NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1834999320|gb|QJE36542|]
View 

hypothetical chloroplast RF1 (chloroplast) [Malva parviflora]

Protein Classification

TIC214/Ycf1 family protein( domain architecture ID 11414143)

TIC214/ycf1 family protein is a component of the chloroplast inner membrane protein translocon and forms a 1-MD complex together with Tic100, Tic56, and Tic20-I

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1899 0e+00

Ycf1; Provisional


:

Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2896.73  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320    8 PGNLISLCMKIINSAVMVGLYYGFLTTLSIGPSYIFLLRARVM---EEGTEKKVSATTGFIAGQFMMFISIYYVPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320   85 GRPHTITVLALPYLLFHFFWNNHKDFFDYGRTTRNSMRNFSIQCVFLNNLIIQLFNHFLLPSSMLSRLVNIYMFRCNNNM 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  165 LFVTSSFVGWLIGHILFMKWVGLVLAWIQQNNFLRSNVLIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTK 244
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  245 KLKGISETEEVGEGEEERNIEIETISEGGEDKQEQEVSTEENPSSSFFSEERTGPSKIDETEklgatgkkkkkikgelhf 324
Cdd:CHL00204   241 KLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETE------------------ 302

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  325 pfketyyknrpvyetsyldgnqesSKLEILKKKEDKYLLWFEKPLVTLLFDSKRWNRPLRYIKNDRFENAIKNEMSQYFF 404
Cdd:CHL00204   303 ------------------------EIRVNGKEKIKKDLFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFF 358

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  405 YTCQSNGKEKISFTYPPSLASFGEMIQKKIYFFTPEKGFSDELYTDWSFSNELKRRNLSKEFIKRVESLDKESFDLSILK 484
Cdd:CHL00204   359 YTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILE 438

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  485 KRTRFSNNETKKEYLPKIYDPFLHGPYRGRIKKWVSPLSINQTSKKKTTDPFWINKIHAILL-TTDYHEIEQTLDTFNIK 563
Cdd:CHL00204   439 KRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIINETSIKNNIEGVWINKIHGILLnNTDYQEFEQKIDTFNKK 518

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  564 SLSKE---------------------KELSLLTltEDEQGNIDSKDRVKILKFLFDIVITNPNNQTIRKKSIGIKEISKK 622
Cdd:CHL00204   519 SLSTEinesltlinkfgaepksslnlKGLSLFS--EPEQEKINSEEEIKIFKFLFDAVITDPNDQTIIKKSIGIKEISKK 596

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  623 VPRWSYKLIDDLEQQEGENEENVTAEHEIRSRKSKRVVIFTNNQANADTYTNTKDANDPDQTNEVALIRYSQQSDFRRDI 702
Cdd:CHL00204   597 VPRWSYKLIDELEQLEGENEENVPSDHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGI 676

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  703 IKGSMRAQRRKTITLELFQANVHSPLFLDRVDKPLFFSFDISGPLKLISRNWICKNvdKESKISDYIEKKIEKKDED--- 779
Cdd:CHL00204   677 IKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDISGLMKKIFRNWNGKD--AEFKISDSVEEKTKKKKKKekk 754

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  780 KREKYKREEKMRIEIAEAWDSILPAQVIRGSVLITQSILRKYIILPSLIIAKNIARMLLFQFPEWSEDLKDWNREMHVKC 859
Cdd:CHL00204   755 KEEEYKREEKARIEIAEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKC 834

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  860 TYNGVQLSETEFPKNWLTDGIQIKILFPFCLKPWHRFKQQPSHKDPMKmkKTKGQKNDFCFLTVWGMETELPFGSPRnyp 939
Cdd:CHL00204   835 TYNGVQLSETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRSSHKDRMK--KKKKKKNDFCFLTVWGMETELPFGSPR--- 909

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  940 rKRRSFFEPILKELKKKIKKLKTKCFIALTILKEKTTFFRKVSKETKKWITQSILFLKGIVKELSKINPIPFFGLREISE 1019
Cdd:CHL00204   910 -KRPSFFEPIFKELKKKIRKFKKKYFLVLKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRNPILLFGLREIYE 988

