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Conserved domains on  [gi|1818982598|gb|QII14714|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Parmoptila jamesoni]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.37e-164

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.98  E-value: 3.37e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   1 MNPQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPTLLTTMAII 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 241 GTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMISLLSLLGLFFYLRLAYCATITLPPHTINHMKQWRTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1818982598 321 TNTLVAITTSLSITLLPISPMILTIV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.37e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.98  E-value: 3.37e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   1 MNPQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPTLLTTMAII 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 241 GTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMISLLSLLGLFFYLRLAYCATITLPPHTINHMKQWRTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1818982598 321 TNTLVAITTSLSITLLPISPMILTIV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-275 2.30e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.27  E-value: 2.30e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  14 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAwYTGQWDITQLTH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  92 PTS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLF----MTSHSLNP---T 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 153 LLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLAL--LNFYL--YALMITAVFLTLNSIK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1818982598 224 ALKLSTLMTAWTKAPALGTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNM 275
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGL 402
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 7.60e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 99.31  E-value: 7.60e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  91 HPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLIL-STAMKLPPMALLFMTS--HSLNPT---LLTTMAIISTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 165 GGWMGLNQTQTRKILAFSSISHLGWMAIII----TYNPKLALLNFYLYALMITAVFLTLNS-IKALKLSTLMTA----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1818982598 236 KAPALGTMLLLTLLSLAGLPPLTGFLPKWFIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 9.05e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.01  E-value: 9.05e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  14 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  93 TSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALL-------FMTSHSLNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 154 LTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAI---IITYNPKLALLnFYL--YALMITAVFLTLNSIKALK-- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIgllAGTLEGIKAVL-FYIfiYALMSLGAFGVLSLLRSYKde 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1818982598 227 ----LSTLMTAWTKAPALGTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNM 275
Cdd:TIGR01770 351 wieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.37e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.98  E-value: 3.37e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   1 MNPQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPTLLTTMAII 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 241 GTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMISLLSLLGLFFYLRLAYCATITLPPHTINHMKQWRTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1818982598 321 TNTLVAITTSLSITLLPISPMILTIV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 2.78e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 386.20  E-value: 2.78e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   1 MNPQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPTLLTTMAII 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPAL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 241 GTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMISLLSLLGLFFYLRLAYCATITLPPHTINHMKQWRTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*
gi 1818982598 321 TNTLVAITTSLSITLLPISPMILTI 345
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 8.81e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 384.93  E-value: 8.81e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   1 MNPQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSlNPTLLTTMAII 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPAL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 241 GTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMISLLSLLGLFFYLRLAYCATITLPPHTINHMKQWRTNKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1818982598 321 TNTL-VAITTSLSITLLPISPMILTIV 346
Cdd:MTH00135  320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 2.81e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 327.57  E-value: 2.81e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   1 MNPQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPTLLTTMAII 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPAL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 241 GTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMISLLSLLGLFFYLRLAYCATITLPPHTINHMKQWR-TNK 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQfENT 320

                         330       340
                  ....*....|....*....|....*.
gi 1818982598 320 PTNTLVAITTSLSITLLPISPMILTI 345
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 4.97e-98

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 293.80  E-value: 4.97e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   1 MNPQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPTLLTTMAII 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPAL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 241 GTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMISLLSLLGLFFYLRLAYCATITLPPHTINHMKQWRTNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*
gi 1818982598 321 TNTLVAITTSLSITLLPISPMILTI 345
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-345 7.57e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 244.84  E-value: 7.57e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   1 MNPQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPTLLTTMAII 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPAL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 241 GTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMISLLSLLGLFFYLRLAYCATITLPPHTINHMKQWRTNKP 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330       340
                  ....*....|....*....|....*.
gi 1818982598 321 TNTLVAITTSLS-ITLLPISPMILTI 345
Cdd:MTH00041  321 ITVYGVILSILSsISILGLLLIPLFL 346
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 4.31e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 178.09  E-value: 4.31e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   1 MNPQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWy 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  81 tgqwdITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMallFMTSHSLNPTLLTTMAII 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPL---ILLSYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPAL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 241 GTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMISLLSLLGLFFYLRLAYCATITLppHTINHMKQWRTNKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNK 310

                         330       340
                  ....*....|....*....|....*
gi 1818982598 321 TNTLVAITTSLSITLLPISPMILTI 345
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 3.16e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 154.66  E-value: 3.16e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   5 AKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  85 DITqlthptscLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALL--FMTSHSLNPTLLtTMAIIST 162
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsnFLDLYWLAYLLC-VISVLSA 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 163 ALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSiKALKLSTLMTAWTKAPALGT 242
Cdd:MTH00144  156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGL 234

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1818982598 243 MLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNM 275
Cdd:MTH00144  235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 1.32e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 153.01  E-value: 1.32e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   7 LIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSmtnawyTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  87 TQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPTLLTTMAIISTALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 167 WMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPALGTMLLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260
                  ....*....|....*....|....*....
gi 1818982598 247 TLLSLAGLPPLTGFLPKWFIIQELTKQNM 275
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-275 7.72e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 132.49  E-value: 7.72e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   8 IFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAwytgqwdIT 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  88 QLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHslNPTLLTTMAIISTALGGW 167
Cdd:MTH00197   75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 168 MGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALMITAVFLTLNSIKALKLSTLMTAWTKAPALGTMLLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260
                  ....*....|....*....|....*...
gi 1818982598 248 LLSLAGLPPLTGFLPKWFIIQELTKQNM 275
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNI 260
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-275 2.30e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.27  E-value: 2.30e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  14 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAwYTGQWDITQLTH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  92 PTS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLF----MTSHSLNP---T 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 153 LLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLAL--LNFYL--YALMITAVFLTLNSIK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1818982598 224 ALKLSTLMTAWTKAPALGTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNM 275
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGL 402
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 7.60e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 99.31  E-value: 7.60e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  91 HPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLIL-STAMKLPPMALLFMTS--HSLNPT---LLTTMAIISTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 165 GGWMGLNQTQTRKILAFSSISHLGWMAIII----TYNPKLALLNFYLYALMITAVFLTLNS-IKALKLSTLMTA----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1818982598 236 KAPALGTMLLLTLLSLAGLPPLTGFLPKWFIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 2.02e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 99.33  E-value: 2.02e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  13 LLLGTTITISSNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  79 WYTGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFmtSHSLNPTLLTTMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 159 IISTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNP----KLALLNFYLYALM---ITAVFLTLNSIKALkLSTLM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMsicVFSIILALNVYKNL-IIEFS 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1818982598 232 TAWTKAPALGTMLLLTLLSLAGLPPLTGFLPKWFII 267
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-279 2.89e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 94.12  E-value: 2.89e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  14 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  93 TS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALL-------FMTSHSLNPTL 153
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvaFGGLSEDWQQV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 154 LTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWM---AIIITYNPKLALLnFYL--YALMITAVFLTLNSI-KALKL 227
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvgLAAGTAEGYSAVL-FYLlaYLFMTLGAFGVISLLrRKGGE 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1818982598 228 STLMTAWT----KAPALGTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAA 279
Cdd:PRK05777  352 AESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 9.05e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.01  E-value: 9.05e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  14 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  93 TSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALL-------FMTSHSLNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 154 LTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAI---IITYNPKLALLnFYL--YALMITAVFLTLNSIKALK-- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIgllAGTLEGIKAVL-FYIfiYALMSLGAFGVLSLLRSYKde 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1818982598 227 ----LSTLMTAWTKAPALGTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNM 275
Cdd:TIGR01770 351 wieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 5.52e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 87.38  E-value: 5.52e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   8 IFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  87 ----TQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPTLLTtmAIIST 162
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 163 ALGGWMGLNQTQTRKILAFSSISHLGW----MAIIITYNPKLALLNFYLYALMITAVF---LTLNSIKALkLSTLMTAWT 235
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSR 337

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1818982598 236 KAPALGTMLLLTLLSLAGLPPLTGFLPKWFII 267
Cdd:MTH00199  338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 1.28e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 80.67  E-value: 1.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   3 PQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASALVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  74 SMTNAWYTGQ----WDITQLTHPTS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLppM 139
Cdd:MTH00198  267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 140 ALLFMTSHSLNPTLLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALM-ITAVFLT 218
Cdd:MTH00198  345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTyLVSALAS 424

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1818982598 219 LNSIKAL------------------------KLSTLMTAWTKAPALGTMLLLTLLSLAGLPPLTGFLPKWFII 267
Cdd:MTH00198  425 FTVICTLeefgtrtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 3.25e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.95  E-value: 3.25e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  13 LLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTH- 91
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  92 ---------PTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAM-KLPPMALL--------FMTSHSLNPTL 153
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVYAILrvltllfgADPALFLGTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 154 LTtMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLY----ALMITAVFLTLNSI----KAL 225
Cdd:COG0651   276 LV-LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIeratGTR 354

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1818982598 226 KLSTLMTAWTKAPALGTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMI 282
Cdd:COG0651   355 DLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-217 1.19e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 71.57  E-value: 1.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   7 LIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASALVL--FSsmtnaWYTGQ 83
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  84 -------WDI------TQLTHPTSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTS 146
Cdd:CHL00049  189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIF 268

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1818982598 147 HSLNPT-------LLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAI-IITYNPKLAllnfylYALMITAVFL 217
Cdd:CHL00049  269 DIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNDG------YASMITYMLF 341
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 5.77e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 66.61  E-value: 5.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  50 PRAIEAATKYFLVQAAASALVLF-SSMTNAWYTGQwdiTQL--------THPTSCLILT-----SAIAMKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 116 PEVLQGSPLTTGLILSTAMKLPPMAL---LFMTSHSLNPT----LLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                  ....
gi 1818982598 189 WMAI 192
Cdd:PRK02504  314 FVMI 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 4.83e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.48  E-value: 4.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  49 HPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQW--DITQLTH-----PTSCLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 119 LQGSPLTTGLILSTAM-KLPPMALL-FM------TSHSLNPTLLTtMAIISTALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlKMGGYGLLrFAlplfpeASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 1818982598 191 AI 192
Cdd:COG1008   315 LL 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 1.49e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.63  E-value: 1.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  50 PRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQW----DITQLTHPTSC-----LILTSAIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 121 GSPLTTGLILS-TAMKLPPMAL------LFMTSHSLNPTLLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAII 193
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311


                  .
gi 1818982598 194 I 194
Cdd:TIGR01972 312 I 312
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-190 1.80e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 52.79  E-value: 1.80e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFS---------SMTNAWYTGQWDITQLTHPTSCL-ILTSA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 102 IAMKLGLVPFHFWFPEVLQGSP--LTTGLILSTAMKLPPMALLFMTSHSLNPTLLTT------MAIISTALGGWMGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQK 309

                         170
                  ....*....|....*..
gi 1818982598 174 QTRKILAFSSISHLGWM 190
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYM 326
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 2.70e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 51.80  E-value: 2.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFS-SMTNAwYTGQWDITQL--------THPTSCLILTSAIA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 104 MKLGLVPFHFWFPEVLQG-SPLTTGLILSTAMKLPPMALL----------FMTSHSLNpTLLTTMAIISTALGGWMGLNQ 172
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIriyftvfggdFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 173 TQTRKILAFSSISHLGWMAIIITYNPKLALLN--FYL--YALMITAVFLTLNSI----KALKLSTLMTAWTKAPALGTML 244
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAAF 372

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1818982598 245 LLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMI 282
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 1.06e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.38  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   2 NPQAKLIFITSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASALVLFSSMTNAWYT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  82 GQWDIT-------QLTHPTSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTA------------MKLPP 138
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQlsklgaygfllvLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 139 MALLFMT-----SHSLNPTLLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKL----ALLNFYLYA 209
Cdd:PRK08668  255 GTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLgfagGLFHVFNHA 334

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1818982598 210 LMITAVFLTLNSI----KALKLSTLMTAWTKAPALGTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQNMAPAATMI 282
Cdd:PRK08668  335 LFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-202 1.64e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.37  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  13 LLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------SALVLFSSMTNAWYTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  87 TQLTHPT----------SCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPT---- 152
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1818982598 153 ----LLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLAL 202
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLAL 324
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 8.85e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 42.63  E-value: 8.85e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1818982598 295 RLAYCATITLPPHTINHMKQWRTNKPTNT-LVAITTSLSITLLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 1.03e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.12  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  50 PRAIEAATKYFLVQAAASALVLFSSMTNAWY----TGQWDITQLTH---PTSCLILT-----SAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 118 VLQGSPLTTGLILSTAM-KLPPMALL-FM------TSHSLNPtLLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGW 189
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILlKMGAYGLLrFSlplfpdASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                  ....*
gi 1818982598 190 MAIII 194
Cdd:PRK05846  316 VTLGI 320
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-211 1.32e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 46.85  E-value: 1.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   8 IFITSLLLgttiTISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTnAWYTGQwdiT 87
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIL-VYANAA---T 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  88 QLTHPTSCLILTSAIAM----------------------KLGLVPFHFWFPEVLQGSP-----LTTGLILSTAMK--LPP 138
Cdd:PRK06458  188 VMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVALYavLRY 267

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1818982598 139 MALLFMTSHSLNP-TLLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLYALM 211
Cdd:PRK06458  268 YILIDAAIGSDFPgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLN 341
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-274 5.72e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.72  E-value: 5.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  96 LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILS-TAMKLPPM-----------ALLFMTSHSLNpTLLTTMAIISTA 163
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYliirivydvfkANFVFTTLPFN-NVFMILAALAIV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 164 LGGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLNFYLY----ALMITAVFLTLNSIK----ALKLSTLMTAWT 235
Cdd:PRK12662  292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1818982598 236 KAPALGTMLLLTLLSLAGLPPLTGFLPKWFIIQELTKQN 274
Cdd:PRK12662  372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSN 410
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 7.03e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.31  E-value: 7.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  55 AATKYFLVQAAASALVLFSSMTNAWYTG-------QWDITQLTHPTSCLILTS---AIAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1818982598 124 LTTGLILSTAMKLPPMALL------FMTSHSLNPTLLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 7.66e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 44.53  E-value: 7.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLILSTAM---------KLPPMallFMTSHSLNPTLLTtMAIISTALGG 166
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 167 WMGLNQTQTRKILAFSSISHLGWMAIII---TYNPKLALLNFYL-YALMITAVFLTLNSIKAL-------KLSTLmtaWT 235
Cdd:PRK12644  283 WRALRQHDLKLILAYGTVSQLGFLTVLVgigTRDAALAGLAMLLaHALFKAALFLVVGIIDHStgtrdirKLSGL---GR 359

                         170       180
                  ....*....|....*....|....*...
gi 1818982598 236 KAPALGTMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  360 RQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-189 1.13e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.79  E-value: 1.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTH--PTSCLILTSAIAMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 111 FHFWFPEVLQGSPLTTGLILSTA-MKLPPMALLFMTSHSLNPTL-LTTMAIISTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVvVKAGVFPLVRCALDVPGLDLiVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282


                  .
gi 1818982598 189 W 189
Cdd:PRK07234  283 F 283
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 1.54e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.48  E-value: 1.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  55 AATKYFLVQAAASALVLFSSMTNAWYTGQ--WDITQLTH---PTSCLILTS-----AIAMKLGLVPFHFWFPEV-----L 119
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAhgeasA 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 120 QGSPLTTGLILstamKLPPMAL------LFMTSHSLNPTLLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAII 193
Cdd:PRK12561  218 PVSMILAGVLL----KMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLG 293


                  .
gi 1818982598 194 I 194
Cdd:PRK12561  294 I 294
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-190 1.56e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.60  E-value: 1.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598   7 LIFITSLLLgttITISSNHWIMaWTGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWD 85
Cdd:COG1009   118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  86 ITQL-----THPTSCLILTSAIAM------KLGLVPFHFWFPEVLQG-SPLTTgLILSTAMK------LPPMALLFmtsh 147
Cdd:COG1009   194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVkagvylLARLSPLF---- 268

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1818982598 148 SLNPTLLTTMAII--STAL-GGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:COG1009   269 ALSPVWLTVVAIIgaITALfAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 2.64e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  92 PTSCLILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLILSTAMK-------LPPMALLFMTSHSLNPTLLTTMAIISTAL 164
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 165 GGWMGLNQTQTRKILAFSSISHLGWMAIIITYNPKLALLN--FYLYALMI--TAVFLTLNSIKAL----KLSTLMTAWTK 236
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1818982598 237 APALGTMLLLTLLSLAGLPPLTGFLPKWFIIQ 268
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12650 PRK12650
DUF4040 family protein;
29-263 6.25e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.57  E-value: 6.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  29 AWtglEINTLAILPLISKSHhPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHPTSCL---ILTSAIAM- 104
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVl 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 105 -------KLGLVPFHFWFPEVLQG-SPLTTGLILSTAMKLPPMALL-FMTSHSLNPT---LLTTMAIISTALGGWMGLNQ 172
Cdd:PRK12650  214 iavaaftKSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLrFSPVFHDVAVwnwLLIIVGMITALMGAVFAVQK 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 173 TQTRKILAFSSISHLGWMAIII----TYNPKLALLNFYLYALMITAVFLTLNSIK----ALKLSTLMTAWTKAPALGTML 244
Cdd:PRK12650  294 TDLKKLTAYSTVSQLGWIVATIgvgtPFALTAAVVHTLAHALFKSSLFMLIGVVDhqagTRDIRRLGSLWRRMPFTFVSV 373

                         250
                  ....*....|....*....
gi 1818982598 245 LLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  374 TIAALSMAAVPPLFGFVSK 392
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 1.41e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.47  E-value: 1.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  55 AATKYFLVQAAASALVLFSSMTNAWYTGQWD------ITQ-LTHPTSCLILTSAI---AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 124 LTTGLILSTAMKLPPMAL------LFMTSHSLNPTLLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYN 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                  ....*.
gi 1818982598 198 PKLALL 203
Cdd:PRK07363  318 TQLSLL 323
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 1.63e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.20  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  48 HHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHPTS---------------CLILTSAiAMKLGLVPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 113 FWFPEVLQGSPLTTGLILSTAMKLPPMALLFMTSHSLNPT-----LLTTMAIISTALGGWMGLNQTQTRKILAFSSISHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314


                  ....*....
gi 1818982598 188 GWMAIIITY 196
Cdd:PRK12649  315 AYLMTMYGY 323
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 4.82e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 4.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 101 AIAMKLGLVPFHFWFPEVLQGSPLTTGLILS-TAMKLPPMALLFMT-------SHSLNPTLLtTMAIISTALGGWMGLNQ 172
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGLVRLSwpilplgAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                          90       100
                  ....*....|....*....|..
gi 1818982598 173 TQTRKILAFSSISHLGWMAIII 194
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITL 339
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 4.84e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.94  E-value: 4.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  55 AATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHPT-----SCLILTSAIAMKLGLVPFHFWFPEVLQGSP-----L 124
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaL 242

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1818982598 125 TTGLILSTAM-KLPPMALLFMTSHSLNPTLLTTMAIISTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK08667  243 MSGVMLKVAVyGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 7.20e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 38.08  E-value: 7.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598  52 AIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHPTSCLILTSAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818982598 116 PEVLQGSPLTTGLILSTAMKlppMALLFMTS-----HSLNPTLLTTMAIISTA---LGGWMGLNQTQTRKILAFSSISHL 187
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMV---AAGVFLVArmypvFEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQL 327


                  ...
gi 1818982598 188 GWM 190
Cdd:PRK07376  328 GYM 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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