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Conserved domains on  [gi|1797022922|gb|QHH25527|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Phyllergates sp. 2 GLee-2020]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 6.47e-157

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.11  E-value: 6.47e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   1 LVFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDI 80
Cdd:MTH00112    7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPALLTCMALLSAALGG 160
Cdd:MTH00112   87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 161 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLL 240
Cdd:MTH00112  167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 241 TLLSLAGLPPLTGFLPKWLIIQELTKQSMASAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTCKPTPTLVA 320
Cdd:MTH00112  247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326

                         330
                  ....*....|....*...
gi 1797022922 321 VLIATSTMLLPVSPMIST 338
Cdd:MTH00112  327 TLTTLSTLLLPLSPMILT 344
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 6.47e-157

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.11  E-value: 6.47e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   1 LVFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDI 80
Cdd:MTH00112    7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPALLTCMALLSAALGG 160
Cdd:MTH00112   87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 161 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLL 240
Cdd:MTH00112  167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 241 TLLSLAGLPPLTGFLPKWLIIQELTKQSMASAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTCKPTPTLVA 320
Cdd:MTH00112  247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326

                         330
                  ....*....|....*...
gi 1797022922 321 VLIATSTMLLPVSPMIST 338
Cdd:MTH00112  327 TLTTLSTLLLPLSPMILT 344
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-264 2.01e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.27  E-value: 2.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   8 LLGTTITISSNHWVMAWAGLEINTLAILPLIS-KSHHPRAVEAATKYFLAQATASALVLF-SSMTnswY--TGQWDITQL 83
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLL---YgaTGSLNLAGI 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  84 THPVS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMK----FPPITLFFMTSHSLNPA- 146
Cdd:COG1007   189 AAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADw 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 147 --LLTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK-LTLLNFYL--YALMTAAAFLALNSI-KAS 219
Cdd:COG1007   269 qlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLsRKG 348

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1797022922 220 KLSTLMTSWA----KTPALSTMLLLTLLSLAGLPPLTGFLPKWLIIQEL 264
Cdd:COG1007   349 GEAEEIEDLAglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-262 2.85e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 2.85e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  17 SNHWVMAWAGLEINTLAILPLI-SKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDITQL-----------T 84
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  85 HPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPA------LLTCMALLSAAL 158
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 159 GGWMGLNQTQIRKILAFSSISHLGWMTIIIS----YNPKLTLLNFYLYALMTAAAFLALNSI----KASKLSTLMTSWAK 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1797022922 231 T-PALSTMLLLTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:pfam00361 241 TmPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-273 1.35e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.93  E-value: 1.35e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   8 LLGTTITISSNHWVMAWAGLEINTLAILPLIS-KSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDITQLTHP 86
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  87 VSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMK----FPPITLFFMTSHSLNPA---L 147
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEAwqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 148 LTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YALMTAAAFLALNSIKASKLS- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1797022922 223 ----TLMTSWAKT-PALSTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQSMASAA 273
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLA 407
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 6.47e-157

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.11  E-value: 6.47e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   1 LVFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDI 80
Cdd:MTH00112    7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPALLTCMALLSAALGG 160
Cdd:MTH00112   87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 161 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLL 240
Cdd:MTH00112  167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 241 TLLSLAGLPPLTGFLPKWLIIQELTKQSMASAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTCKPTPTLVA 320
Cdd:MTH00112  247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTA 326

                         330
                  ....*....|....*...
gi 1797022922 321 VLIATSTMLLPVSPMIST 338
Cdd:MTH00112  327 TLTTLSTLLLPLSPMILT 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 2-336 1.71e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 365.78  E-value: 1.71e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   2 VFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDIT 81
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  82 QLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPALLTCMALLSAALGGW 161
Cdd:MTH00070   88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 162 MGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLLT 241
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 242 LLSLAGLPPLTGFLPKWLIIQELTKQSMASAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTCKPTPTLVAV 321
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSL 327