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1020 LDETK--KDSIISNEMIHESSLQIQSTGWTNYSLTEKKIKDLTTRTNTIKNQIEKILiiKDKKNefITQEINISSNKISY 1097
Cdd:CHL00204   989 LNETKkeKDSIISNQMIHESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKIT--KEKKK--ITNTINISPNKTSY 1064

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1098 PDKILESSKKKLQILKRRNIRLIRKFYFFIKFFNEKIYIDILLYIINFPRTNTQLFLESTKKMIEKFIHNNEANQ---DK 1174
Cdd:CHL00204  1065 DSKIIESSKKIWQILKRRNTRLIRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKekiNK 1144

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1175 TTKNTIHFISTIKNSLSSLSnvsIRNKNEKAFCDLFSLSQAYVFYKLSQTQAISFYKLKPILQYHGTSRFLKNEIKDYFE 1254
Cdd:CHL00204  1145 KKQNTIHFISTIKKSLYNIS---NKNKNSKIFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYFE 1221

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1255 EQGVSHSRLRHdyglrqKIFLHSGINEWKNWLRSRYQYNLFQSRWLRLVPRQWRNRVNQHYLAQNKDLTKWDSYEKERLT 1334
Cdd:CHL00204  1222 AQGIFHSKLKH------KNLLNSGMNQWKNWLRSHYQYDLSQIRWSRLVPQKWRNRVNQDRMVQNKDLNKWDSYEKDRLI 1295

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1335 HYEKKNDFQANSLLNQeykltqeqklkKSNLKKHYGYDFLSYKSINYQDKRdpyaygspfqVNINKREEISYNYNMDKRK 1414
Cdd:CHL00204  1296 HYKKQNDFEANSLLNQ-----------KDNFKKDYRYDLLSYKSINYEDKK----------FQVNKNQEISYNYNTRKVN 1354

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1415 FFDTLRDIPIHNDLGEDNILDaMGNFSHRKFLNWGILHFCLRNKADIEYWVDTSTKSNKNIKAGVNNYEIIDKTDlfyft 1494
Cdd:CHL00204  1355 LFDMPEGIAINNYLGKGDILD-IEKNPDRKYLDWRILNFSLRKKVDIESWVDTDSKSKKNTKTGVNNYQIIDKID----- 1428

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1495 iFQDHESNPSSKKGSPFDWMGMNEEILSRPISNLELWFFPEFVLLYNAYKVKPWIIPIKLLLLNFNVNGNINKNIIENKK 1574
Cdd:CHL00204  1429 -HQDFENNQANKKKNFFDWMGMNEEILNRPISNLEFWFFPEFVLLYNTYKIKPWIIPIKLLLLNLNGNENVNKKINQKKK 1507

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1575 RdpLIAPNAKKIIGLENRNQEEKEPIGEGDLVSDAQKQGNLKSVLSNQEKDVEEDYGKSDIKKRRKKKQYKSNTEAELDF 1654
Cdd:CHL00204  1508 G--FIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAELDF 1585

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1655 FLKRYLRFQLRWDDSLNQRIINNIKVYCLLLRLINPNEIVISSIQRGEMNLDILMIQKDLTLRELMKKGILIIDPVRLSV 1734
Cdd:CHL00204  1586 FLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINPREIAISSIQRGEMSLDIMMIQKNLTLTELMKKGILIIEPVRLSV 1665

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1735 KNDGQFILYQTISISLVHKNKHQINQRYQEKNYIDKKNFDESIARHQKMTENKDKNHYDLFVPENILSPNHRRELRIRIS 1814
Cdd:CHL00204  1666 KNDGQFIIYQTIGISLVHKNKHQINQRYREKKYVDKKNFDESITKHQTITENRDKNHYDLLVPENILSPKRRRELRILIC 1745

