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Conserved domains on  [gi|1852460421|gb|QKO28813|]
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NADH-plastoquinone oxidoreductase subunit 5, partial (chloroplast) [Anulocaulis leiosolenus var. leiosolenus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhF super family cl33324
NADH dehydrogenase subunit 5
 1-349 0e+00

NADH dehydrogenase subunit 5


The actual alignment was detected with superfamily member CHL00025:

Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 609.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:CHL00025  346 LITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSW 425

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421  81 LYSPVFAILAYFTAGLTAFYMFRIYLLTFEGHLNVYLKSYSGKKSNSLYSISLWGKEGLQTIDKNFGLLTllrMNNKKRT 160
Cdd:CHL00025  426 LYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSISLWGKEESKKINKLLLLLT---MNNNERV 502

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 161 SFFSnmKKPHQIDGNFKKKKQSFITITdlYNKNIYSYPHESQNTMLFPLIILILFTLFIGFTGIPFNQKGI--DILSKWL 238
Cdd:CHL00025  503 SFFS--KKTYKIDGNVRNMIRSFITIF--GNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIdlDILSKWL 578

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 239 TPSINLLHQNLHNFLDWYEFVINAIFSVSIAYLGIFVAFFLYKPVYSSLKNFDLINSFHKIGSKRIFWDKIINIIYNWSS 318
Cdd:CHL00025  579 TPSINLLHQNSNNSVDWYEFLTNAIFSVSIAFFGIFIASFLYGPVYSSLQNLDLINSFVKGGPKRIFLDKIINVIYNWSY 658

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1852460421 319 NRGYIDSFYATSLIRGVRGLSELVYFFDRRI 349
Cdd:CHL00025  659 NRGYIDAFYTISFIKGIRGLAELTHFFDRRV 689
 
Name Accession Description Interval E-value
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-349 0e+00

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 609.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:CHL00025  346 LITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSW 425

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421  81 LYSPVFAILAYFTAGLTAFYMFRIYLLTFEGHLNVYLKSYSGKKSNSLYSISLWGKEGLQTIDKNFGLLTllrMNNKKRT 160
Cdd:CHL00025  426 LYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSISLWGKEESKKINKLLLLLT---MNNNERV 502

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 161 SFFSnmKKPHQIDGNFKKKKQSFITITdlYNKNIYSYPHESQNTMLFPLIILILFTLFIGFTGIPFNQKGI--DILSKWL 238
Cdd:CHL00025  503 SFFS--KKTYKIDGNVRNMIRSFITIF--GNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIdlDILSKWL 578

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 239 TPSINLLHQNLHNFLDWYEFVINAIFSVSIAYLGIFVAFFLYKPVYSSLKNFDLINSFHKIGSKRIFWDKIINIIYNWSS 318
Cdd:CHL00025  579 TPSINLLHQNSNNSVDWYEFLTNAIFSVSIAFFGIFIASFLYGPVYSSLQNLDLINSFVKGGPKRIFLDKIINVIYNWSY 658

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1852460421 319 NRGYIDSFYATSLIRGVRGLSELVYFFDRRI 349
Cdd:CHL00025  659 NRGYIDAFYTISFIKGIRGLAELTHFFDRRV 689
Proton_antipo_C pfam01010
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ...
 103-346 6.35e-144

NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.


Pssm-ID: 366417 [Multi-domain]  Cd Length: 244  Bit Score: 406.61  E-value: 6.35e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 103 RIYLLTFEGHLNVYLKSYSGKKSNSLYSISLWGKEGLQTIDKNFGLLTLLRMNNKKRTSFFSnmKKPHQIDGNFKKKKQS 182
Cdd:pfam01010   1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLLLLTMNNNEKVSFFS--KKTYRIDGNVRNMTRP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 183 FITITDLYNKNIYSYPHESQNTMLFPLIILILFTLFIGFTGIPFNQKGI--DILSKWLTPSINLLHQNLHNFLDWYEFVI 260
Cdd:pfam01010  79 FITITHFDNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIdlDILSKWLTPSINLLHKNSNNSVDWYEFVT 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 261 NAIFSVSIAYLGIFVAFFLYKPVYSSLKNFDLINSFHKIGSKRIFWDKIINIIYNWSSNRGYIDSFYATSLIRGVRGLSE 340
Cdd:pfam01010 159 NAIFSVSIAYFGIFIASFLYKPVYSSFQNLDLINSFVKKGPKRIFLDKIINVIYNWSYNRGYIDVFYTTSFTRGIRGLAE 238