                         330
                  ....*....|....*
gi 1797022922 322 LIATSTMLLPVSPMI 336
Cdd:MTH00070  328 TIILSLMLLPITPTI 342
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 5-338 2.31e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 365.67  E-value: 2.31e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   5 ISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDITQLT 84
Cdd:MTH00135   11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  85 HPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSlNPALLTCMALLSAALGGWMGL 164
Cdd:MTH00135   91 HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGL 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 165 NQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLLTLLS 244
Cdd:MTH00135  170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLS 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 245 LAGLPPLTGFLPKWLIIQELTKQSMASAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTCKPTPTL-VAVLI 323
Cdd:MTH00135  250 LGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLAIST 329

                         330
                  ....*....|....*
gi 1797022922 324 ATSTMLLPVSPMIST 338
Cdd:MTH00135  330 TATLMLLPLTPAILA 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-338 2.40e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 327.57  E-value: 2.40e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   1 LVFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDI 80
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPALLTCMALLSAALGG 160
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 161 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLL 240
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 241 TLLSLAGLPPLTGFLPKWLIIQELTKQSMASAATAISLLSLLGLFFYLRLAYCATITLPPhTTNHMK-QWH-TCKPTPTL 318
Cdd:MTH00105  247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfENTKPMTL 325

                         330       340
                  ....*....|....*....|
gi 1797022922 319 VAVLIATSTMLLPVSPMIST 338
Cdd:MTH00105  326 LPTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-338 1.30e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 279.93  E-value: 1.30e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   1 LVFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDI 80
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPALLTCMALLSAALGG 160
Cdd:MTH00200   87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 161 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLL 240
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 241 TLLSLAGLPPLTGFLPKWLIIQELTKQSMASAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTCKPTPTLVA 320
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326

                         330
                  ....*....|....*...
gi 1797022922 321 VLIATSTMLLPVSPMIST 338
Cdd:MTH00200  327 LLLLLSILGLPLTPQLLF 344
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-261 3.66e-74

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 232.51  E-value: 3.66e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   1 LVFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDI 80
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPALLTCMALLSAALGG 160
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 161 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLL 240
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260
                  ....*....|....*....|.
gi 1797022922 241 TLLSLAGLPPLTGFLPKWLII 261
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-269 7.78e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 176.94  E-value: 7.78e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   1 LVFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWytgqwdI 80
Cdd:MTH00160    8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------N 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFfmtSHSLNPALLTCMALLSAALGG 160
Cdd:MTH00160   82 LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 161 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLL 240
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260
                  ....*....|....*....|....*....
gi 1797022922 241 TLLSLAGLPPLTGFLPKWLIIQELTKQSM 269
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNM 267
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-269 7.14e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 156.20  E-value: 7.14e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   1 LVFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDI 80
Cdd:MTH00144    7 LLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TqlthpvscLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPALLTC-MALLSAALG 159
Cdd:MTH00144   87 M--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCvISVLSALVG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 160 GWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSiKASKLSTLMTSWAKTPALSTMLL 239
Cdd:MTH00144  159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLSII 237