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1815 FNSRDKNGMHRNPVFLN--NVKNCGQVLTKNKDLDGEKKKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMVRIHM 1892
Cdd:CHL00204  1746 FNSKNKNAVDRNSVFCNekNVKNCGQVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHM 1825


                   ....*..
gi 1834999320 1893 YPRLKIR 1899
Cdd:CHL00204  1826 YPRLKIR 1832
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1899 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2896.73  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320    8 PGNLISLCMKIINSAVMVGLYYGFLTTLSIGPSYIFLLRARVM---EEGTEKKVSATTGFIAGQFMMFISIYYVPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320   85 GRPHTITVLALPYLLFHFFWNNHKDFFDYGRTTRNSMRNFSIQCVFLNNLIIQLFNHFLLPSSMLSRLVNIYMFRCNNNM 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  165 LFVTSSFVGWLIGHILFMKWVGLVLAWIQQNNFLRSNVLIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTK 244
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  245 KLKGISETEEVGEGEEERNIEIETISEGGEDKQEQEVSTEENPSSSFFSEERTGPSKIDETEklgatgkkkkkikgelhf 324
Cdd:CHL00204   241 KLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETE------------------ 302

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  325 pfketyyknrpvyetsyldgnqesSKLEILKKKEDKYLLWFEKPLVTLLFDSKRWNRPLRYIKNDRFENAIKNEMSQYFF 404
Cdd:CHL00204   303 ------------------------EIRVNGKEKIKKDLFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFF 358

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  405 YTCQSNGKEKISFTYPPSLASFGEMIQKKIYFFTPEKGFSDELYTDWSFSNELKRRNLSKEFIKRVESLDKESFDLSILK 484
Cdd:CHL00204   359 YTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILE 438

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  485 KRTRFSNNETKKEYLPKIYDPFLHGPYRGRIKKWVSPLSINQTSKKKTTDPFWINKIHAILL-TTDYHEIEQTLDTFNIK 563
Cdd:CHL00204   439 KRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIINETSIKNNIEGVWINKIHGILLnNTDYQEFEQKIDTFNKK 518

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  564 SLSKE---------------------KELSLLTltEDEQGNIDSKDRVKILKFLFDIVITNPNNQTIRKKSIGIKEISKK 622
Cdd:CHL00204   519 SLSTEinesltlinkfgaepksslnlKGLSLFS--EPEQEKINSEEEIKIFKFLFDAVITDPNDQTIIKKSIGIKEISKK 596

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  623 VPRWSYKLIDDLEQQEGENEENVTAEHEIRSRKSKRVVIFTNNQANADTYTNTKDANDPDQTNEVALIRYSQQSDFRRDI 702
Cdd:CHL00204   597 VPRWSYKLIDELEQLEGENEENVPSDHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGI 676

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  703 IKGSMRAQRRKTITLELFQANVHSPLFLDRVDKPLFFSFDISGPLKLISRNWICKNvdKESKISDYIEKKIEKKDED--- 779
Cdd:CHL00204   677 IKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDISGLMKKIFRNWNGKD--AEFKISDSVEEKTKKKKKKekk 754

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  780 KREKYKREEKMRIEIAEAWDSILPAQVIRGSVLITQSILRKYIILPSLIIAKNIARMLLFQFPEWSEDLKDWNREMHVKC 859
Cdd:CHL00204   755 KEEEYKREEKARIEIAEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKC 834

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  860 TYNGVQLSETEFPKNWLTDGIQIKILFPFCLKPWHRFKQQPSHKDPMKmkKTKGQKNDFCFLTVWGMETELPFGSPRnyp 939
Cdd:CHL00204   835 TYNGVQLSETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRSSHKDRMK--KKKKKKNDFCFLTVWGMETELPFGSPR--- 909

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  940 rKRRSFFEPILKELKKKIKKLKTKCFIALTILKEKTTFFRKVSKETKKWITQSILFLKGIVKELSKINPIPFFGLREISE 1019
Cdd:CHL00204   910 -KRPSFFEPIFKELKKKIRKFKKKYFLVLKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRNPILLFGLREIYE 988

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1020 LDETK--KDSIISNEMIHESSLQIQSTGWTNYSLTEKKIKDLTTRTNTIKNQIEKILiiKDKKNefITQEINISSNKISY 1097
Cdd:CHL00204   989 LNETKkeKDSIISNQMIHESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKIT--KEKKK--ITNTINISPNKTSY 1064

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1098 PDKILESSKKKLQILKRRNIRLIRKFYFFIKFFNEKIYIDILLYIINFPRTNTQLFLESTKKMIEKFIHNNEANQ---DK 1174
Cdd:CHL00204  1065 DSKIIESSKKIWQILKRRNTRLIRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKekiNK 1144

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1175 TTKNTIHFISTIKNSLSSLSnvsIRNKNEKAFCDLFSLSQAYVFYKLSQTQAISFYKLKPILQYHGTSRFLKNEIKDYFE 1254
Cdd:CHL00204  1145 KKQNTIHFISTIKKSLYNIS---NKNKNSKIFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYFE 1221

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1255 EQGVSHSRLRHdyglrqKIFLHSGINEWKNWLRSRYQYNLFQSRWLRLVPRQWRNRVNQHYLAQNKDLTKWDSYEKERLT 1334
Cdd:CHL00204  1222 AQGIFHSKLKH------KNLLNSGMNQWKNWLRSHYQYDLSQIRWSRLVPQKWRNRVNQDRMVQNKDLNKWDSYEKDRLI 1295

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1335 HYEKKNDFQANSLLNQeykltqeqklkKSNLKKHYGYDFLSYKSINYQDKRdpyaygspfqVNINKREEISYNYNMDKRK 1414
Cdd:CHL00204  1296 HYKKQNDFEANSLLNQ-----------KDNFKKDYRYDLLSYKSINYEDKK----------FQVNKNQEISYNYNTRKVN 1354

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1415 FFDTLRDIPIHNDLGEDNILDaMGNFSHRKFLNWGILHFCLRNKADIEYWVDTSTKSNKNIKAGVNNYEIIDKTDlfyft 1494
Cdd:CHL00204  1355 LFDMPEGIAINNYLGKGDILD-IEKNPDRKYLDWRILNFSLRKKVDIESWVDTDSKSKKNTKTGVNNYQIIDKID----- 1428

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1495 iFQDHESNPSSKKGSPFDWMGMNEEILSRPISNLELWFFPEFVLLYNAYKVKPWIIPIKLLLLNFNVNGNINKNIIENKK 1574
Cdd:CHL00204  1429 -HQDFENNQANKKKNFFDWMGMNEEILNRPISNLEFWFFPEFVLLYNTYKIKPWIIPIKLLLLNLNGNENVNKKINQKKK 1507

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1575 RdpLIAPNAKKIIGLENRNQEEKEPIGEGDLVSDAQKQGNLKSVLSNQEKDVEEDYGKSDIKKRRKKKQYKSNTEAELDF 1654
Cdd:CHL00204  1508 G--FIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAELDF 1585

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1655 FLKRYLRFQLRWDDSLNQRIINNIKVYCLLLRLINPNEIVISSIQRGEMNLDILMIQKDLTLRELMKKGILIIDPVRLSV 1734
Cdd:CHL00204  1586 FLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINPREIAISSIQRGEMSLDIMMIQKNLTLTELMKKGILIIEPVRLSV 1665

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1735 KNDGQFILYQTISISLVHKNKHQINQRYQEKNYIDKKNFDESIARHQKMTENKDKNHYDLFVPENILSPNHRRELRIRIS 1814
Cdd:CHL00204  1666 KNDGQFIIYQTIGISLVHKNKHQINQRYREKKYVDKKNFDESITKHQTITENRDKNHYDLLVPENILSPKRRRELRILIC 1745

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1815 FNSRDKNGMHRNPVFLN--NVKNCGQVLTKNKDLDGEKKKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMVRIHM 1892
Cdd:CHL00204  1746 FNSKNKNAVDRNSVFCNekNVKNCGQVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHM 1825