                  ....*.
gi 1852460421 341 LVYFFD 346
Cdd:pfam01010 239 LTHFFD 244
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-349 1.48e-40

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 150.30  E-value: 1.48e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEaivgyspdkSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:COG1009   330 LLTHAFFKALLFLGAGSVIHATG---------TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAAL 400

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421  81 ---LYSPVFAILAYFTAGLTAFYMFRIYLLTFeghlnvylksysgkksnslysislWGKEGLQTIDKnfglltllrmnnk 157
Cdd:COG1009   401 eagGLGPLLLAVALLGAFLTAFYSFRLFFLVF------------------------FGKPRPKTPKH------------- 443

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 158 krtsffsnmkkphqidgnfkkkkqsfititdlynkniysyPHESQNTMLFPLIILILFTLFIGFTGIPFnqkgidiLSKW 237
Cdd:COG1009   444 ----------------------------------------PHESPWLMTLPLVVLAVLSLVLGLLLPGL-------LEGL 476

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 238 LTPSiNLLHQNLHNFldwYEFVINAIfSVSIAYLGIFVAFFLYkpvysslknfdLINSFHKIGSKRifwdkiiNIIYNWS 317
Cdd:COG1009   477 LAPA-AVLGGELHLA---HGLLLNAL-PLLLSLLGIALGYLLY-----------LKRPLPALAERL-------KPLYRLL 533

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1852460421 318 SNRGYIDSFYATSLIRGVRGLSELVyFFDRRI 349
Cdd:COG1009   534 ANKWYFDELYDALFVKPVRALARFL-WFDRYV 564
 
Name Accession Description Interval E-value
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-349 0e+00

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 609.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:CHL00025  346 LITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSW 425

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421  81 LYSPVFAILAYFTAGLTAFYMFRIYLLTFEGHLNVYLKSYSGKKSNSLYSISLWGKEGLQTIDKNFGLLTllrMNNKKRT 160
Cdd:CHL00025  426 LYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSISLWGKEESKKINKLLLLLT---MNNNERV 502

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 161 SFFSnmKKPHQIDGNFKKKKQSFITITdlYNKNIYSYPHESQNTMLFPLIILILFTLFIGFTGIPFNQKGI--DILSKWL 238
Cdd:CHL00025  503 SFFS--KKTYKIDGNVRNMIRSFITIF--GNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIdlDILSKWL 578

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 239 TPSINLLHQNLHNFLDWYEFVINAIFSVSIAYLGIFVAFFLYKPVYSSLKNFDLINSFHKIGSKRIFWDKIINIIYNWSS 318
Cdd:CHL00025  579 TPSINLLHQNSNNSVDWYEFLTNAIFSVSIAFFGIFIASFLYGPVYSSLQNLDLINSFVKGGPKRIFLDKIINVIYNWSY 658

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1852460421 319 NRGYIDSFYATSLIRGVRGLSELVYFFDRRI 349
Cdd:CHL00025  659 NRGYIDAFYTISFIKGIRGLAELTHFFDRRV 689
Proton_antipo_C pfam01010
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ...
 103-346 6.35e-144

NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.


Pssm-ID: 366417 [Multi-domain]  Cd Length: 244  Bit Score: 406.61  E-value: 6.35e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 103 RIYLLTFEGHLNVYLKSYSGKKSNSLYSISLWGKEGLQTIDKNFGLLTLLRMNNKKRTSFFSnmKKPHQIDGNFKKKKQS 182
Cdd:pfam01010   1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLLLLTMNNNEKVSFFS--KKTYRIDGNVRNMTRP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 183 FITITDLYNKNIYSYPHESQNTMLFPLIILILFTLFIGFTGIPFNQKGI--DILSKWLTPSINLLHQNLHNFLDWYEFVI 260
Cdd:pfam01010  79 FITITHFDNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIdlDILSKWLTPSINLLHKNSNNSVDWYEFVT 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 261 NAIFSVSIAYLGIFVAFFLYKPVYSSLKNFDLINSFHKIGSKRIFWDKIINIIYNWSSNRGYIDSFYATSLIRGVRGLSE 340
Cdd:pfam01010 159 NAIFSVSIAYFGIFIASFLYKPVYSSFQNLDLINSFVKKGPKRIFLDKIINVIYNWSYNRGYIDVFYTTSFTRGIRGLAE 238


                  ....*.
gi 1852460421 341 LVYFFD 346
Cdd:pfam01010 239 LTHFFD 244
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-349 5.42e-63

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 212.19  E-value: 5.42e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:PRK07376  346 LMTHAYFKAMLFLGSGSVIHGMEEVVGHDPVLAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAF 425

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421  81 LYSPVFAILAYFTAGLTAFYMFRIYLLTFEGHlnvylksysgkksnslysislwgkeglqtidknfglltlLRMNNKK-R 159
Cdd:PRK07376  426 EANPALWFVGFLTAGMTAFYMFRMYFLTFEGE---------------------------------------FRGNDKElQ 466

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 160 TSFFSNMKKPHQIDGNFKKKKQsfititdlyNKNIYSYPHESQNTMLFPLIILILFTLFIGFTGIPFNQKGIDILSkwlt 239
Cdd:PRK07376  467 KELLAAADAPGHHEGHHEEHGE---------HHHHSGSPHESPWTMTLPLVVLAVPSVLIGLLGTPWNNRFEAFLH---- 533

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 240 pSINLLHQNLHNFlDWYEFVINAIFSVSIAYLGIFVAFFLYkpvysslknfdlinSFHKIGSKRIfwDKIINIIYNWSSN 319
Cdd:PRK07376  534 -APGEALEAAAHF-EWGEFLILAGASVGIALIGITLASLMY--------------LLKKIDPAAI--AERFPPLYQFSLN 595

                         330       340       350
                  ....*....|....*....|....*....|
gi 1852460421 320 RGYIDSFYATSLIRGVRGLSELVYFFDRRI 349
Cdd:PRK07376  596 KWYLDDIYEKLFVKGSRRLARQVLEVDYKV 625
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-349 1.48e-40

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 150.30  E-value: 1.48e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEaivgyspdkSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:COG1009   330 LLTHAFFKALLFLGAGSVIHATG---------TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAAL 400

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421  81 ---LYSPVFAILAYFTAGLTAFYMFRIYLLTFeghlnvylksysgkksnslysislWGKEGLQTIDKnfglltllrmnnk 157
Cdd:COG1009   401 eagGLGPLLLAVALLGAFLTAFYSFRLFFLVF------------------------FGKPRPKTPKH------------- 443

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 158 krtsffsnmkkphqidgnfkkkkqsfititdlynkniysyPHESQNTMLFPLIILILFTLFIGFTGIPFnqkgidiLSKW 237
Cdd:COG1009   444 ----------------------------------------PHESPWLMTLPLVVLAVLSLVLGLLLPGL-------LEGL 476

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 238 LTPSiNLLHQNLHNFldwYEFVINAIfSVSIAYLGIFVAFFLYkpvysslknfdLINSFHKIGSKRifwdkiiNIIYNWS 317
Cdd:COG1009   477 LAPA-AVLGGELHLA---HGLLLNAL-PLLLSLLGIALGYLLY-----------LKRPLPALAERL-------KPLYRLL 533

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1852460421 318 SNRGYIDSFYATSLIRGVRGLSELVyFFDRRI 349
Cdd:COG1009   534 ANKWYFDELYDALFVKPVRALARFL-WFDRYV 564
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-349 2.04e-38

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 144.53  E-value: 2.04e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:PRK06590  336 LMTHAFFKALLFLGAGSVIHAM--------HHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAAF 407

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421  81 LYSPVFA-ILAYFTAGLTAFYMFRIYLLTFEGhlnvylksysgkksnslysislwgkeglqtidknfglltllrmnnkkr 159
Cdd:PRK06590  408 ANGHINLfVAGLVGAFLTAFYSFRLIFLVFHG------------------------------------------------ 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 160 tsffsnmKKPHQIDgnfkkkkqsfititdlynkniysYPHESQNTMLFPLIILILFTLFIGFTGIPfnqkgidilskWLT 239
Cdd:PRK06590  440 -------KEKEKIH-----------------------HPHESPAVMTLPLIVLAVLSVFAGALIVP-----------PFL 478

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421 240 PSINLLHQNLHNFLDWYEFVINAIFSVSIAYLGIFVAFFLYkpvyssLKNFDLINSFHKIGSkrifwdkiinIIYNWSSN 319
Cdd:PRK06590  479 GVLPLTTELAHGEAEHHLPVWVALLPLVVALAGIALAWLLY------LKKPTLPTSIAAPGR----------FLYTLLRN 542

                         330       340       350
                  ....*....|....*....|....*....|
gi 1852460421 320 RGYIDSFYATSLIRGVRGLSelvYFFDRRI 349
Cdd:PRK06590  543 KYYFDELYEKVFVKPGLALA---RLLWKDG 569
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-111 9.84e-20

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 90.35  E-value: 9.84e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSmeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:PRK07390  339 LLTHAIAKALLFMSVGSIILT---------TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWALLRLADGLW 409

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1852460421  81 LYSPVFAILAYFTAGLTAFYMFRIYLLTFEG 111
Cdd:PRK07390  410 AVSPWLVGVLLLVNALTAFNLTRVFRLVFLG 440
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-95 9.89e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.06  E-value: 9.89e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:pfam00361 205 LLTHGLFSAGLFLCAGSVIYRRV--------HTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAV 276

                          90
                  ....*....|....*
gi 1852460421  81 LYSPVFAILAYFTAG 95
Cdd:pfam00361 277 AASWIFLVLAGVVGS 291
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-152 7.48e-18

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 84.51  E-value: 7.48e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILnDSW 80
Cdd:MTH00151  295 LYTHALFKALLFLCAGSIIHSS--------SGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLIL-ESS 365

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421  81 LYSPV---FAILAYFTAGLTAFYMFRIYLLTFEGHLNVylKSYSGKKSNSLYSI---------SLWGKEGLQTIDKNFGL 148
Cdd:MTH00151  366 LMSPTsllMVLLMFVGVGLTALYSARLSFCLVWGSMKS--SSLSSKSDEDFYVSlpmlllslgALIGGKLLQSLFEGFSE 443


                  ....
gi 1852460421 149 LTLL 152
Cdd:MTH00151  444 EFFL 447
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-129 2.05e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 83.13  E-value: 2.05e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILndSW 80
Cdd:MTH00210  330 LMNHAFFKALLFLSAGSVIHAV--------SDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLIL--EL 399

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1852460421  81 LYSPVFAILAY----FTAGLTAFYMFRIYLLTFEGHLNVYLKSYSGKKSNSLY 129
Cdd:MTH00210  400 TYDKYYIAFAYwlgsFSALLTAFYSIRLIYLTFITNTNSKKEVFIGVHESSWN 452
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-109 2.68e-17

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 82.82  E-value: 2.68e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILndSW 80
Cdd:MTH00020  329 LMNHAFFKALLFLSAGSVIHAL--------SDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLIL--EL 398

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1852460421  81 LYSPVFAILAY----FTAGLTAFYMFRIYLLTF 109
Cdd:MTH00020  399 AFGQYYLIFAYwlgcFSALLTAFYSIRLIYLTF 431
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-105 1.43e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 80.19  E-value: 1.43e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILN--- 77
Cdd:COG0651   330 LLNHALAKALLFLAAGAIERAT---------GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQaal 400

                          90       100
                  ....*....|....*....|....*...
gi 1852460421  78 DSWLYspVFAILAYFTAGLTAFYMFRIY 105
Cdd:COG0651   401 EAGAW--LLAAVLLLSSLLTLAYFVRIF 426
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 2-112 1.91e-16

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 80.21  E-value: 1.91e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   2 ITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKD---EILND 78
Cdd:MTH00004  329 STHAFFKAMLFLCSGSIIHNL--------NNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDtiiETLNT 400

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1852460421  79 SWLYSpvFAILAYFTA-GLTAFYMFRIYLLTFEGH 112
Cdd:MTH00004  401 SYLNA--WALLLTLLAtSFTAAYSLRMILLVQTGF 433
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-111 1.32e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 77.70  E-value: 1.32e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKdEILNDSW 80
Cdd:PRK12667  353 IINHAIAKSLLFLASGVFIHAA---------GTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSK-LLLFNAL 422

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1852460421  81 LYS--PVFAILAYFTAGLTAFYMFRIYLLTFEG 111
Cdd:PRK12667  423 LESgfYLPALVLLIASAISLVGYFRAWYSLFFG 455
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-133 1.53e-15

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 77.49  E-value: 1.53e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:MTH00165  298 LLTHALFKALLFLCAGSIIHNM--------SNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVS 369

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1852460421  81 L--YSPVFAILAYFTAGLTAFYMFRIYLLTFEGHLNVY-LKSYSGKKSNSLYSISL 133
Cdd:MTH00165  370 MsnLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKsLNNLSDESKFMLKSMIL 425
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-106 3.17e-15

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 76.73  E-value: 3.17e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILnDSW 80
Cdd:MTH00207  298 LITHALFKALLFVCAGSLIHSHH--------HSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLIL-ESS 368

                          90       100
                  ....*....|....*....|....*....
gi 1852460421  81 LYSP---VFAILAYFTAGLTAFYMFRIYL 106
Cdd:MTH00207  369 LFYPhnsLMILMIFLATALTAAYSTRFTL 397
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-115 4.66e-15

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 76.14  E-value: 4.66e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEIL---N 77
Cdd:MTH00211  323 ICTHAFFKAMLFMCSGSIIHGL--------NNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILesmN 394

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1852460421  78 DSWLYSPVFaILAYFTAGLTAFYMFRIYLLTFEGHLNV 115
Cdd:MTH00211  395 GSYLNAWAL-LLTLLATSLTAAYSFRLIFLSLGGYPRF 431
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 3-109 9.06e-15

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 75.39  E-value: 9.06e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   3 THAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEIL-----N 77
Cdd:MTH00208  357 THAFFKAMLFLCSGSIIHSL--------NNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILeaglaS 428

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1852460421  78 DSWLYSPVFAILAYFtagLTAFYMFRIYLLTF 109
Cdd:MTH00208  429 ISNLLSIILALIATL---LTAVYSFRIIFFCF 457
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 3-112 1.07e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 74.89  E-value: 1.07e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   3 THAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKD---EILNDS 79
Cdd:MTH00108  331 THAFFKAMLFMCSGSIIHNL--------NDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDliiEAANTS 402

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1852460421  80 wlYSPVFAILAYFTA-GLTAFYMFRIYLLTFEGH 112
Cdd:MTH00108  403 --YTNAWALLITLIAtSLTAAYSTRIIFFALLGQ 434
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-111 4.41e-14

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 73.38  E-value: 4.41e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEaivgyspdkSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEIL---- 76
Cdd:PRK06521  345 LLNHALFKSLLFLGAGAVLHATG---------TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLqsll 415

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1852460421  77 ----NDSWLYS---PVFAILAYFTAGLTAFYMFRIYLLTFEG 111
Cdd:PRK06521  416 sspgLPQWGLKlavPIAAAMLALTAALAAMCFVKFYGITFLG 457
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 3-104 1.29e-13

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 71.79  E-value: 1.29e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   3 THAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEI---LNDS 79
Cdd:MTH00137  336 THAFFKAMLFLCSGSIIHSL--------NDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIieaLNTS 407

                          90       100
                  ....*....|....*....|....*..
gi 1852460421  80 WL--YSPVFAILAyftAGLTAFYMFRI 104
Cdd:MTH00137  408 HLnaWALTLTLIA---TSFTAVYSLRV 431
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 3-104 3.48e-13

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 70.32  E-value: 3.48e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   3 THAYSKALLFLGSGSIIHSMeaivgyspDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEI---LNDS 79
Cdd:MTH00066  328 THAFFKAMLFLCSGSIIHSL--------NDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIieaMNTS 399

                          90       100
                  ....*....|....*....|....*.
gi 1852460421  80 WLYSpvFAILAYFTA-GLTAFYMFRI 104
Cdd:MTH00066  400 NLNS--WALILTLIAtSFTAVYSFRI 423
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-114 6.41e-13