                         250       260       270
                  ....*....|....*....|....*....|
gi 1797022922 240 LTLLSLAGLPPLTGFLPKWLIIQELTKQSM 269
Cdd:MTH00144  238 SLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-269 3.45e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.86  E-value: 3.45e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   1 LVFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSmtnswyTGQWDI 80
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPALLTCMALLSAALGG 160
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 161 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLL 240
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260
                  ....*....|....*....|....*....
gi 1797022922 241 TLLSLAGLPPLTGFLPKWLIIQELTKQSM 269
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 2-264 3.42e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 135.57  E-value: 3.42e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   2 VFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSwytgqwdIT 81
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  82 QLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPitLFFMTSHSLNPALLTCMALLSAALGGW 161
Cdd:MTH00197   75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 162 MGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALMTAAAFLALNSIKASKLSTLMTSWAKTPALSTMLLLT 241
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260
                  ....*....|....*....|...
gi 1797022922 242 LLSLAGLPPLTGFLPKWLIIQEL 264
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSL 255
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-264 2.01e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.27  E-value: 2.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   8 LLGTTITISSNHWVMAWAGLEINTLAILPLIS-KSHHPRAVEAATKYFLAQATASALVLF-SSMTnswY--TGQWDITQL 83
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLL---YgaTGSLNLAGI 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  84 THPVS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMK----FPPITLFFMTSHSLNPA- 146
Cdd:COG1007   189 AAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADw 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 147 --LLTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK-LTLLNFYL--YALMTAAAFLALNSI-KAS 219
Cdd:COG1007   269 qlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLsRKG 348

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1797022922 220 KLSTLMTSWA----KTPALSTMLLLTLLSLAGLPPLTGFLPKWLIIQEL 264
Cdd:COG1007   349 GEAEEIEDLAglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-262 2.85e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 2.85e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  17 SNHWVMAWAGLEINTLAILPLI-SKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDITQL-----------T 84
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  85 HPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPA------LLTCMALLSAAL 158
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 159 GGWMGLNQTQIRKILAFSSISHLGWMTIIIS----YNPKLTLLNFYLYALMTAAAFLALNSI----KASKLSTLMTSWAK 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1797022922 231 T-PALSTMLLLTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:pfam00361 241 TmPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 7-261 2.07e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 99.33  E-value: 2.07e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   7 LLLGTTITISSNHWVMAWAGLEINTLAILPLI-SKSHHPRAVEAATKYFLAQATASALVLFS-------------SMTNS 72
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  73 WYTGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFmtSHSLNPALLTCMA 152
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 153 LLSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNP----KLTLLNFYLYALMTAAAFLALNSIKASK--LSTLMT 226
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1797022922 227 SWAKTPALSTMLLLTLLSLAGLPPLTGFLPKWLII 261
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 7-261 3.99e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.54  E-value: 3.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   7 LLLGTTITISSNHWVMAWAGLEINTLAILPLIS-KSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDI----T 81
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  82 QLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVmkfPPITLF--FMTSHSLNPALLTCmALLSAALG 159
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATV---PKIGVFsiLVQIGPVTNVVLIC-AVLSIIYG 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 160 GWMGLNQTQIRKILAFSSISHLG---WMTIIISYNP-KLTLLNFYLYALMTAAAFLALNSIKASK--LSTLMTSWAKTPA 233
Cdd:MTH00199  262 AIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPV 341

                         250       260
                  ....*....|....*....|....*...
gi 1797022922 234 LSTMLLLTLLSLAGLPPLTGFLPKWLII 261
Cdd:MTH00199  342 IALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-210 1.17e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 92.19  E-value: 1.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   8 LLGTTITISSNHWVMAWAGLEINTLAILPLIS-KSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDITQLTHP 86
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  87 VS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMK---FPPIT-LFFMTSHSLNPA---L 147
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1797022922 148 LTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTL--LNFYL--YALMTAAAF 210
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAF 339
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-273 1.35e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.93  E-value: 1.35e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   8 LLGTTITISSNHWVMAWAGLEINTLAILPLIS-KSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDITQLTHP 86
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  87 VSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMK----FPPITLFFMTSHSLNPA---L 147
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEAwqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 148 LTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YALMTAAAFLALNSIKASKLS- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1797022922 223 ----TLMTSWAKT-PALSTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQSMASAA 273
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLA 407
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-272 1.79e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.21  E-value: 1.79e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   9 LGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAV---------EAATKYFLAQATASALVLFSSMTNSWYTGQ-- 77
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  78 ------------WDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFppITLFFMTSHSLNP 145
Cdd:MTH00198  279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 146 ALLTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYALM----TAAAFLAL-------- 213
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsALASFTVIctleefgt 436

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1797022922 214 -------------NSIKASKLSTLMTSWAKTPALSTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQSMASA 272
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSS 508
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 7-276 1.82e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 76.72  E-value: 1.82e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   7 LLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDITQLTHP 86
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  87 VS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPI-------TLFF--MTSHSLNPAL 147
Cdd:COG0651   196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVyailrvlTLLFgaDPALFLGTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 148 LTcMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY----ALMTAAAFLALNSI----KAS 219
Cdd:COG0651   276 LV-LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIeratGTR 354

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1797022922 220 KLSTLMTSWAKTPALSTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQSMASAATAI 276
Cdd:COG0651   355 DLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-210 3.72e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 63.87  E-value: 3.72e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   1 LVFTISLLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHP-RAVEAATKYFLAQATASALVLFSSmtnSWYTGQ-- 77
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVYGF---SWLYGLsg 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  78 -----WDI------TQLTHPVSCLI----LTSAIAMKLGLVPFHFWFPEVLQGS-----------SLTTGLLLSTVMkfp 131
Cdd:CHL00049  191 geielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRI--- 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 132 pITLFFMTSHSLNPALLTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK------LTLLNFYLyaL 204
Cdd:CHL00049  268 -FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYI--F 344


                  ....*.
gi 1797022922 205 MTAAAF 210
Cdd:CHL00049  345 MNLGTF 350
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 43-192 6.60e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.09  E-value: 6.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  43 HPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQW--DITQLTH-----PVSCLILTS---AIAMKLGLVPFHFWFPEV 112
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 113 LQGSSLTTGLLLSTVM---------KFPpITLFFMTSHSLNPALLTcMALLSAALGGWMGLNQTQIRKILAFSSISHLGW 183
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313

                         170
                  ....*....|
gi 1797022922 184 MTI-IISYNP 192
Cdd:COG1008   314 VLLgIFALNP 323
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-260 5.34e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 54.33  E-value: 5.34e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  27 LEINTLAILPLIS-KSHHPRAVEAATKYFLAQATASALVLFSSmtnSWYTGQWDI-------------TQLTHPVSCLIL 92
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  93 TSAIAMKLGLVPFHFWFPEVLQG--SSLTTGLLLSTVMKFPPI--TLFFMTSHSLNPA----LLTCMALLSAALGGWMGL 164
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 165 NQTQIRKILAFSSISHLGWMTI-----IISY-NPKLT----------LLNFYLYALMTAAAFLA----LNSIKASKLSTL 224
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1797022922 225 MTSWAKTPALSTMLLLTLLSLAGLPPLTGFLPKWLI 260
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
44-213 7.47e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.52  E-value: 7.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  44 PRAVEAATKYFLAQATASALVLF-SSMTNSWYTGQwdiTQLTH----------PVSCLILT---SAIAMKLGLVPFHFWF 109
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAialalitspsLGLALALVfviAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 110 PEVLQGSSLTTGLLLSTVMKFPPITL---FFMTSHSLNP----ALLTCMALLSAALGGWMGLNQTQIRKILAFSSISHLG 182
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1797022922 183 WMTI--IISYNPKLTLLNFYL--YALMTAAAFLAL 213
Cdd:PRK02504  314 FVMIglVAGTEAGYASMVFYLlaYLFMNLGAFACV 348
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 44-192 2.21e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.25  E-value: 2.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  44 PRAVEAATKYFLAQATASALVLFSSMTNSWYTGQ-WDITQL-THPVSC-------LILTSAIAMKLGLVPFHFWFPEV-- 112
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 113 ---LQGSSLTTGLLLST----VMKFpPITLFFMTSHSLNPaLLTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMT 185
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309