                   ....*..
gi 1834999320 1893 YPRLKIR 1899
Cdd:CHL00204  1826 YPRLKIR 1832
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 23-949 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 1426.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320   23 VMVGLYYGFLTTLSIGPSYIFLLRARVM---EEGTEKKVSATTGFIAGQFMMFISIYYVPLHLALGRPHTITVLALPYLL 99
Cdd:pfam05758    2 VVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  100 FHFFWNNHKDFFDYGRTTRNSMRNFSIQCVFLNNLIIQLFNHFLLPSSMLSRLVNIYMFRCNNNMLFVTSSFVGWLIGHI 179
Cdd:pfam05758   82 FHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHI 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  180 LFMKWVGLVLAWIQQNNFLRSNVLIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKGISETEEVGEGE 259
Cdd:pfam05758  162 LFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKETSETEERYESE 241

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  260 EERNIEIETISEGGEDKQEQEVSTEENPSSSFFSEERTGPSKIDETEklGATGKKKKKIKGELHFPFKETYYKNRPVYET 339
Cdd:pfam05758  242 EETDVEIETTSETKGTKQEQERSTEEDPSPSLFSEEGEDLDKIDETE--EIRVNGKDKIKDEFHFHFRETCYKNSPIYET 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  340 SYLDGNQESSKLEILKKKED-KYLLWFEKPLVTLLFDSKRWNRPLRYIKNDRFENAIKNEMSQYFFYTCQSNGKEKISFT 418
Cdd:pfam05758  320 SYLDGNQENSKLEILKEKKKnKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERISFT 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  419 YPPSLASFGEMIQKKIYFFTPEKGFSDELYTDWSFSNELKRRNLSKEFIKRVESLDKESFDLSILKKRTRFSNNETKKEY 498
Cdd:pfam05758  400 YPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETKKEY 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  499 LPKIYDPFLHGPYRGRIKKWVSPLSINQTSKKKTTDPFWINKIHAILLTTDYHEIEQTLDTFNIKSLSKE---------- 568
Cdd:pfam05758  480 LPKIYDPFLNGPYRGRIKKVFSPSIINKTSRKNSLEGVWINKIHGILLSSNYPEFEQKINIFDRKSLSTEidyflnline 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  569 -----------KELSLltLTEDEQGNIDSKDRVKILKFLFDIVITNPNNQTIRKKSIGIKEISKKVPRWSYKLIDDLEQQ 637
Cdd:pfam05758  560 fskksvsslnfKGLSL--FPEQEQVKINSEEEKKILKFLFDAVRTDSNEKTIRKKSIGIKEINKKVPRWSYKLIDELEQL 637

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  638 EGENEENVTAEHEIRSRKSKRVVIFTNNQANADTYTNTKDANDPDQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKTITL 717
Cdd:pfam05758  638 EGENEENVAEDYQIRSRKAKRVVIFTDNQKNYDTYNNTKDTDNSEQKNEVALIRYSQQSDFRRDIIKGSMRAQRRKTVIW 717

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  718 ELFQANVHSPLFLDRVDKPLFFSFDISGPLKLISRNWICKNvdKESKISDYIEKKIEKKDED---KREKYKREEKMRIEI 794
Cdd:pfam05758  718 ELFQANVHSPLFLDRIDKPLFFSFDIFGLIKIIFKNWMRKK--EEFKISSYTEEKTKESSKKeedKKEDNKREERARIEI 795

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  795 AEAWDSILPAQVIRGSVLITQSILRKYIILPSLIIAKNIARMLLFQFPEWSEDLKDWNREMHVKCTYNGVQLSETEFPKN 874
Cdd:pfam05758  796 AEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFPKN 875

