: 106.94  E-value: 2.75e-28
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1779817176   25 SLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWR 78
Cdd:PRK09525     7 SLAQILARRDWENPGVTQLNRLPAHPPFASWRNSEAARDDRPSQQRQSLNGEWR 60
 
Name Accession Description Interval E-value
lacZ PRK09525
beta-galactosidase;
25-78 2.75e-28

beta-galactosidase;


Pssm-ID: 236548 [Multi-domain]  Cd Length: 1027  Bit Score: 106.94  E-value: 2.75e-28
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1779817176   25 SLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWR 78
Cdd:PRK09525     7 SLAQILARRDWENPGVTQLNRLPAHPPFASWRNSEAARDDRPSQQRQSLNGEWR 60
 
Name Accession Description Interval E-value
lacZ PRK09525
beta-galactosidase;
25-78 2.75e-28

beta-galactosidase;


Pssm-ID: 236548 [Multi-domain]  Cd Length: 1027  Bit Score: 106.94  E-value: 2.75e-28
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1779817176   25 SLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWR 78
Cdd:PRK09525     7 SLAQILARRDWENPGVTQLNRLPAHPPFASWRNSEAARDDRPSQQRQSLNGEWR 60
ebgA PRK10340
cryptic beta-D-galactosidase subunit alpha; Reviewed
 35-83 9.66e-05

cryptic beta-D-galactosidase subunit alpha; Reviewed


Pssm-ID: 236673 [Multi-domain]  Cd Length: 1021  Bit Score: 39.66  E-value: 9.66e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1779817176   35 WENPGVTQLNRLAAHPPFASWRNSEEARTDRP--SQQLRSLNGEWRLmRYF 83
Cdd:PRK10340     4 WENIQLTHENRLAPRAYFFSYDSVAQARTFARetSSLFLLLSGQWNF-HFF 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH