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Conserved domains on  [gi|1820099521|gb|QII88489|]
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cytochrome b, partial (mitochondrion) [Tonatia maresi]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-260 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 547.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPH 267
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-260 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 547.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPH 267
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-260 2.07e-104

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 308.26  E-value: 2.07e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   4 LKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGASMF 83
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  84 FICLYMHVGRGLYYGSY-----MfseTWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIW 158
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 159 GGFSVDKATLTRFFAFH-FLLPFLVSALVMVHLLFLHETGSNNPTGI----PSDPDLIPFHPYYTIKDILGIAIMLTILT 233
Cdd:COG1290   177 GGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFA 256

                         250       260
                  ....*....|....*....|....*..
gi 1820099521 234 TLVLFHPDllGDPDNYMPANPLNTPPH 260
Cdd:COG1290   257 LLAFFFPI--NPPPNYGPANPLATPAH 281
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 6.78e-97

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 282.33  E-value: 6.78e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   2 PLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  82 MFFICLYMHVGRGLYYGSYM--FSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1820099521 160 GFSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 1.01e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 261.16  E-value: 1.01e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  11 LVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGASMFFICLYMH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  91 VGRGLYYG--SYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGFSVDKATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1820099521 169 TRFFAFHFLLPFLVSALVMVHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-260 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 547.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPH 267
CYTB MTH00119
cytochrome b; Provisional
 1-260 1.71e-179

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 498.27  E-value: 1.71e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00119    9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00119   89 SMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00119  169 FSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSP 248

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00119  249 NLLGDPENFTPANPLVTPPH 268
CYTB MTH00131
cytochrome b; Provisional
 1-260 3.28e-179

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 497.64  E-value: 3.28e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00131    8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00131   88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00131  168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00131  248 NLLGDPDNFTPANPLVTPPH 267
CYTB MTH00156
cytochrome b; Provisional
 4-260 8.97e-179

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 495.46  E-value: 8.97e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   4 LKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGASMF 83
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  84 FICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGFSV 163
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 164 DKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHPDLL 243
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250
                  ....*....|....*..
gi 1820099521 244 GDPDNYMPANPLNTPPH 260
Cdd:MTH00156  241 GDPENFIPANPLVTPVH 257
CYTB MTH00074
cytochrome b; Provisional
 1-260 1.12e-177

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 493.81  E-value: 1.12e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00074    9 HPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00074   89 SFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00074  169 FSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSP 248

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00074  249 NLLGDPDNFTPANPLVTPPH 268
CYTB MTH00191
cytochrome b; Provisional
 1-260 2.35e-173

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 482.11  E-value: 2.35e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00191    5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00191   85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00191  165 FSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSP 244

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00191  245 NLLGDPENFIPANPLVTPVH 264
CYTB MTH00145
cytochrome b; Provisional
 1-260 6.26e-164

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 458.60  E-value: 6.26e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00145    9 HPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00145   89 SFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00145  169 FSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFP 248

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00145  249 NLLGDPENFIPANPMVTPVH 268
CYTB MTH00034
cytochrome b; Validated
 1-260 7.73e-161

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 451.08  E-value: 7.73e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00034    8 HPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00034   88 SLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00034  168 FSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFP 247

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00034  248 TALNDPENFIPANPLVTPPH 267
CYTB MTH00016
cytochrome b; Validated
 1-260 9.42e-157

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 440.65  E-value: 9.42e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00016    9 HPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00016   89 SFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00016  169 FSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWP 248

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00016  249 NILGDPENFIPANPLVTPTH 268
CYTB MTH00224
cytochrome b; Provisional
 1-260 1.39e-137

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 391.98  E-value: 1.39e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00224    9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00224   89 SMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00224  169 FAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEP 248

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00224  249 NLFTDPENFLMANPLVTPIH 268
CYTB MTH00022
cytochrome b; Validated
 1-260 5.65e-136

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 387.90  E-value: 5.65e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   1 HPLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGA 80
Cdd:MTH00022    7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGG 160
Cdd:MTH00022   87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 161 FSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHP 240
Cdd:MTH00022  167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                         250       260
                  ....*....|....*....|
gi 1820099521 241 DLLGDPDNYMPANPLNTPPH 260
Cdd:MTH00022  247 NLLGDPENFIQANSLVTPVH 266
CYTB MTH00053
cytochrome b; Provisional
 2-260 1.98e-128

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 369.03  E-value: 1.98e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   2 PLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGAS 81
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  82 MFFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGF 161
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 162 SVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHPD 241
Cdd:MTH00053  170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                         250
                  ....*....|....*....
gi 1820099521 242 LLGDPDNYMPANPLNTPPH 260
Cdd:MTH00053  250 SLGDAENFKQANPLVTPVH 268
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-260 2.07e-104

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 308.26  E-value: 2.07e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   4 LKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGASMF 83
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  84 FICLYMHVGRGLYYGSY-----MfseTWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIW 158
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 159 GGFSVDKATLTRFFAFH-FLLPFLVSALVMVHLLFLHETGSNNPTGI----PSDPDLIPFHPYYTIKDILGIAIMLTILT 233
Cdd:COG1290   177 GGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFA 256

                         250       260
                  ....*....|....*....|....*..
gi 1820099521 234 TLVLFHPDllGDPDNYMPANPLNTPPH 260
Cdd:COG1290   257 LLAFFFPI--NPPPNYGPANPLATPAH 281
CYTB MTH00033
cytochrome b; Provisional
 9-260 4.13e-102

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 302.24  E-value: 4.13e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   9 NSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGASMFFICLY 88
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  89 MHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGFSVDKATL 168
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 169 TRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILtTLVLFHP---DLLGD 245
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVF-VIIGIEPrieTLLQD 251

                         250
                  ....*....|....*
gi 1820099521 246 PDNYMPANPLNTPPH 260
Cdd:MTH00033  252 PENFIQANPLVTPVH 266
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 6.78e-97

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 282.33  E-value: 6.78e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   2 PLLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  82 MFFICLYMHVGRGLYYGSYM--FSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1820099521 160 GFSVDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00086
cytochrome b; Provisional
 5-260 7.59e-95

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 282.60  E-value: 7.59e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   5 KIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGASMFF 84
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  85 ICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGFSVD 164
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 165 KATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIaIMLTILTTLVLFHPDLLG 244
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLG 239

                         250
                  ....*....|....*.
gi 1820099521 245 DPDNYMPANPLNTPPH 260
Cdd:MTH00086  240 DPEMFIEADPMMSPVH 255
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 1.01e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 261.16  E-value: 1.01e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  11 LVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGASMFFICLYMH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  91 VGRGLYYG--SYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGFSVDKATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1820099521 169 TRFFAFHFLLPFLVSALVMVHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 3-258 1.69e-72

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 225.63  E-value: 1.69e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521   3 LLKIINNSLVDLPTPSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGASM 82
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  83 FFICLYMHVGRGLYYGSYMFSETWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGFS 162
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 163 VDKATLTRFFAFHFLLPFLVSALVMVHLLFLHETGSNNPTGIPSD-PDLIPFHPYYTIKDILGIAIMLTILTTLVLFHPD 241
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250
                  ....*....|....*..
gi 1820099521 242 LLGDPDNYMPANPLNTP 258
Cdd:MTH00046  241 LVLDIEAYLEADPLVTP 257
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-246 3.06e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 154.71  E-value: 3.06e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  81 SMFFICLYMHVGRGLYYGSYMFSE--TWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIW 158
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 159 GGFSVDKATLTRFFAFHF-LLPFLVSALVMVHLLFLHETGSNNPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVL 237
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1820099521 238 FHPDLLGDP 246
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 26-201 7.51e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 134.84  E-value: 7.51e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  26 FGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGASMFFICLYMHVGRGLYYGSYMFSE- 104
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521 105 -TWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGFSVDKATLTRFFAFH-FLLPFLV 182
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1820099521 183 SALVMVHLLFLHETGSNNP 201
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 17-201 3.53e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 117.51  E-value: 3.53e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  17 PSNLSSWWNFGSLLGVCLAVQILTGLFLAMHYTSDTSTAFNSVTHICRDVNYGWMLRYTHANGASMFFICLYMHVGRGLY 96
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820099521  97 YGSYMFSE--TWNVGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGFSVDKATLTRFFAF 174
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1820099521 175 H-FLLPFLVSALVMVHLLFLHETGSNNP 201
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 200-260 1.08e-15

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 71.91  E-value: 1.08e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1820099521 200 NPTGIPSDPDLIPFHPYYTIKDILGIAIMLTILTTLVLFHPDLLGDPDNYMPANPLNTPPH 260
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLH 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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