                  ....*...
gi 1797022922 186 I-IISYNP 192
Cdd:TIGR01972 310 LgIFSFNE 317
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 44-188 1.53e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 49.43  E-value: 1.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  44 PRAVEAATKYFLAQATASALVLFSSMTNSWY----TGQWDITQL-THPVSC-------LILTSAIAMKLGLVPFHFWFPE 111
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 112 VLQ-----GSSLTTGLLLST----VMKFPpITLFFMTSHSLNPALLTcMALLSAALGGWMGLNQTQIRKILAFSSISHLG 182
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMgaygLLRFS-LPLFPDASHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                  ....*.
gi 1797022922 183 WMTIII 188
Cdd:PRK05846  315 FVTLGI 320
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 3-186 2.76e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.77  E-value: 2.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   3 FTISLLLgttiTISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTnSWYTGQwdiTQ 82
Cdd:PRK06458  117 FLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIL-VYANAA---TV 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  83 LTHPVSCLILTSAIAM----------------------KLGLVPFHFWFPEVLQG-----SSLTTGLLLST----VMKFP 131
Cdd:PRK06458  189 MGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNValyaVLRYY 268

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1797022922 132 PITLFFMTSHSLNPaLLTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTI 186
Cdd:PRK06458  269 ILIDAAIGSDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-276 3.72e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 48.34  E-value: 3.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  27 LEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFS-----SMTNswYTGQWDITQLTHPVSCL-----ILTSAI 96
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllyGVTG--TLNMADLAGALAENPTVvtafgFVLLAL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  97 AMKLGLVPFHFWFPEVLQG-SSLTTGLLLSTVMK----------FPPITLFFMTSHSLNPALLTcMALLSAALGGWMGLN 165
Cdd:PRK08375  213 ALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKvavyaliriyFTVFGGDFRFALGLGWLLAV-LALLSMLVGSLAALG 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 166 QTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YALMTAAAFLALNSI-------KASKLSTLMTswaKTPAL 234
Cdd:PRK08375  292 QDDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIevtygtrRLSELSGLGR---RMPLT 368

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1797022922 235 STMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQSMASAATAI 276
Cdd:PRK08375  369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 90-257 7.73e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.61  E-value: 7.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  90 LILTSAIAmKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLF------FMTSHSLNPALLTcMALLSAALGGWMG 163
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 164 LNQTQIRKILAFSSISHLGWMTIIISYNPK------LTLLnfYLYALMTAAAFLALNSIKAS-------KLSTLmtsWAK 230
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIDHStgtrdirKLSGL---GRR 360

                         170       180
                  ....*....|....*....|....*..
gi 1797022922 231 TPALSTMLLLTLLSLAGLPPLTGFLPK 257
Cdd:PRK12644  361 QPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 28-269 8.60e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 47.30  E-value: 8.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  28 EINTLAILPLISKSHHpRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDIT-------QLTHPVSCLI----LTSAI 96
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  97 AMKLGLVPFHFWFPE-----------VLQGSSLTTG-LLLSTVMKFPPITLFFMT-----SHSLNPALLTCMALLSAALG 159
Cdd:PRK08668  207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaYGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISIIVG 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 160 GWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLT----LLNFYLYALMTAAAFLALNSI----KASKLSTLMTSWAKT 231
Cdd:PRK08668  287 TLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEKM 366

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1797022922 232 PALSTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQSM 269
Cdd:PRK08668  367 PFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 17-186 1.29e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.68  E-value: 1.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  17 SNHWVMAWAGLEINTLAILPLISKSHH-PRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDITQLTH---------- 85
Cdd:COG1009   130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilsspl 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  86 --PVSCLILTSAIAmKLGLVPFHFWFPEVLQG----SSL-------TTGLLLstVMKFPPItlFFMTSHSLnpALLTCMA 152
Cdd:COG1009   210 ltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGptpvSALlhaatmvKAGVYL--LARLSPL--FALSPVWL--TVVAIIG 282

