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Conserved domains on  [gi|1825636441|gb|QIQ69197|]
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BDNF, partial [Pteropus rufus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NGF super family cl02481
Nerve growth factor family;
119-172 7.37e-26

Nerve growth factor family;


The actual alignment was detected with superfamily member smart00140:

Pssm-ID: 470588  Cd Length: 106  Bit Score: 94.86  E-value: 7.37e-26
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1825636441  119 ARRGELSVCDSISEWVTaaDKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKC 172
Cdd:smart00140   1 SHRGEYSVCDSISVWVT--DKTTATDISGNEVTVLGEVPVNNGPLKQYFYETRC 52
 
Name Accession Description Interval E-value
NGF smart00140
Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of ...
 119-172 7.37e-26

Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of the sympathetic and sensory nervous systems.


Pssm-ID: 128445  Cd Length: 106  Bit Score: 94.86  E-value: 7.37e-26
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1825636441  119 ARRGELSVCDSISEWVTaaDKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKC 172
Cdd:smart00140   1 SHRGEYSVCDSISVWVT--DKTTATDISGNEVTVLGEVPVNNGPLKQYFYETRC 52
NGF pfam00243
Nerve growth factor family;
120-172 4.44e-24

Nerve growth factor family;


Pssm-ID: 459728  Cd Length: 112  Bit Score: 90.48  E-value: 4.44e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1825636441 120 RRGELSVCDSISEWVTaaDKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKC 172
Cdd:pfam00243   2 HRGEYSVCDSVSTWVT--NKTTAVDIRGNEVTVLGEVKTNNGVLKQYFFETKC 52
 
Name Accession Description Interval E-value
NGF smart00140
Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of ...
 119-172 7.37e-26

Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of the sympathetic and sensory nervous systems.


Pssm-ID: 128445  Cd Length: 106  Bit Score: 94.86  E-value: 7.37e-26
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1825636441  119 ARRGELSVCDSISEWVTaaDKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKC 172
Cdd:smart00140   1 SHRGEYSVCDSISVWVT--DKTTATDISGNEVTVLGEVPVNNGPLKQYFYETRC 52
NGF pfam00243
Nerve growth factor family;
120-172 4.44e-24

Nerve growth factor family;


Pssm-ID: 459728  Cd Length: 112  Bit Score: 90.48  E-value: 4.44e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1825636441 120 RRGELSVCDSISEWVTaaDKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKC 172
Cdd:pfam00243   2 HRGEYSVCDSVSTWVT--NKTTAVDIRGNEVTVLGEVKTNNGVLKQYFFETKC 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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