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 69.67  E-value: 6.41e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILnDSW 80
Cdd:MTH00209  294 LITHALFKALLFICAGNIIHSHG--------HSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLIL-ESM 364

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1852460421  81 LYSPV---FAILAYFTAGLTAFYMFRIYLLTFEGHLN 114
Cdd:MTH00209  365 LESNMpimTLILMFLSTSLTAAYSMRLSYFSLWGPNS 401
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-111 3.15e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 67.43  E-value: 3.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   2 ITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSWL 81
Cdd:PRK08376  358 VNHALYKALLFLTAGAVIYET---------GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL 428

                          90       100       110
                  ....*....|....*....|....*....|
gi 1852460421  82 YSPVFAILAYFTAGLTAFYMFRIYLLTFEG 111
Cdd:PRK08376  429 FNPILGVIAMIGSVLTLASFVKVFHTAFFG 458
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-76 2.91e-11

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 64.59  E-value: 2.91e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMEAivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEIL 76
Cdd:MTH00032  345 LVNHAFFKALLFLSAGSVIHSTTV-------DEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL 413
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-104 1.05e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 62.59  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIihsmEAIVGyspdkSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEIL---N 77
Cdd:PRK08375  329 LLHHALMKGALFLAAGAI----EVTYG-----TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVvgaV 399

                          90       100
                  ....*....|....*....|....*..
gi 1852460421  78 DSWLYSPVFAILAyfTAGLTAFYMFRI 104
Cdd:PRK08375  400 EAGQWLVLAVLLA--SSLLALLYFLRI 424
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 1-76 3.05e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 51.69  E-value: 3.05e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEIL 76
Cdd:PRK08377  331 MINHAIVKALLFLAVGYVGITL---------GGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRII 397
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-113 1.02e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.38  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   2 ITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDswL 81
Cdd:PRK08668  331 FNHALFKGLFFLIFAAVIYRT---------GTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEA--L 399

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1852460421  82 YS---PVFAILAYFTAGLTAFYMFRIYLLTFEGHL 113
Cdd:PRK08668  400 ISkgmPITAFMAFFGSIGSFLYVFRPLAGVFLGQL 434
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 2-114 1.07e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 50.20  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   2 ITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSWL 81
Cdd:PRK05846  336 ISHGLSSAALFLLVGVLYDRL---------HTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQ 406

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1852460421  82 YSPVFAILAYFTAGLTAFYMFRIYLLTFEGHLN 114
Cdd:PRK05846  407 VNPVIAFIATTGLILAAVYSLWLYQRVMFGPVK 439
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-96 1.50e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 49.92  E-value: 1.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSmeaiVGyspdkSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILN--- 77
Cdd:PRK12647  317 LVAHSLYKGALFMVAGIIDHE----TG-----TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEall 387

                          90       100
                  ....*....|....*....|.
gi 1852460421  78 --DSWlySPVFAILAYFTAGL 96
Cdd:PRK12647  388 eaPLW--SLILTVAAVLGNAL 406
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
8-109 2.98e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 48.79  E-value: 2.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   8 KALLFLGSGSIIhsmeAIVGYSPDKSqnmvlMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDS------WL 81
Cdd:PRK12663  337 KTALFLIAGSLV----RLTGYRSLQY-----LGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGAldngayIL 407

                          90       100
                  ....*....|....*....|....*...
gi 1852460421  82 yspvfAILAYFTAGLTAFYMFRIYLLTF 109
Cdd:PRK12663  408 -----LALMLITSLITMYSLFRIFFLAY 430
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-111 1.07e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 46.87  E-value: 1.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLgsgsIIHSMEAIVGYSPDKSqnmvlMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:PRK07691  333 LIHDMIVKAALFL----LIGIMIKITGTTDLKK-----MGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTF 403

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1852460421  81 LY-SPVFAILAYFTAGLTAFYMFRIYLLTFEG 111
Cdd:PRK07691  404 EAgFYVSGIIVLLSSLLVLYSVIKIFLKGFWG 435
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-104 1.62e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 46.35  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIihsmeaivgYSPDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEIL---- 76
Cdd:PRK06589  338 LVSHSFAKICLFYSMGSI---------YSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILlaas 408

                          90       100
                  ....*....|....*....|....*....
gi 1852460421  77 -NDSWLYSPVFAILAYFTAGLTAFYMFRI 104
Cdd:PRK06589  409 eQNQPWLSIIVMLVVIASSILSALYLLKI 437
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 2-72 1.67e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 46.65  E-value: 1.67e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1852460421   2 ITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSK 72
Cdd:PRK08667  340 LNHALFKSLLFLTAGSVVHAT---------GTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASE 401
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 1-89 3.02e-05

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 45.74  E-value: 3.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW 80
Cdd:PRK06525  333 IFNHAFAKSLFFLVAGALSYSC---------GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGF 403


                  ....*....
gi 1852460421  81 LYSPVFAIL 89
Cdd:PRK06525  404 ELSVEYWIL 412
PRK12650 PRK12650
DUF4040 family protein;
2-102 3.44e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.80  E-value: 3.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   2 ITHAYSKALLFLGSGSIIHsmEAivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILnDSWL 81
Cdd:PRK12650  331 LAHALFKSSLFMLIGVVDH--QA-------GTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGML-TAFL 400

                          90       100
                  ....*....|....*....|....
gi 1852460421  82 YSPVFA---ILAYFTAGLTAFYMF 102
Cdd:PRK12650  401 EAPGGNagvVLLLVGAALGAVFTF 424
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 1-111 6.24e-05

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 44.82  E-value: 6.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSmeaiVGYspdksQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEI----- 75
Cdd:PRK08042  314 LLNHSLFKSVLFLGAGSVWFR----TGH-----RDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIyqsff 384

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1852460421  76 -LNDSWLY-----SPVFAILAYFTAGLTAFYMFRIYLLTFEG 111
Cdd:PRK08042  385 kLSNSGAFvarllGPLLAVGLAITGALAVMCMAKVYGVTFLG 426
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
4-72 2.38e-04

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 42.96  E-value: 2.38e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1852460421   4 HAYS----KALLFLGSGSIIHSmeaiVGYSpdksqNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSK 72
Cdd:PRK12668  297 HAFNhilyKGLLFMSAGAVLYR----TGTE-----KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSK 360
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-90 8.67e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 41.33  E-value: 8.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421   1 LITHAYSKALLFLGSGSIIHsmEAivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSK----DEIL 76
Cdd:PRK12648  329 IINHATFKASLFMAAGIIDH--ET-------GTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKemffAETL 399

                          90
                  ....*....|....*....
gi 1852460421  77 NDSWLYS-----PVFAILA 90
Cdd:PRK12648  400 DTHLLGSldwllPVAATLA 418
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
41-104 1.19e-03

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 40.57  E-value: 1.19e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852460421  41 GLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEIL------NDSWLyspvfAILAYFTAGLTAFYMFRI 104
Cdd:PRK05777  360 GLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFeaaveaGLWWL-----AVIGVLNSAIGAFYYLRV 424
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 41-104 1.26e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 40.48  E-value: 1.26e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1852460421  41 GLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSW---LYspVFAILAYFTAGLTAFYMFRI 104
Cdd:COG1007   359 GLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVeagLY--WLAVIAVLNSVISAYYYLRV 423
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-73 1.69e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.20  E-value: 1.69e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1852460421   1 LITHAYSKALLFLGSGSIIHsmEAivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKD 73
Cdd:PRK12649  340 LLNHATFKACLFLVAGIVAH--EA-------ATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKE 403
PRK12646 PRK12646
DUF4040 family protein;
1-73 2.80e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 39.74  E-value: 2.80e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSMeaivgyspdKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKD 73
Cdd:PRK12646  346 LMNHAIFKCALFMGVGIIDHEA---------GTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKE 409
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 1-72 3.11e-03

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 39.52  E-value: 3.11e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1852460421   1 LITHAYSKALLFLGSGSIIHSmeaiVGyspdkSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSK 72
Cdd:PRK12645  345 LINHATFKGSLFMIVGIVDHE----TG-----TRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSK 407
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 39-109 7.58e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 38.03  E-value: 7.58e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1852460421  39 MGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEIL-----NDSWLyspVFAILA--YFTAGLTAFYMFRIYLLTF 109
Cdd:PRK12665  360 LGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLeagaeDGTWL---AWALVAggVVTSLLTLYAVARVWTKAF 434
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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