                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1834999320  875 WLTDGIQIKILFPFCLKPWHRFKQQPSHKDPMkmkKTKGQKNDFCFLTVWGMETELPFGSprnyPRKRRSFFEPI 949
Cdd:pfam05758  876 WLTDGIQIKILFPFRLKPWHKSKLRSSEKDLM---KKKVQKNDFCFLTVWGMETELPFGS----PRKRPSFFEPI 943
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1899 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2896.73  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320    8 PGNLISLCMKIINSAVMVGLYYGFLTTLSIGPSYIFLLRARVM---EEGTEKKVSATTGFIAGQFMMFISIYYVPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320   85 GRPHTITVLALPYLLFHFFWNNHKDFFDYGRTTRNSMRNFSIQCVFLNNLIIQLFNHFLLPSSMLSRLVNIYMFRCNNNM 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  165 LFVTSSFVGWLIGHILFMKWVGLVLAWIQQNNFLRSNVLIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTK 244
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  245 KLKGISETEEVGEGEEERNIEIETISEGGEDKQEQEVSTEENPSSSFFSEERTGPSKIDETEklgatgkkkkkikgelhf 324
Cdd:CHL00204   241 KLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETE------------------ 302

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  325 pfketyyknrpvyetsyldgnqesSKLEILKKKEDKYLLWFEKPLVTLLFDSKRWNRPLRYIKNDRFENAIKNEMSQYFF 404
Cdd:CHL00204   303 ------------------------EIRVNGKEKIKKDLFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFF 358

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  405 YTCQSNGKEKISFTYPPSLASFGEMIQKKIYFFTPEKGFSDELYTDWSFSNELKRRNLSKEFIKRVESLDKESFDLSILK 484
Cdd:CHL00204   359 YTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILE 438

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  485 KRTRFSNNETKKEYLPKIYDPFLHGPYRGRIKKWVSPLSINQTSKKKTTDPFWINKIHAILL-TTDYHEIEQTLDTFNIK 563
Cdd:CHL00204   439 KRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIINETSIKNNIEGVWINKIHGILLnNTDYQEFEQKIDTFNKK 518

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  564 SLSKE---------------------KELSLLTltEDEQGNIDSKDRVKILKFLFDIVITNPNNQTIRKKSIGIKEISKK 622
Cdd:CHL00204   519 SLSTEinesltlinkfgaepksslnlKGLSLFS--EPEQEKINSEEEIKIFKFLFDAVITDPNDQTIIKKSIGIKEISKK 596

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  623 VPRWSYKLIDDLEQQEGENEENVTAEHEIRSRKSKRVVIFTNNQANADTYTNTKDANDPDQTNEVALIRYSQQSDFRRDI 702
Cdd:CHL00204   597 VPRWSYKLIDELEQLEGENEENVPSDHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGI 676

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  703 IKGSMRAQRRKTITLELFQANVHSPLFLDRVDKPLFFSFDISGPLKLISRNWICKNvdKESKISDYIEKKIEKKDED--- 779
Cdd:CHL00204   677 IKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDISGLMKKIFRNWNGKD--AEFKISDSVEEKTKKKKKKekk 754

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  780 KREKYKREEKMRIEIAEAWDSILPAQVIRGSVLITQSILRKYIILPSLIIAKNIARMLLFQFPEWSEDLKDWNREMHVKC 859
Cdd:CHL00204   755 KEEEYKREEKARIEIAEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKC 834

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  860 TYNGVQLSETEFPKNWLTDGIQIKILFPFCLKPWHRFKQQPSHKDPMKmkKTKGQKNDFCFLTVWGMETELPFGSPRnyp 939
Cdd:CHL00204   835 TYNGVQLSETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRSSHKDRMK--KKKKKKNDFCFLTVWGMETELPFGSPR--- 909

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  940 rKRRSFFEPILKELKKKIKKLKTKCFIALTILKEKTTFFRKVSKETKKWITQSILFLKGIVKELSKINPIPFFGLREISE 1019
Cdd:CHL00204   910 -KRPSFFEPIFKELKKKIRKFKKKYFLVLKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRNPILLFGLREIYE 988

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1020 LDETK--KDSIISNEMIHESSLQIQSTGWTNYSLTEKKIKDLTTRTNTIKNQIEKILiiKDKKNefITQEINISSNKISY 1097
Cdd:CHL00204   989 LNETKkeKDSIISNQMIHESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKIT--KEKKK--ITNTINISPNKTSY 1064