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1797022922 153 LLSAALGGWMGLNQTQIRKILAFSSISHLGWMTI 186
Cdd:COG1009   283 AITALFAALIALAQTDIKRVLAYSTVSQLGYMFL 316
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 289-334 3.22e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 40.70  E-value: 3.22e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1797022922 289 RLAYCATITLPPHTTNHMKQWHTCKPTPT-LVAVLIATSTMLLPVSP 334
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-261 4.39e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.11  E-value: 4.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  27 LEINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFS-----SMTNSWYTGqwDITQLTHP--------VSCLILT 93
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  94 SAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLS----TVMKFPPITL--------FFMTSHSLNPALLtCMALLSAALGGW 161
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIvydvfkanFVFTTLPFNNVFM-ILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 162 MGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY----ALMTAAAFLALNSIK----ASKLSTLMTSWAKTPA 233
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 1797022922 234 LSTMLLLTLLSLAGLPPLTGFLPKWLII 261
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
49-197 7.82e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.31  E-value: 7.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  49 AATKYFLAQATASALVLFSSMTNSWYTG--QWDITQL---THPVSCLILTSA-----IAMKLGLVPFHFWFPEVLQGSSL 118
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAHVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 119 TTGLLLSTVM---------KFPpITLFFMTSHSLNPALLTcMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIS 189
Cdd:PRK06473  238 PVSVLLAGVLlklgtygllRFG-VGLFPEAWVYLAPWLAT-WAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAA 315


                  ....*...
gi 1797022922 190 YNPKLTLL 197
Cdd:PRK06473  316 AATPLSIL 323
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 7-188 2.30e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 42.82  E-value: 2.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922   7 LLLGTTITISSNHWVMAWAGLEINTLAILPLISKSHHPRAVEAATKYFLAQATA------SALVLFSSMTNSWYTGQWDI 80
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TQLTHPV----------SCLILTSAIAMKLGLVPFHFWFPEV-LQGSSLTTGLLLSTVMKFPPITLFFMTS-------HS 142
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1797022922 143 LNPALLTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTIII 188
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 86-265 2.41e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.02  E-value: 2.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  86 PVSCLILTSAI--AMKLGLvpfHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSLNPA-----LLTCMALLSAAL 158
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKApltllIITIFGALTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 159 GGWMGLNQTQIRKILAFSSISHLGWMTIIISY--NPKLTLLNFYLYALMTAAAFLALNSIKAS---------KLSTLMTS 227
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVIHSttvdeqdmrKMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1797022922 228 wakTPALSTMLLLTLLSLAGLPPLTGFLPKWLIIqELT 265
Cdd:MTH00032  383 ---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK12650 PRK12650
DUF4040 family protein;
81-257 4.77e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 4.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  81 TQLTHPVSCLILTSAIAmKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLF--FMTSHSLNPA---LLTCMALLS 155
Cdd:PRK12650  204 PGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLlrFSPVFHDVAVwnwLLIIVGMIT 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 156 AALGGWMGLNQTQIRKILAFSSISHLGWM--TIIISYNPKLT--LLNFYLYALMTAAAFLALNSIK----ASKLSTLMTS 227
Cdd:PRK12650  283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWIvaTIGVGTPFALTaaVVHTLAHALFKSSLFMLIGVVDhqagTRDIRRLGSL 362

                         170       180       190
                  ....*....|....*....|....*....|
gi 1797022922 228 WAKTPALSTMLLLTLLSLAGLPPLTGFLPK 257
Cdd:PRK12650  363 WRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 103-260 8.99e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.06  E-value: 8.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 103 VPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLFFMTSHSL--NPALLTCMALLSAA---LGGWMGLNQTQIRKILAFSS 177
Cdd:PRK12647  212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLggTPLWQTILPLFGGLtmlTGALLAVRQTDLKLILAYST 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 178 ISHLGWMTIIISYNPKLTLLNFYLY----ALMTAAAFLALNSIK-------ASKLSTLmtsWAKTPALSTMLLLTLLSLA 246
Cdd:PRK12647  292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSMA 368

                         170
                  ....*....|....
gi 1797022922 247 GLPPLTGFLPKWLI 260
Cdd:PRK12647  369 GLPPLFGFLAKELI 382
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
49-197 1.23e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.47  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  49 AATKYFLAQATASALVLFSSMTNSWYTGQWD------ITQLTHPVSCLILTSAI----AMKLGLVPFHFWFPEVLQGSSL 118
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 119 TTGLLLSTVM---------KFPpITLFFMTSHSLNPALLTcMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIS 189
Cdd:PRK07363  238 AVAILLGGVLaklgtygllRFG-LQLFPQTWSLVAPGLAI-IGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAA 315


                  ....*...
gi 1797022922 190 YNPKLTLL 197
Cdd:PRK07363  316 AGTQLSLL 323
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 49-189 2.44e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 39.63  E-value: 2.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  49 AATKYFLAQATASALVLFSSMTNSWYTGQ--WDITQLTH---PVSCLILTS-----AIAMKLGLVPFHFWFPE------- 111
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDahgeasa 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 112 ----VLQGSSLTTG---LLLSTVMKFPPITLFFMtshslnPALLtCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWM 184
Cdd:PRK12561  218 pvsmILAGVLLKMGgyaLIRFNVQMLPDAHVYFA------PALA-ILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290


                  ....*
gi 1797022922 185 TIIIS 189
Cdd:PRK12561  291 LLGIA 295
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 95-188 3.02e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.13  E-value: 3.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  95 AIAMKLGLVPFHFWFPEV-----LQGSSLTTGLLLS------TVMKFPPITLffmTSHSLNPALLTcMALLSAALGGWMG 163
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglVRLSWPILPL---GAQNLAPAVIA-MGIVGIVYGSFAT 314

                          90       100
                  ....*....|....*....|....*
gi 1797022922 164 LNQTQIRKILAFSSISHLGWMTIII 188
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITL 339
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
28-262 4.42e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.86  E-value: 4.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  28 EINTLAILPLISKSHHPRAVEAATKYFLAQATASALVLFSSMTNSWYTGQWDITQ-----LTHPVSCLILTSAIAMKLGL 102
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 103 V------PFHFWFPEVLQGSSLTTGLLLSTVMKFPPITL-------FFMTSH-SLNPALLTCMALLSAALGGWMGLNQTQ 168
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifklFGGLSYfPSAQGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922 169 IRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYA----LMTAAAFLALNSI----KASKLSTLMTSWAKTPALSTMLLL 240
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260
                  ....*....|....*....|..
gi 1797022922 241 TLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQ 391
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 95-186 7.63e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 38.12  E-value: 7.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  95 AIAMKLGLVPFHFWFPEV-----LQGSSLTTGLLLST----VMKFpPITLFFMTSHSLNPALLTcMALLSAALGGWMGLN 165
Cdd:MTH00204  218 SLAVKIPQIPFHIWLPQAhveapVAGSVILAGILLKLggygFLRF-SWPLFPAASEYFAPLIVM-LSVIAVIYGSLTTCR 295

                          90       100
                  ....*....|....*....|.
gi 1797022922 166 QTQIRKILAFSSISHLGWMTI 186
Cdd:MTH00204  296 QVDFKRLIAYSSVAHMGLVPL 316
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 62-211 8.12e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 38.01  E-value: 8.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1797022922  62 ALVLFSSMTNSWYTGQWDITQLTHPVSCLILTSAIAMKLGLVPFHFWFPEVLQGSSLTTGLLLSTVMKFPPITLF----- 136
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLirlsp 259

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1797022922 137 FMTSHSLNPALLTCMALLSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYN-PKLTLLNFYLYALMTAAAFL 211
Cdd:MTH00211  260 LFQNNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNqPQLAFLHICTHAFFKAMLFM 335
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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