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1098 PDKILESSKKKLQILKRRNIRLIRKFYFFIKFFNEKIYIDILLYIINFPRTNTQLFLESTKKMIEKFIHNNEANQ---DK 1174
Cdd:CHL00204  1065 DSKIIESSKKIWQILKRRNTRLIRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKekiNK 1144

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1175 TTKNTIHFISTIKNSLSSLSnvsIRNKNEKAFCDLFSLSQAYVFYKLSQTQAISFYKLKPILQYHGTSRFLKNEIKDYFE 1254
Cdd:CHL00204  1145 KKQNTIHFISTIKKSLYNIS---NKNKNSKIFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYFE 1221

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1255 EQGVSHSRLRHdyglrqKIFLHSGINEWKNWLRSRYQYNLFQSRWLRLVPRQWRNRVNQHYLAQNKDLTKWDSYEKERLT 1334
Cdd:CHL00204  1222 AQGIFHSKLKH------KNLLNSGMNQWKNWLRSHYQYDLSQIRWSRLVPQKWRNRVNQDRMVQNKDLNKWDSYEKDRLI 1295

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1335 HYEKKNDFQANSLLNQeykltqeqklkKSNLKKHYGYDFLSYKSINYQDKRdpyaygspfqVNINKREEISYNYNMDKRK 1414
Cdd:CHL00204  1296 HYKKQNDFEANSLLNQ-----------KDNFKKDYRYDLLSYKSINYEDKK----------FQVNKNQEISYNYNTRKVN 1354

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1415 FFDTLRDIPIHNDLGEDNILDaMGNFSHRKFLNWGILHFCLRNKADIEYWVDTSTKSNKNIKAGVNNYEIIDKTDlfyft 1494
Cdd:CHL00204  1355 LFDMPEGIAINNYLGKGDILD-IEKNPDRKYLDWRILNFSLRKKVDIESWVDTDSKSKKNTKTGVNNYQIIDKID----- 1428

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1495 iFQDHESNPSSKKGSPFDWMGMNEEILSRPISNLELWFFPEFVLLYNAYKVKPWIIPIKLLLLNFNVNGNINKNIIENKK 1574
Cdd:CHL00204  1429 -HQDFENNQANKKKNFFDWMGMNEEILNRPISNLEFWFFPEFVLLYNTYKIKPWIIPIKLLLLNLNGNENVNKKINQKKK 1507

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1575 RdpLIAPNAKKIIGLENRNQEEKEPIGEGDLVSDAQKQGNLKSVLSNQEKDVEEDYGKSDIKKRRKKKQYKSNTEAELDF 1654
Cdd:CHL00204  1508 G--FIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAELDF 1585

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1655 FLKRYLRFQLRWDDSLNQRIINNIKVYCLLLRLINPNEIVISSIQRGEMNLDILMIQKDLTLRELMKKGILIIDPVRLSV 1734
Cdd:CHL00204  1586 FLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINPREIAISSIQRGEMSLDIMMIQKNLTLTELMKKGILIIEPVRLSV 1665

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1735 KNDGQFILYQTISISLVHKNKHQINQRYQEKNYIDKKNFDESIARHQKMTENKDKNHYDLFVPENILSPNHRRELRIRIS 1814
Cdd:CHL00204  1666 KNDGQFIIYQTIGISLVHKNKHQINQRYREKKYVDKKNFDESITKHQTITENRDKNHYDLLVPENILSPKRRRELRILIC 1745

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320 1815 FNSRDKNGMHRNPVFLN--NVKNCGQVLTKNKDLDGEKKKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMVRIHM 1892
Cdd:CHL00204  1746 FNSKNKNAVDRNSVFCNekNVKNCGQVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHM 1825


                   ....*..
gi 1834999320 1893 YPRLKIR 1899
Cdd:CHL00204  1826 YPRLKIR 1832
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 23-949 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 1426.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320   23 VMVGLYYGFLTTLSIGPSYIFLLRARVM---EEGTEKKVSATTGFIAGQFMMFISIYYVPLHLALGRPHTITVLALPYLL 99
Cdd:pfam05758    2 VVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  100 FHFFWNNHKDFFDYGRTTRNSMRNFSIQCVFLNNLIIQLFNHFLLPSSMLSRLVNIYMFRCNNNMLFVTSSFVGWLIGHI 179
Cdd:pfam05758   82 FHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHI 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  180 LFMKWVGLVLAWIQQNNFLRSNVLIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKGISETEEVGEGE 259
Cdd:pfam05758  162 LFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKETSETEERYESE 241

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  260 EERNIEIETISEGGEDKQEQEVSTEENPSSSFFSEERTGPSKIDETEklGATGKKKKKIKGELHFPFKETYYKNRPVYET 339
Cdd:pfam05758  242 EETDVEIETTSETKGTKQEQERSTEEDPSPSLFSEEGEDLDKIDETE--EIRVNGKDKIKDEFHFHFRETCYKNSPIYET 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  340 SYLDGNQESSKLEILKKKED-KYLLWFEKPLVTLLFDSKRWNRPLRYIKNDRFENAIKNEMSQYFFYTCQSNGKEKISFT 418
Cdd:pfam05758  320 SYLDGNQENSKLEILKEKKKnKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERISFT 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  419 YPPSLASFGEMIQKKIYFFTPEKGFSDELYTDWSFSNELKRRNLSKEFIKRVESLDKESFDLSILKKRTRFSNNETKKEY 498
Cdd:pfam05758  400 YPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETKKEY 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  499 LPKIYDPFLHGPYRGRIKKWVSPLSINQTSKKKTTDPFWINKIHAILLTTDYHEIEQTLDTFNIKSLSKE---------- 568
Cdd:pfam05758  480 LPKIYDPFLNGPYRGRIKKVFSPSIINKTSRKNSLEGVWINKIHGILLSSNYPEFEQKINIFDRKSLSTEidyflnline 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  569 -----------KELSLltLTEDEQGNIDSKDRVKILKFLFDIVITNPNNQTIRKKSIGIKEISKKVPRWSYKLIDDLEQQ 637
Cdd:pfam05758  560 fskksvsslnfKGLSL--FPEQEQVKINSEEEKKILKFLFDAVRTDSNEKTIRKKSIGIKEINKKVPRWSYKLIDELEQL 637

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  638 EGENEENVTAEHEIRSRKSKRVVIFTNNQANADTYTNTKDANDPDQTNEVALIRYSQQSDFRRDIIKGSMRAQRRKTITL 717
Cdd:pfam05758  638 EGENEENVAEDYQIRSRKAKRVVIFTDNQKNYDTYNNTKDTDNSEQKNEVALIRYSQQSDFRRDIIKGSMRAQRRKTVIW 717

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  718 ELFQANVHSPLFLDRVDKPLFFSFDISGPLKLISRNWICKNvdKESKISDYIEKKIEKKDED---KREKYKREEKMRIEI 794
Cdd:pfam05758  718 ELFQANVHSPLFLDRIDKPLFFSFDIFGLIKIIFKNWMRKK--EEFKISSYTEEKTKESSKKeedKKEDNKREERARIEI 795

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834999320  795 AEAWDSILPAQVIRGSVLITQSILRKYIILPSLIIAKNIARMLLFQFPEWSEDLKDWNREMHVKCTYNGVQLSETEFPKN 874
Cdd:pfam05758  796 AEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFPKN 875

                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1834999320  875 WLTDGIQIKILFPFCLKPWHRFKQQPSHKDPMkmkKTKGQKNDFCFLTVWGMETELPFGSprnyPRKRRSFFEPI 949
Cdd:pfam05758  876 WLTDGIQIKILFPFRLKPWHKSKLRSSEKDLM---KKKVQKNDFCFLTVWGMETELPFGS----PRKRPSFFEPI 943
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH